Wall clock time and date at job start Tue Mar 31 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46869 * 239.99817 * 3 2 1 5 5 H 1.48505 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48486 * 109.47406 * 119.99618 * 3 2 1 7 7 C 1.38817 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99812 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00086 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47273 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47035 * 180.02562 * 11 10 9 13 13 H 1.08991 * 109.49661 * 54.93954 * 12 11 10 14 14 C 1.53042 * 109.49524 * 175.00456 * 12 11 10 15 15 C 1.53043 * 109.53488 * 181.35018 * 14 12 11 16 16 C 1.53195 * 109.31046 * 298.62896 * 15 14 12 17 17 N 1.46926 * 108.77270 * 54.63977 * 16 15 14 18 18 C 1.34779 * 120.63089 * 126.36601 * 17 16 15 19 19 O 1.21597 * 119.99907 * 186.38108 * 18 17 16 20 20 C 1.47432 * 119.99949 * 6.38521 * 18 17 16 21 21 C 1.41285 * 126.41477 * 208.93388 * 20 18 17 22 22 N 1.30446 * 108.02166 * 180.02562 * 21 20 18 23 23 N 1.39930 * 108.89775 * 0.02562 * 22 21 20 24 24 C 1.46506 * 125.75188 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.46993 * 305.02255 * 24 23 22 26 26 F 1.39901 * 109.46924 * 180.02562 * 25 24 23 27 27 C 1.34260 * 108.49312 * 0.22890 * 23 22 21 28 28 C 1.46925 * 118.73828 * 306.63939 * 17 16 15 29 29 H 0.96995 * 120.00378 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00168 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46693 * 60.00310 * 10 9 7 32 32 H 1.08993 * 109.47342 * 300.00092 * 10 9 7 33 33 H 1.09007 * 109.47026 * 60.00215 * 11 10 9 34 34 H 1.08998 * 109.47745 * 300.00516 * 11 10 9 35 35 H 1.09003 * 109.46205 * 61.32840 * 14 12 11 36 36 H 1.09003 * 109.44955 * 301.36076 * 14 12 11 37 37 H 1.09008 * 109.49386 * 178.68239 * 15 14 12 38 38 H 1.08992 * 109.50183 * 58.58215 * 15 14 12 39 39 H 1.08997 * 109.59046 * 294.85260 * 16 15 14 40 40 H 1.09000 * 109.69970 * 174.49625 * 16 15 14 41 41 H 1.08003 * 125.98891 * 0.02562 * 21 20 18 42 42 H 1.08999 * 109.46945 * 185.02723 * 24 23 22 43 43 H 1.09000 * 109.47300 * 65.02748 * 24 23 22 44 44 H 1.08999 * 109.46893 * 60.00437 * 25 24 23 45 45 H 1.08996 * 109.47349 * 299.99893 * 25 24 23 46 46 H 1.08006 * 126.28826 * 179.74822 * 27 23 22 47 47 H 1.09002 * 109.58713 * 173.14704 * 28 17 16 48 48 H 1.08997 * 109.58591 * 293.56859 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0104 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8291 -6.1447 0.0018 13 1 2.5221 -6.1642 0.8428 14 6 0.8399 -7.3056 0.1281 15 6 1.6065 -8.6298 0.1627 16 6 2.3854 -8.7985 -1.1456 17 7 3.2332 -7.6155 -1.3471 18 6 4.5570 -7.7480 -1.5629 19 8 5.2666 -6.7619 -1.6126 20 6 5.1446 -9.0887 -1.7390 21 6 6.4634 -9.4759 -1.4122 22 7 6.6005 -10.7373 -1.7151 23 7 5.3940 -11.2103 -2.2429 24 6 5.1390 -12.5772 -2.7046 25 6 6.1834 -12.9642 -3.7537 26 9 5.9396 -14.2693 -4.1949 27 6 4.5111 -10.1990 -2.2601 28 6 2.6115 -6.2850 -1.3027 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6849 -3.7146 -0.8894 33 1 0.4370 -4.7622 -0.8887 34 1 0.4376 -4.7619 0.8913 35 1 0.1627 -7.3003 -0.7260 36 1 0.2653 -7.1945 1.0477 37 1 0.9029 -9.4546 0.2762 38 1 2.3017 -8.6259 1.0021 39 1 1.6871 -8.8935 -1.9771 40 1 3.0098 -9.6902 -1.0891 41 1 7.2247 -8.8392 -0.9863 42 1 4.1436 -12.6321 -3.1454 43 1 5.2007 -13.2634 -1.8600 44 1 7.1787 -12.9094 -3.3129 45 1 6.1216 -12.2781 -4.5983 46 1 3.4919 -10.2462 -2.6144 47 1 3.3852 -5.5185 -1.3473 48 1 1.9320 -6.1709 -2.1472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269747574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:27 Heat of formation + Delta-G solvation = 1.868100 kcal Electronic energy + Delta-G solvation = -28874.770434 eV Core-core repulsion = 24688.033107 eV Total energy + Delta-G solvation = -4186.737327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.37336 -41.95749 -39.96638 -37.69722 -35.35602 -34.74087 -33.57891 -32.16486 -31.25275 -30.46014 -29.63990 -27.40483 -25.87894 -24.44876 -24.19994 -22.82183 -22.37223 -21.37803 -20.82196 -20.20616 -19.50385 -17.68806 -17.26726 -17.01005 -16.81220 -16.42326 -15.97440 -15.83413 -15.46569 -14.92045 -14.67715 -14.64984 -14.50258 -14.25339 -13.78107 -13.73371 -13.51986 -13.28990 -13.21781 -13.04527 -12.94769 -12.67911 -12.24812 -12.11639 -11.70429 -11.45568 -11.23314 -11.12481 -11.08394 -10.99780 -10.78863 -10.56915 -10.40652 -10.22373 -10.05138 -9.97810 -9.86981 -9.58857 -9.11288 -8.78564 -8.66322 -6.84049 -5.69620 -2.97574 1.04175 1.69027 1.87888 2.85332 3.16488 3.50164 3.50699 3.53578 3.55444 3.84183 4.07011 4.20461 4.29427 4.40430 4.49830 4.59319 4.65485 4.67171 4.72023 4.85121 4.95244 5.01523 5.09080 5.11154 5.16732 5.24010 5.43532 5.58081 5.62160 5.62930 5.71001 5.81036 5.90432 5.99970 6.02192 6.06699 6.20433 6.24646 6.31753 6.38258 6.48444 6.55675 6.94973 6.98041 7.05340 7.34125 7.77936 8.15503 8.49901 9.60664 10.19550 10.54245 11.53426 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.001933 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.823986 B =14478.152052 C =15321.254175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.096 4.096 13 H 0.074 0.926 14 C -0.115 4.115 15 C -0.134 4.134 16 C 0.095 3.905 17 N -0.608 5.608 18 C 0.591 3.409 19 O -0.533 6.533 20 C -0.275 4.275 21 C 0.110 3.890 22 N -0.299 5.299 23 N -0.365 5.365 24 C 0.102 3.898 25 C 0.052 3.948 26 F -0.207 7.207 27 C 0.094 3.906 28 C 0.116 3.884 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.017 0.983 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.196 0.804 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.189 0.811 47 H 0.101 0.899 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 -32.192 -5.330 33.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.156 4.156 12 C -0.116 4.116 13 H 0.092 0.908 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.028 4.028 17 N -0.341 5.341 18 C 0.379 3.621 19 O -0.410 6.410 20 C -0.290 4.290 21 C -0.078 4.078 22 N -0.118 5.118 23 N -0.145 5.145 24 C -0.020 4.020 25 C -0.004 4.004 26 F -0.188 7.188 27 C -0.056 4.056 28 C -0.005 4.005 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.213 0.787 42 H 0.129 0.871 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.206 0.794 47 H 0.119 0.881 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.189 -32.719 -5.441 33.938 hybrid contribution -0.613 1.513 0.033 1.633 sum 6.576 -31.206 -5.407 32.346 Atomic orbital electron populations 1.69650 1.05083 1.25634 1.58141 1.24737 0.95541 0.97668 1.03256 0.86256 0.78493 0.83517 0.77892 1.21264 1.21736 1.21300 1.19226 0.91074 0.84246 1.42234 0.91219 1.42364 1.05819 1.00118 1.89495 1.20716 0.93555 0.85539 0.97913 1.21727 0.98632 0.92961 1.02313 1.21380 0.97183 0.95057 0.97950 0.90760 1.21597 0.97701 0.93507 1.02484 1.21915 0.99353 0.98475 0.97481 1.22123 0.94039 0.88606 0.98061 1.47955 1.06998 1.07754 1.71406 1.17297 0.81308 0.87269 0.76231 1.90823 1.59830 1.39184 1.51166 1.20406 0.96409 0.95069 1.17119 1.24073 0.95692 0.91800 0.96200 1.77226 1.02489 1.12677 1.19421 1.48282 1.09386 1.09008 1.47783 1.22323 1.00878 0.79556 0.99257 1.22164 1.00456 0.79890 0.97849 1.92811 1.95955 1.39138 1.90868 1.23359 0.96375 0.87073 0.98755 1.21741 0.97808 0.83542 0.97439 0.93578 0.78392 0.96496 0.96112 0.91805 0.91582 0.91683 0.91437 0.90902 0.91434 0.91327 0.89451 0.78695 0.87079 0.87964 0.88887 0.89906 0.79381 0.88058 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.94 13.06 55.49 0.72 -28.22 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.12 29.55 -169.99 -5.02 18.09 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -19.31 5.60 -59.91 -0.34 -19.65 16 10 C 0.15 3.14 6.02 -4.04 -0.02 3.11 16 11 C -0.12 -1.87 4.80 -26.73 -0.13 -2.00 16 12 C -0.10 -1.21 2.32 -90.72 -0.21 -1.42 16 13 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 14 C -0.12 -1.10 5.17 -26.69 -0.14 -1.24 16 15 C -0.13 -1.00 6.08 -26.61 -0.16 -1.17 16 16 C 0.09 0.67 5.21 -3.71 -0.02 0.65 16 17 N -0.61 -6.72 2.98 -174.30 -0.52 -7.24 16 18 C 0.59 7.65 7.62 -12.52 -0.10 7.55 16 19 O -0.53 -9.24 16.45 5.28 0.09 -9.16 16 20 C -0.28 -2.72 5.56 -105.07 -0.58 -3.30 16 21 C 0.11 1.07 11.94 -16.98 -0.20 0.87 16 22 N -0.30 -2.71 12.33 30.86 0.38 -2.33 16 23 N -0.36 -2.35 3.65 -60.80 -0.22 -2.57 16 24 C 0.10 0.33 6.94 -4.04 -0.03 0.30 16 25 C 0.05 0.22 7.73 37.16 0.29 0.50 16 26 F -0.21 -1.24 17.36 2.25 0.04 -1.20 16 27 C 0.09 0.61 9.03 -16.56 -0.15 0.46 16 28 C 0.12 1.52 5.31 -3.93 -0.02 1.50 16 29 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.38 10.44 7.67 -40.82 -0.31 10.13 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.45 6.71 -51.93 -0.35 0.10 16 33 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.48 4.20 -51.93 -0.22 0.26 16 41 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.11 0.08 8.06 -51.93 -0.42 -0.34 16 43 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.19 0.59 6.41 -52.48 -0.34 0.26 16 47 H 0.10 1.63 5.71 -51.93 -0.30 1.34 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -36.41 390.32 -8.11 -44.51 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.40 Total: 3.70 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.72 Total: -1.83 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.03 Total: -60.00 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.41 -8.11 -44.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269747574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.380 kcal (2) G-P(sol) polarization free energy of solvation -36.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds