Wall clock time and date at job start Tue Mar 31 2020 21:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99955 * 2 1 4 4 H 1.48494 * 109.47175 * 270.00149 * 3 2 1 5 5 H 1.48506 * 109.47026 * 30.00435 * 3 2 1 6 6 H 1.48499 * 109.47017 * 150.00132 * 3 2 1 7 7 C 1.38810 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99970 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99945 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47007 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47290 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.49777 * 304.93580 * 12 11 10 14 14 C 1.53044 * 109.49810 * 184.83443 * 12 11 10 15 15 C 1.53045 * 109.53619 * 178.68365 * 14 12 11 16 16 C 1.52756 * 109.38109 * 61.24313 * 15 14 12 17 17 N 1.46928 * 109.00908 * 305.58325 * 16 15 14 18 18 C 1.34777 * 120.63058 * 233.58555 * 17 16 15 19 19 O 1.21608 * 119.99441 * 183.42645 * 18 17 16 20 20 C 1.47420 * 120.00078 * 3.42568 * 18 17 16 21 21 C 1.41292 * 126.41644 * 317.07136 * 20 18 17 22 22 N 1.30445 * 108.02381 * 180.02562 * 21 20 18 23 23 N 1.39934 * 108.90001 * 359.78268 * 22 21 20 24 24 C 1.46498 * 125.75531 * 180.23560 * 23 22 21 25 25 C 1.52996 * 109.47381 * 305.15015 * 24 23 22 26 26 F 1.39898 * 109.46837 * 180.02562 * 25 24 23 27 27 C 1.34266 * 108.48678 * 0.37018 * 23 22 21 28 28 C 1.46924 * 118.73485 * 53.31639 * 17 16 15 29 29 H 0.96995 * 120.00461 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99746 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47591 * 59.99200 * 10 9 7 32 32 H 1.09002 * 109.46734 * 299.98794 * 10 9 7 33 33 H 1.08998 * 109.47267 * 59.99407 * 11 10 9 34 34 H 1.09009 * 109.47060 * 299.99786 * 11 10 9 35 35 H 1.08995 * 109.46354 * 298.70513 * 14 12 11 36 36 H 1.09001 * 109.45471 * 58.66522 * 14 12 11 37 37 H 1.09000 * 109.49219 * 181.32101 * 15 14 12 38 38 H 1.09004 * 109.49664 * 301.38087 * 15 14 12 39 39 H 1.09003 * 109.50532 * 185.70495 * 16 15 14 40 40 H 1.08992 * 109.43719 * 65.42408 * 16 15 14 41 41 H 1.08004 * 125.98741 * 359.97438 * 21 20 18 42 42 H 1.09004 * 109.46887 * 65.15793 * 24 23 22 43 43 H 1.09003 * 109.46786 * 185.15190 * 24 23 22 44 44 H 1.08998 * 109.47421 * 299.99951 * 25 24 23 45 45 H 1.09003 * 109.47017 * 60.00317 * 25 24 23 46 46 H 1.08000 * 126.28585 * 179.90521 * 27 23 22 47 47 H 1.08996 * 109.58860 * 66.42659 * 28 17 16 48 48 H 1.09005 * 109.58388 * 186.85478 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 6 1.8289 -6.1447 -0.0029 13 1 2.5203 -6.1652 -0.8452 14 6 0.8393 -7.3058 -0.1251 15 6 1.6058 -8.6301 -0.1589 16 6 2.3883 -8.7962 1.1425 17 7 3.2356 -7.6132 1.3458 18 6 4.5598 -7.7455 1.5592 19 8 5.2398 -6.7636 1.7880 20 6 5.1837 -9.0805 1.5155 21 6 4.6668 -10.2669 2.0825 22 7 5.5066 -11.2332 1.8319 23 7 6.5826 -10.7199 1.0992 24 6 7.7345 -11.4870 0.6186 25 6 8.3921 -12.2108 1.7953 26 9 9.4924 -12.9428 1.3363 27 6 6.3828 -9.4053 0.9135 28 6 2.6130 -6.2831 1.3059 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6842 -3.7149 0.8887 32 1 2.6853 -3.7141 -0.8913 33 1 0.4375 -4.7617 -0.8924 34 1 0.4369 -4.7622 0.8876 35 1 0.1639 -7.2989 0.7303 36 1 0.2628 -7.1963 -1.0437 37 1 0.9019 -9.4550 -0.2695 38 1 2.2989 -8.6279 -1.0002 39 1 3.0133 -9.6870 1.0802 40 1 1.6914 -8.8939 1.9748 41 1 3.7394 -10.3578 2.6284 42 1 7.4021 -12.2184 -0.1181 43 1 8.4554 -10.8106 0.1594 44 1 8.7245 -11.4794 2.5319 45 1 7.6712 -12.8872 2.2545 46 1 7.0375 -8.7275 0.3859 47 1 1.9347 -6.1716 2.1518 48 1 3.3863 -5.5162 1.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269747575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:31 Heat of formation + Delta-G solvation = -1.580523 kcal Electronic energy + Delta-G solvation = -28804.107878 eV Core-core repulsion = 24617.221008 eV Total energy + Delta-G solvation = -4186.886871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.34576 -41.91360 -39.94817 -37.67972 -35.38323 -34.76645 -33.40854 -32.14285 -30.97671 -30.69310 -29.65879 -27.42168 -25.82129 -24.57707 -24.02135 -22.76798 -22.39598 -21.33354 -20.80597 -20.17030 -19.34527 -17.97880 -17.17322 -16.97259 -16.69395 -16.40848 -16.01792 -15.79807 -15.32905 -14.94186 -14.75689 -14.64118 -14.44845 -14.18795 -13.82861 -13.65652 -13.48721 -13.36095 -13.18497 -12.99000 -12.94265 -12.63261 -12.23170 -12.06771 -11.70997 -11.38806 -11.31828 -11.11286 -11.06119 -10.98859 -10.80849 -10.55586 -10.40516 -10.20910 -10.04252 -9.94239 -9.85116 -9.59407 -9.09001 -8.79657 -8.63453 -6.84500 -5.70259 -2.98221 1.16661 1.70888 1.84665 2.78864 3.12166 3.48459 3.53377 3.54184 3.55623 3.89124 4.20464 4.26079 4.33688 4.46584 4.56237 4.60308 4.65622 4.69354 4.78195 4.87865 4.97481 5.00760 5.12734 5.17290 5.22101 5.33224 5.47539 5.61178 5.64250 5.67020 5.74301 5.81791 5.92348 5.93837 6.03394 6.08898 6.25693 6.27358 6.32281 6.38675 6.48215 6.57193 6.94285 6.97681 7.03837 7.35785 7.77401 8.15506 8.49241 9.60058 10.19048 10.53696 11.52858 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.001984 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.177384 B =14111.604181 C =15323.049630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.150 3.850 11 C -0.118 4.118 12 C -0.095 4.095 13 H 0.073 0.927 14 C -0.116 4.116 15 C -0.134 4.134 16 C 0.098 3.902 17 N -0.604 5.604 18 C 0.592 3.408 19 O -0.538 6.538 20 C -0.279 4.279 21 C 0.083 3.917 22 N -0.296 5.296 23 N -0.366 5.366 24 C 0.103 3.897 25 C 0.053 3.947 26 F -0.207 7.207 27 C 0.122 3.878 28 C 0.116 3.884 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.021 0.979 32 H 0.016 0.984 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.194 0.806 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.188 0.812 47 H 0.069 0.931 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.286 -30.484 1.736 32.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.157 4.157 12 C -0.115 4.115 13 H 0.091 0.909 14 C -0.153 4.153 15 C -0.172 4.172 16 C -0.025 4.025 17 N -0.336 5.336 18 C 0.380 3.620 19 O -0.415 6.415 20 C -0.294 4.294 21 C -0.105 4.105 22 N -0.116 5.116 23 N -0.146 5.146 24 C -0.019 4.019 25 C -0.003 4.003 26 F -0.188 7.188 27 C -0.028 4.028 28 C -0.006 4.006 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.211 0.789 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.101 0.899 45 H 0.110 0.890 46 H 0.205 0.795 47 H 0.087 0.913 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.196 -31.185 1.962 33.192 hybrid contribution -0.088 1.762 -0.233 1.780 sum 11.109 -29.423 1.730 31.498 Atomic orbital electron populations 1.69658 1.05082 1.25524 1.58181 1.24737 0.95545 0.97673 1.03279 0.86184 0.78699 0.83855 0.77474 1.21793 1.21804 1.20735 1.19265 0.91082 0.84242 1.42128 0.91193 1.42373 1.05842 1.00122 1.89466 1.20717 0.93574 0.85570 0.97851 1.21731 0.98644 0.92950 1.02352 1.21458 0.97179 0.95082 0.97768 0.90860 1.21600 0.97709 0.93530 1.02482 1.21836 0.99333 0.98416 0.97623 1.21937 0.94088 0.88480 0.97979 1.47958 1.06913 1.07870 1.70888 1.17288 0.81371 0.87059 0.76332 1.90825 1.62153 1.39640 1.48868 1.20267 0.99261 0.95533 1.14294 1.24145 0.98769 0.89172 0.98369 1.77149 0.96986 1.22910 1.14567 1.48202 1.17666 1.06367 1.42347 1.22315 0.85139 0.97229 0.97227 1.22159 0.86208 0.95909 0.96025 1.92810 1.55908 1.79313 1.90744 1.22931 0.96556 0.85384 0.97915 1.21837 0.97798 0.83510 0.97432 0.93618 0.78374 0.96109 0.96568 0.91583 0.91749 0.91632 0.91494 0.90855 0.91639 0.89219 0.91220 0.78914 0.88035 0.86988 0.89886 0.88958 0.79522 0.91262 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.92 13.06 55.49 0.72 -28.20 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 4 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.73 -19.29 5.60 -59.91 -0.34 -19.63 16 10 C 0.15 3.13 6.02 -4.04 -0.02 3.10 16 11 C -0.12 -1.88 4.80 -26.73 -0.13 -2.01 16 12 C -0.10 -1.21 2.34 -90.50 -0.21 -1.42 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 14 C -0.12 -1.14 5.17 -26.69 -0.14 -1.28 16 15 C -0.13 -1.07 6.06 -26.83 -0.16 -1.23 16 16 C 0.10 0.78 5.67 -3.93 -0.02 0.76 16 17 N -0.60 -6.88 2.98 -174.30 -0.52 -7.40 16 18 C 0.59 7.66 7.59 -12.52 -0.09 7.57 16 19 O -0.54 -9.24 16.52 5.27 0.09 -9.15 16 20 C -0.28 -2.74 5.33 -105.07 -0.56 -3.31 16 21 C 0.08 0.67 9.57 -16.98 -0.16 0.50 16 22 N -0.30 -2.49 12.33 30.86 0.38 -2.11 16 23 N -0.37 -2.55 3.65 -60.81 -0.22 -2.77 16 24 C 0.10 0.41 6.94 -4.04 -0.03 0.38 16 25 C 0.05 0.24 7.73 37.16 0.29 0.53 16 26 F -0.21 -1.34 17.36 2.25 0.04 -1.30 16 27 C 0.12 0.97 11.44 -16.56 -0.19 0.78 16 28 C 0.12 1.54 5.32 -3.71 -0.02 1.52 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.38 10.45 7.67 -40.82 -0.31 10.13 16 31 H 0.02 0.45 6.70 -51.93 -0.35 0.10 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.61 4.16 -51.93 -0.22 0.39 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.19 1.07 7.11 -52.48 -0.37 0.69 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.11 0.22 8.06 -51.93 -0.42 -0.20 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.10 1.62 5.74 -51.93 -0.30 1.32 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -36.10 391.31 -8.11 -44.21 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.43 Total: 4.12 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.70 Total: -1.72 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.03 Total: -60.10 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.10 -8.11 -44.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269747575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.627 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds