Wall clock time and date at job start Tue Mar 31 2020 21:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35954 * 117.00347 * 2 1 4 4 C 1.38666 * 120.05979 * 359.72323 * 3 2 1 5 5 C 1.38178 * 119.96558 * 180.27754 * 4 3 2 6 6 C 1.38257 * 120.10024 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94121 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47256 * 270.02409 * 7 6 5 9 9 C 1.50702 * 109.46827 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00319 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99607 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00154 * 0.02562 * 11 9 8 13 13 C 1.46500 * 120.00015 * 180.02562 * 11 9 8 14 14 C 1.53002 * 109.47369 * 89.99692 * 13 11 9 15 15 N 1.46500 * 109.47369 * 179.97438 * 14 13 11 16 16 C 1.46494 * 120.00237 * 270.00302 * 15 14 13 17 17 C 1.36938 * 119.99532 * 90.00108 * 15 14 13 18 18 H 1.07997 * 119.99999 * 22.34804 * 17 15 14 19 19 C 1.38814 * 119.99533 * 202.34467 * 17 15 14 20 20 N 1.31614 * 120.00645 * 11.34638 * 19 17 15 21 21 Si 1.86805 * 119.99612 * 191.34943 * 19 17 15 22 22 H 1.48496 * 109.47189 * 60.00117 * 21 19 17 23 23 H 1.48508 * 109.46807 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47144 * 299.99921 * 21 19 17 25 25 C 1.38256 * 120.12321 * 0.04576 * 6 5 4 26 26 C 1.38331 * 120.03400 * 359.95388 * 25 6 5 27 27 F 1.35098 * 120.05059 * 180.02562 * 26 25 6 28 28 H 1.08996 * 109.47141 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46943 * 300.00432 * 1 2 3 30 30 H 1.09006 * 109.46625 * 60.00273 * 1 2 3 31 31 H 1.07997 * 120.01603 * 0.24678 * 4 3 2 32 32 H 1.07999 * 119.94870 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46835 * 30.02149 * 7 6 5 34 34 H 1.08999 * 109.47466 * 150.01824 * 7 6 5 35 35 H 1.08989 * 109.47230 * 299.99825 * 8 7 6 36 36 H 1.09004 * 109.46749 * 60.00029 * 8 7 6 37 37 H 1.08996 * 109.46844 * 90.00283 * 12 11 9 38 38 H 1.09001 * 109.46842 * 210.00120 * 12 11 9 39 39 H 1.09001 * 109.46909 * 329.99950 * 12 11 9 40 40 H 1.09000 * 109.47285 * 210.00029 * 13 11 9 41 41 H 1.09006 * 109.47220 * 329.99790 * 13 11 9 42 42 H 1.09000 * 109.47193 * 300.00393 * 14 13 11 43 43 H 1.09000 * 109.46893 * 60.00328 * 14 13 11 44 44 H 1.09004 * 109.47396 * 94.20691 * 16 15 14 45 45 H 1.08996 * 109.47565 * 214.21215 * 16 15 14 46 46 H 1.08998 * 109.47273 * 334.21313 * 16 15 14 47 47 H 0.96993 * 120.00643 * 179.97438 * 20 19 17 48 48 H 1.08004 * 119.98373 * 179.97438 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2923 2.3751 -0.0058 5 6 1.9218 3.6052 -0.0116 6 6 3.3024 3.6776 -0.0111 7 6 3.9852 5.0210 -0.0168 8 6 4.2166 5.4694 -1.4613 9 6 4.8988 6.8132 -1.4669 10 8 5.1733 7.3583 -0.4189 11 7 5.2047 7.4086 -2.6366 12 6 4.8736 6.7498 -3.9026 13 6 5.8684 8.7146 -2.6422 14 6 7.3854 8.5159 -2.6403 15 7 8.0491 9.8219 -2.6465 16 6 8.3816 10.4686 -3.9183 17 6 8.3586 10.4382 -1.4635 18 1 8.4580 9.8544 -0.5604 19 6 8.5445 11.8133 -1.4251 20 7 8.2091 12.5520 -2.4615 21 14 9.2709 12.6154 0.0975 22 1 10.6261 12.0629 0.3493 23 1 9.3662 14.0823 -0.1134 24 1 8.3985 12.3386 1.2669 25 6 4.0580 2.5197 -0.0057 26 6 3.4334 1.2855 0.0001 27 9 4.1713 0.1539 0.0059 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2138 2.3201 -0.0063 32 1 1.3343 4.5114 -0.0165 33 1 3.3562 5.7504 0.4936 34 1 4.9430 4.9441 0.4977 35 1 4.8455 4.7401 -1.9717 36 1 3.2586 5.5464 -1.9756 37 1 3.8754 7.0520 -4.2191 38 1 5.5991 7.0388 -4.6631 39 1 4.9002 5.6686 -3.7673 40 1 5.5754 9.2673 -3.5349 41 1 5.5743 9.2754 -1.7549 42 1 7.6784 7.9632 -1.7477 43 1 7.6795 7.9552 -3.5276 44 1 7.5799 11.1517 -4.1991 45 1 9.3123 11.0255 -3.8104 46 1 8.4998 9.7098 -4.6918 47 1 8.3387 13.5128 -2.4346 48 1 5.1364 2.5789 -0.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268242163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:32 Heat of formation + Delta-G solvation = -68.675343 kcal Electronic energy + Delta-G solvation = -28551.069776 eV Core-core repulsion = 24328.980704 eV Total energy + Delta-G solvation = -4222.089072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.03526 -40.47275 -39.64577 -38.15426 -36.07531 -34.82556 -33.69631 -31.45597 -31.09697 -29.92131 -28.54497 -27.65787 -26.36380 -25.82608 -24.77122 -23.14181 -22.97166 -21.37916 -20.42949 -18.76366 -18.69388 -17.34138 -17.25628 -16.74297 -16.53274 -16.49458 -15.79980 -15.60521 -15.37189 -15.18356 -14.75543 -14.61134 -14.44416 -13.93753 -13.59907 -13.48722 -13.24104 -12.98581 -12.86426 -12.58549 -12.54710 -12.45668 -12.30116 -12.24144 -11.81616 -11.74816 -11.49332 -11.27932 -11.25800 -11.08416 -10.82884 -10.77831 -10.48327 -10.12054 -9.90518 -9.74241 -9.48502 -9.28277 -8.57733 -8.45123 -8.32403 -6.71073 -5.67895 -3.13022 0.76772 0.85462 2.71937 2.91445 3.12387 3.34824 3.46015 3.48876 3.51988 3.87205 4.28650 4.34323 4.53530 4.57601 4.67386 4.74249 4.84038 4.87112 4.96924 4.99782 5.04824 5.15414 5.17314 5.41530 5.46180 5.50102 5.54376 5.61229 5.69554 5.71471 5.73164 5.82093 5.87254 6.01635 6.23925 6.27865 6.28695 6.31775 6.64609 6.74868 6.80969 6.86483 7.08332 7.40402 7.71701 7.74215 7.88686 8.44358 8.50563 9.29570 9.91441 10.39274 11.37675 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021981 B = 0.001890 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.501367 B =14811.455385 C =15165.753233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.087 3.913 4 C -0.179 4.179 5 C -0.085 4.085 6 C -0.084 4.084 7 C -0.064 4.064 8 C -0.133 4.133 9 C 0.504 3.496 10 O -0.533 6.533 11 N -0.614 5.614 12 C 0.079 3.921 13 C 0.092 3.908 14 C 0.145 3.855 15 N -0.599 5.599 16 C 0.164 3.836 17 C -0.250 4.250 18 H 0.069 0.931 19 C 0.000 4.000 20 N -0.912 5.912 21 Si 0.906 3.094 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.112 4.112 26 C 0.071 3.929 27 F -0.133 7.133 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.046 0.954 43 H 0.034 0.966 44 H 0.028 0.972 45 H 0.046 0.954 46 H -0.005 1.005 47 H 0.252 0.748 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.299 -23.687 -0.598 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.041 3.959 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.085 4.085 7 C -0.102 4.102 8 C -0.173 4.173 9 C 0.292 3.708 10 O -0.410 6.410 11 N -0.349 5.349 12 C -0.065 4.065 13 C -0.032 4.032 14 C 0.016 3.984 15 N -0.322 5.322 16 C 0.020 3.980 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.197 4.197 20 N -0.558 5.558 21 Si 0.736 3.264 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.131 4.131 26 C 0.051 3.949 27 F -0.112 7.112 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.014 0.986 47 H 0.062 0.938 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.992 -23.416 -0.087 28.932 hybrid contribution 0.059 0.457 0.564 0.728 sum -16.933 -22.959 0.477 28.532 Atomic orbital electron populations 1.23115 0.77920 1.04271 1.01535 1.86133 1.21721 1.25882 1.88821 1.19013 0.90834 0.85646 1.00391 1.21133 1.00258 0.91427 1.06980 1.20973 0.93993 0.97356 0.98007 1.19731 0.93313 0.94920 1.00499 1.20335 1.01848 0.91984 0.96010 1.21688 1.01874 0.95281 0.98469 1.20571 0.79365 0.87155 0.83754 1.90746 1.53639 1.65564 1.31052 1.48113 1.59523 1.21665 1.05562 1.21760 1.00766 0.97495 0.86497 1.22608 0.95588 0.81977 1.03016 1.21099 0.89722 0.88801 0.98770 1.43960 1.66209 1.18557 1.03508 1.20814 1.00113 0.93048 0.84069 1.19222 1.41182 0.89747 0.87821 0.91280 1.25023 1.00956 0.96223 0.97543 1.70045 1.51053 1.04730 1.29928 0.86304 0.79261 0.78080 0.82761 1.21088 1.21675 1.20828 1.20990 1.01284 0.89642 1.01154 1.16963 0.85913 0.83005 1.08995 1.91503 1.76406 1.49016 1.94267 0.87974 0.92409 0.92398 0.84499 0.84814 0.89686 0.89678 0.88966 0.89113 0.92987 0.90922 0.91468 0.91567 0.89701 0.93573 0.94765 0.95397 0.93556 0.98638 0.93767 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.91 10.36 -19.59 -0.20 -3.12 16 3 C 0.09 0.83 6.69 -39.18 -0.26 0.57 16 4 C -0.18 -1.35 9.04 -39.45 -0.36 -1.70 16 5 C -0.09 -0.66 9.69 -39.60 -0.38 -1.04 16 6 C -0.08 -0.75 5.13 -104.61 -0.54 -1.28 16 7 C -0.06 -0.64 4.63 -27.88 -0.13 -0.77 16 8 C -0.13 -1.33 4.23 -27.88 -0.12 -1.45 16 9 C 0.50 7.70 7.67 -10.99 -0.08 7.61 16 10 O -0.53 -10.67 15.56 5.56 0.09 -10.58 16 11 N -0.61 -9.23 2.87 -181.57 -0.52 -9.75 16 12 C 0.08 0.80 10.24 59.85 0.61 1.41 16 13 C 0.09 1.79 5.73 -4.04 -0.02 1.77 16 14 C 0.14 3.09 6.03 -4.04 -0.02 3.07 16 15 N -0.60 -15.50 2.93 -181.12 -0.53 -16.03 16 16 C 0.16 4.07 9.01 59.84 0.54 4.61 16 17 C -0.25 -7.15 9.67 -15.06 -0.15 -7.30 16 18 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 19 C 0.00 0.01 5.13 -17.43 -0.09 -0.08 16 20 N -0.91 -26.96 10.58 55.49 0.59 -26.37 16 21 Si 0.91 22.66 29.57 -169.99 -5.03 17.63 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 C -0.11 -1.05 9.67 -39.54 -0.38 -1.43 16 26 C 0.07 0.75 7.31 -39.30 -0.29 0.46 16 27 F -0.13 -1.60 17.11 2.25 0.04 -1.56 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.21 7.67 -51.93 -0.40 -0.19 16 30 H 0.06 0.21 7.65 -51.93 -0.40 -0.19 16 31 H 0.14 0.68 6.30 -52.49 -0.33 0.35 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 35 H 0.09 0.78 7.40 -51.94 -0.38 0.40 16 36 H 0.09 0.74 8.11 -51.93 -0.42 0.31 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 40 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 41 H 0.08 1.97 7.42 -51.93 -0.39 1.59 16 42 H 0.05 1.05 8.03 -51.93 -0.42 0.63 16 43 H 0.03 0.65 7.86 -51.93 -0.41 0.25 16 44 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16 45 H 0.05 1.24 7.19 -51.93 -0.37 0.86 16 46 H 0.00 -0.11 7.84 -51.93 -0.41 -0.51 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -34.77 400.14 -7.77 -42.54 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -7.55 Total: -4.36 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.68 Total: 5.57 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.46 Total: -52.15 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.12 Total: -13.70 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.77 -7.77 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268242163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.135 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds