Wall clock time and date at job start Tue Mar 31 2020 21:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46869 * 239.99817 * 3 2 1 5 5 H 1.48505 * 109.46845 * 359.97438 * 3 2 1 6 6 H 1.48486 * 109.47406 * 119.99618 * 3 2 1 7 7 C 1.38817 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99940 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99812 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00086 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47273 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47035 * 180.02562 * 11 10 9 13 13 H 1.08991 * 109.49661 * 54.93954 * 12 11 10 14 14 C 1.53042 * 109.49524 * 175.00456 * 12 11 10 15 15 C 1.53043 * 109.53488 * 181.35018 * 14 12 11 16 16 C 1.53195 * 109.31046 * 298.62896 * 15 14 12 17 17 N 1.46926 * 108.77270 * 54.63977 * 16 15 14 18 18 C 1.34779 * 120.63089 * 126.36601 * 17 16 15 19 19 O 1.21597 * 119.99907 * 186.38108 * 18 17 16 20 20 C 1.47432 * 119.99949 * 6.38521 * 18 17 16 21 21 C 1.41285 * 126.41477 * 208.93388 * 20 18 17 22 22 N 1.30446 * 108.02166 * 180.02562 * 21 20 18 23 23 N 1.39930 * 108.89775 * 0.02562 * 22 21 20 24 24 C 1.46506 * 125.75188 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.46993 * 305.02255 * 24 23 22 26 26 F 1.39901 * 109.46924 * 180.02562 * 25 24 23 27 27 C 1.34260 * 108.49312 * 0.22890 * 23 22 21 28 28 C 1.46925 * 118.73828 * 306.63939 * 17 16 15 29 29 H 0.96995 * 120.00378 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00168 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46693 * 60.00310 * 10 9 7 32 32 H 1.08993 * 109.47342 * 300.00092 * 10 9 7 33 33 H 1.09007 * 109.47026 * 60.00215 * 11 10 9 34 34 H 1.08998 * 109.47745 * 300.00516 * 11 10 9 35 35 H 1.09003 * 109.46205 * 61.32840 * 14 12 11 36 36 H 1.09003 * 109.44955 * 301.36076 * 14 12 11 37 37 H 1.09008 * 109.49386 * 178.68239 * 15 14 12 38 38 H 1.08992 * 109.50183 * 58.58215 * 15 14 12 39 39 H 1.08997 * 109.59046 * 294.85260 * 16 15 14 40 40 H 1.09000 * 109.69970 * 174.49625 * 16 15 14 41 41 H 1.08003 * 125.98891 * 0.02562 * 21 20 18 42 42 H 1.08999 * 109.46945 * 185.02723 * 24 23 22 43 43 H 1.09000 * 109.47300 * 65.02748 * 24 23 22 44 44 H 1.08999 * 109.46893 * 60.00437 * 25 24 23 45 45 H 1.08996 * 109.47349 * 299.99893 * 25 24 23 46 46 H 1.08006 * 126.28826 * 179.74822 * 27 23 22 47 47 H 1.09002 * 109.58713 * 173.14704 * 28 17 16 48 48 H 1.08997 * 109.58591 * 293.56859 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2124 7 6 2.0104 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0012 12 6 1.8291 -6.1447 0.0018 13 1 2.5221 -6.1642 0.8428 14 6 0.8399 -7.3056 0.1281 15 6 1.6065 -8.6298 0.1627 16 6 2.3854 -8.7985 -1.1456 17 7 3.2332 -7.6155 -1.3471 18 6 4.5570 -7.7480 -1.5629 19 8 5.2666 -6.7619 -1.6126 20 6 5.1446 -9.0887 -1.7390 21 6 6.4634 -9.4759 -1.4122 22 7 6.6005 -10.7373 -1.7151 23 7 5.3940 -11.2103 -2.2429 24 6 5.1390 -12.5772 -2.7046 25 6 6.1834 -12.9642 -3.7537 26 9 5.9396 -14.2693 -4.1949 27 6 4.5111 -10.1990 -2.2601 28 6 2.6115 -6.2850 -1.3027 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6849 -3.7146 -0.8894 33 1 0.4370 -4.7622 -0.8887 34 1 0.4376 -4.7619 0.8913 35 1 0.1627 -7.3003 -0.7260 36 1 0.2653 -7.1945 1.0477 37 1 0.9029 -9.4546 0.2762 38 1 2.3017 -8.6259 1.0021 39 1 1.6871 -8.8935 -1.9771 40 1 3.0098 -9.6902 -1.0891 41 1 7.2247 -8.8392 -0.9863 42 1 4.1436 -12.6321 -3.1454 43 1 5.2007 -13.2634 -1.8600 44 1 7.1787 -12.9094 -3.3129 45 1 6.1216 -12.2781 -4.5983 46 1 3.4919 -10.2462 -2.6144 47 1 3.3852 -5.5185 -1.3473 48 1 1.9320 -6.1709 -2.1472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269747574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:26 Heat of formation + Delta-G solvation = -22.673787 kcal Electronic energy + Delta-G solvation = -28875.834650 eV Core-core repulsion = 24688.033107 eV Total energy + Delta-G solvation = -4187.801543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.76412 -42.59170 -40.85235 -38.75103 -36.95024 -35.24933 -35.00561 -33.38949 -32.42934 -31.57111 -30.23910 -28.85093 -26.71251 -25.89099 -24.86005 -24.04300 -23.32638 -22.15923 -21.90876 -21.18824 -20.25921 -19.15260 -18.25368 -17.87183 -17.39783 -17.15995 -16.72299 -16.63791 -16.37883 -16.20190 -15.69929 -15.52410 -15.34012 -15.25583 -15.17413 -14.87785 -14.69966 -14.32905 -14.16468 -13.94584 -13.78531 -13.67518 -13.35308 -12.95571 -12.81311 -12.61296 -12.55477 -12.31561 -12.17065 -12.12954 -11.92090 -11.87791 -11.73685 -11.68428 -11.49986 -11.15885 -10.95792 -10.91771 -10.59124 -9.84384 -9.50321 -9.01888 -7.97203 -5.26271 0.46418 1.10653 1.23606 1.45140 1.48798 1.55102 2.00224 2.32104 2.54651 3.12825 3.35350 3.52969 3.63757 3.67859 3.72606 3.84166 3.91403 3.98984 4.05358 4.11703 4.13794 4.17904 4.27273 4.38281 4.45981 4.51863 4.54045 4.54888 4.61961 4.71344 4.75942 4.78071 4.87847 4.91072 4.96432 5.08827 5.17231 5.27126 5.32412 5.34911 5.41926 5.46723 5.54852 5.59579 5.77399 6.25720 6.39032 6.52404 7.22826 7.31579 8.07041 8.32323 9.25862 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.022452 B = 0.001933 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.823986 B =14478.152052 C =15321.254175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.745 5.745 10 C 0.149 3.851 11 C -0.103 4.103 12 C -0.085 4.085 13 H 0.056 0.944 14 C -0.111 4.111 15 C -0.129 4.129 16 C 0.089 3.911 17 N -0.604 5.604 18 C 0.586 3.414 19 O -0.595 6.595 20 C -0.305 4.305 21 C 0.095 3.905 22 N -0.317 5.317 23 N -0.356 5.356 24 C 0.098 3.902 25 C 0.053 3.947 26 F -0.216 7.216 27 C 0.125 3.875 28 C 0.119 3.881 29 H 0.253 0.747 30 H 0.376 0.624 31 H 0.006 0.994 32 H 0.015 0.985 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.190 0.810 42 H 0.149 0.851 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.232 0.768 47 H 0.059 0.941 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.444 -35.098 -6.058 35.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.803 3.197 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.388 5.388 10 C 0.023 3.977 11 C -0.142 4.142 12 C -0.105 4.105 13 H 0.075 0.925 14 C -0.149 4.149 15 C -0.167 4.167 16 C -0.032 4.032 17 N -0.335 5.335 18 C 0.376 3.624 19 O -0.477 6.477 20 C -0.320 4.320 21 C -0.092 4.092 22 N -0.137 5.137 23 N -0.135 5.135 24 C -0.022 4.022 25 C -0.003 4.003 26 F -0.197 7.197 27 C -0.026 4.026 28 C -0.004 4.004 29 H 0.062 0.938 30 H 0.208 0.792 31 H 0.024 0.976 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.207 0.793 42 H 0.167 0.833 43 H 0.130 0.870 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.248 0.752 47 H 0.078 0.922 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.739 -35.708 -6.161 36.687 hybrid contribution -0.143 2.309 0.244 2.326 sum 5.596 -33.399 -5.917 34.377 Atomic orbital electron populations 1.69797 1.06433 1.26266 1.59188 1.25578 0.96528 1.01056 1.03426 0.85201 0.77280 0.79078 0.78149 1.20521 1.21499 1.20494 1.19584 0.91334 0.85701 1.41823 0.91381 1.42560 1.05654 1.01189 1.89422 1.20853 0.94431 0.85547 0.96865 1.21590 0.97543 0.92546 1.02504 1.21254 0.97356 0.94846 0.97076 0.92513 1.21577 0.97056 0.92970 1.03263 1.21912 0.99501 0.98171 0.97129 1.22507 0.94253 0.87373 0.99084 1.48020 1.06920 1.08183 1.70412 1.17783 0.81528 0.87799 0.75256 1.90783 1.61363 1.41382 1.54162 1.20185 0.96925 0.94689 1.20206 1.24116 0.96041 0.92284 0.96733 1.77194 1.04159 1.12228 1.20072 1.48529 1.08479 1.10105 1.46348 1.22649 1.02317 0.77781 0.99470 1.22152 1.00422 0.79383 0.98313 1.92793 1.95991 1.39946 1.91016 1.23817 0.97437 0.85399 0.95984 1.21518 0.96745 0.84106 0.98003 0.93823 0.79227 0.97565 0.96754 0.91264 0.91571 0.90236 0.91217 0.87424 0.92838 0.88154 0.87362 0.79309 0.83302 0.86956 0.89974 0.89430 0.75190 0.92198 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 2 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 48.01 29.55 68.60 2.03 50.04 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.25 -15.07 9.99 84.03 0.84 -14.23 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.75 -40.36 5.60 -343.46 -1.92 -42.29 16 10 C 0.15 6.50 6.02 86.38 0.52 7.02 16 11 C -0.10 -3.30 4.80 30.59 0.15 -3.16 16 12 C -0.09 -2.13 2.32 -10.86 -0.03 -2.16 16 13 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 14 C -0.11 -1.82 5.17 30.62 0.16 -1.66 16 15 C -0.13 -1.44 6.08 30.67 0.19 -1.25 16 16 C 0.09 0.89 5.21 86.36 0.45 1.34 16 17 N -0.60 -12.69 2.98 -823.62 -2.45 -15.15 16 18 C 0.59 15.43 7.62 86.66 0.66 16.09 16 19 O -0.60 -22.26 16.45 -4.02 -0.07 -22.33 16 20 C -0.31 -5.75 5.56 -20.15 -0.11 -5.86 16 21 C 0.10 1.89 11.94 85.65 1.02 2.92 16 22 N -0.32 -5.43 12.33 -56.28 -0.69 -6.12 16 23 N -0.36 -3.49 3.65 -346.28 -1.26 -4.75 16 24 C 0.10 0.26 6.94 86.38 0.60 0.86 16 25 C 0.05 0.32 7.73 71.98 0.56 0.87 16 26 F -0.22 -2.14 17.36 44.97 0.78 -1.36 16 27 C 0.12 1.16 9.03 84.28 0.76 1.92 16 28 C 0.12 3.13 5.31 86.22 0.46 3.59 16 29 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.38 21.03 7.67 -92.71 -0.71 20.32 16 31 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.01 0.65 6.71 -2.39 -0.02 0.64 16 33 H 0.07 2.14 8.14 -2.38 -0.02 2.13 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.11 0.65 4.20 -2.39 -0.01 0.64 16 41 H 0.19 3.68 8.06 -2.91 -0.02 3.65 16 42 H 0.15 -0.65 8.06 -2.39 -0.02 -0.67 16 43 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 45 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.23 0.03 6.41 -2.91 -0.02 0.02 16 47 H 0.06 2.08 5.71 -2.39 -0.01 2.07 16 48 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -83.71 390.32 3.64 -80.07 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.26 Total: 19.78 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.69 Total: 2.36 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -6.05 Total: -128.56 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.07 Total: -22.33 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.78 Total: -1.36 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -83.71 3.64 -80.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269747574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.393 kcal (2) G-P(sol) polarization free energy of solvation -83.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds