Wall clock time and date at job start Tue Mar 31 2020 21:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99955 * 2 1 4 4 H 1.48494 * 109.47175 * 270.00149 * 3 2 1 5 5 H 1.48506 * 109.47026 * 30.00435 * 3 2 1 6 6 H 1.48499 * 109.47017 * 150.00132 * 3 2 1 7 7 C 1.38810 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99970 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00262 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99945 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47007 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47290 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.49777 * 304.93580 * 12 11 10 14 14 C 1.53044 * 109.49810 * 184.83443 * 12 11 10 15 15 C 1.53045 * 109.53619 * 178.68365 * 14 12 11 16 16 C 1.52756 * 109.38109 * 61.24313 * 15 14 12 17 17 N 1.46928 * 109.00908 * 305.58325 * 16 15 14 18 18 C 1.34777 * 120.63058 * 233.58555 * 17 16 15 19 19 O 1.21608 * 119.99441 * 183.42645 * 18 17 16 20 20 C 1.47420 * 120.00078 * 3.42568 * 18 17 16 21 21 C 1.41292 * 126.41644 * 317.07136 * 20 18 17 22 22 N 1.30445 * 108.02381 * 180.02562 * 21 20 18 23 23 N 1.39934 * 108.90001 * 359.78268 * 22 21 20 24 24 C 1.46498 * 125.75531 * 180.23560 * 23 22 21 25 25 C 1.52996 * 109.47381 * 305.15015 * 24 23 22 26 26 F 1.39898 * 109.46837 * 180.02562 * 25 24 23 27 27 C 1.34266 * 108.48678 * 0.37018 * 23 22 21 28 28 C 1.46924 * 118.73485 * 53.31639 * 17 16 15 29 29 H 0.96995 * 120.00461 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99746 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47591 * 59.99200 * 10 9 7 32 32 H 1.09002 * 109.46734 * 299.98794 * 10 9 7 33 33 H 1.08998 * 109.47267 * 59.99407 * 11 10 9 34 34 H 1.09009 * 109.47060 * 299.99786 * 11 10 9 35 35 H 1.08995 * 109.46354 * 298.70513 * 14 12 11 36 36 H 1.09001 * 109.45471 * 58.66522 * 14 12 11 37 37 H 1.09000 * 109.49219 * 181.32101 * 15 14 12 38 38 H 1.09004 * 109.49664 * 301.38087 * 15 14 12 39 39 H 1.09003 * 109.50532 * 185.70495 * 16 15 14 40 40 H 1.08992 * 109.43719 * 65.42408 * 16 15 14 41 41 H 1.08004 * 125.98741 * 359.97438 * 21 20 18 42 42 H 1.09004 * 109.46887 * 65.15793 * 24 23 22 43 43 H 1.09003 * 109.46786 * 185.15190 * 24 23 22 44 44 H 1.08998 * 109.47421 * 299.99951 * 25 24 23 45 45 H 1.09003 * 109.47017 * 60.00317 * 25 24 23 46 46 H 1.08000 * 126.28585 * 179.90521 * 27 23 22 47 47 H 1.08996 * 109.58860 * 66.42659 * 28 17 16 48 48 H 1.09005 * 109.58388 * 186.85478 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 6 1.8289 -6.1447 -0.0029 13 1 2.5203 -6.1652 -0.8452 14 6 0.8393 -7.3058 -0.1251 15 6 1.6058 -8.6301 -0.1589 16 6 2.3883 -8.7962 1.1425 17 7 3.2356 -7.6132 1.3458 18 6 4.5598 -7.7455 1.5592 19 8 5.2398 -6.7636 1.7880 20 6 5.1837 -9.0805 1.5155 21 6 4.6668 -10.2669 2.0825 22 7 5.5066 -11.2332 1.8319 23 7 6.5826 -10.7199 1.0992 24 6 7.7345 -11.4870 0.6186 25 6 8.3921 -12.2108 1.7953 26 9 9.4924 -12.9428 1.3363 27 6 6.3828 -9.4053 0.9135 28 6 2.6130 -6.2831 1.3059 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0016 31 1 2.6842 -3.7149 0.8887 32 1 2.6853 -3.7141 -0.8913 33 1 0.4375 -4.7617 -0.8924 34 1 0.4369 -4.7622 0.8876 35 1 0.1639 -7.2989 0.7303 36 1 0.2628 -7.1963 -1.0437 37 1 0.9019 -9.4550 -0.2695 38 1 2.2989 -8.6279 -1.0002 39 1 3.0133 -9.6870 1.0802 40 1 1.6914 -8.8939 1.9748 41 1 3.7394 -10.3578 2.6284 42 1 7.4021 -12.2184 -0.1181 43 1 8.4554 -10.8106 0.1594 44 1 8.7245 -11.4794 2.5319 45 1 7.6712 -12.8872 2.2545 46 1 7.0375 -8.7275 0.3859 47 1 1.9347 -6.1716 2.1518 48 1 3.3863 -5.5162 1.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269747575.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:30 Heat of formation + Delta-G solvation = -25.235413 kcal Electronic energy + Delta-G solvation = -28805.133631 eV Core-core repulsion = 24617.221008 eV Total energy + Delta-G solvation = -4187.912624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.78795 -42.54914 -40.86051 -38.75388 -36.94795 -35.45652 -34.77795 -33.34531 -32.33381 -31.54992 -30.38078 -28.85388 -26.69606 -25.91925 -24.86116 -23.99551 -23.35072 -22.16543 -21.82401 -21.19793 -20.14514 -19.16139 -18.59913 -17.68667 -17.33389 -17.21027 -16.71893 -16.63864 -16.41172 -16.14210 -15.70052 -15.57630 -15.40162 -15.25906 -15.12313 -14.86089 -14.68851 -14.30169 -14.20150 -13.92585 -13.86514 -13.62644 -13.33944 -12.95646 -12.82575 -12.65014 -12.54409 -12.27066 -12.23282 -12.12943 -11.92835 -11.87194 -11.81533 -11.68812 -11.50554 -11.16398 -10.92307 -10.89919 -10.59152 -9.82120 -9.51507 -9.01491 -7.97021 -5.26063 0.53185 1.15209 1.21179 1.45412 1.47578 1.56475 1.91241 2.26332 2.54692 3.13912 3.35812 3.53572 3.62962 3.71803 3.74575 3.85189 3.90710 3.97710 4.04019 4.11290 4.14983 4.17368 4.24044 4.37293 4.44026 4.51464 4.53459 4.59068 4.67100 4.72991 4.75875 4.76014 4.89371 4.92873 4.96187 5.09071 5.16435 5.26393 5.33689 5.35354 5.41459 5.47165 5.54301 5.60425 5.74533 6.25991 6.42779 6.48538 7.20266 7.31772 8.07501 8.32286 9.26342 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.001984 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.177384 B =14111.604181 C =15323.049630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.250 4.250 8 H 0.070 0.930 9 N -0.746 5.746 10 C 0.150 3.850 11 C -0.104 4.104 12 C -0.083 4.083 13 H 0.062 0.938 14 C -0.112 4.112 15 C -0.128 4.128 16 C 0.095 3.905 17 N -0.600 5.600 18 C 0.589 3.411 19 O -0.594 6.594 20 C -0.303 4.303 21 C 0.090 3.910 22 N -0.310 5.310 23 N -0.359 5.359 24 C 0.099 3.901 25 C 0.056 3.944 26 F -0.217 7.217 27 C 0.127 3.873 28 C 0.118 3.882 29 H 0.253 0.747 30 H 0.375 0.625 31 H 0.015 0.985 32 H 0.010 0.990 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.216 0.784 42 H 0.113 0.887 43 H 0.135 0.865 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.203 0.797 47 H 0.075 0.925 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.408 -32.641 1.500 34.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.382 4.382 8 H 0.087 0.913 9 N -0.389 5.389 10 C 0.023 3.977 11 C -0.143 4.143 12 C -0.103 4.103 13 H 0.081 0.919 14 C -0.149 4.149 15 C -0.166 4.166 16 C -0.027 4.027 17 N -0.331 5.331 18 C 0.378 3.622 19 O -0.475 6.475 20 C -0.318 4.318 21 C -0.097 4.097 22 N -0.130 5.130 23 N -0.138 5.138 24 C -0.022 4.022 25 C 0.000 4.000 26 F -0.198 7.198 27 C -0.024 4.024 28 C -0.004 4.004 29 H 0.061 0.939 30 H 0.207 0.793 31 H 0.033 0.967 32 H 0.028 0.972 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.131 0.869 43 H 0.153 0.847 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.220 0.780 47 H 0.093 0.907 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.324 -33.424 1.716 35.332 hybrid contribution -0.072 2.365 -0.167 2.372 sum 11.252 -31.060 1.549 33.071 Atomic orbital electron populations 1.69806 1.06472 1.26169 1.59317 1.25585 0.96525 1.01098 1.03521 0.85125 0.77637 0.79353 0.77569 1.21144 1.21702 1.19780 1.19623 0.91361 0.85643 1.41574 0.91252 1.42580 1.05670 1.01240 1.89399 1.20857 0.94403 0.85433 0.96971 1.21595 0.97609 0.92613 1.02456 1.21322 0.97331 0.94679 0.96979 0.91950 1.21578 0.97113 0.93029 1.03190 1.21818 0.99467 0.98091 0.97188 1.22231 0.94194 0.87397 0.98866 1.48029 1.06992 1.08131 1.69986 1.17757 0.81506 0.87626 0.75279 1.90789 1.63438 1.41678 1.51607 1.20095 1.00523 0.94528 1.16658 1.24445 0.99396 0.88064 0.97840 1.77135 0.97479 1.23258 1.15115 1.48385 1.17826 1.06127 1.41467 1.22563 0.84669 0.97807 0.97121 1.22143 0.85752 0.95798 0.96272 1.92790 1.56512 1.79624 1.90893 1.23203 0.96071 0.85983 0.97112 1.21621 0.96819 0.84029 0.97951 0.93863 0.79275 0.96746 0.97237 0.91483 0.91513 0.90635 0.91026 0.87900 0.92423 0.87602 0.89118 0.76724 0.86902 0.84717 0.89676 0.89198 0.78000 0.90702 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 2 C -0.07 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 47.80 29.55 68.60 2.03 49.83 16 4 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -14.82 9.99 84.03 0.84 -13.98 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.75 -40.18 5.60 -343.44 -1.92 -42.10 16 10 C 0.15 6.43 6.02 86.38 0.52 6.95 16 11 C -0.10 -3.34 4.80 30.59 0.15 -3.19 16 12 C -0.08 -2.08 2.34 -10.71 -0.03 -2.11 16 13 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 14 C -0.11 -1.95 5.17 30.62 0.16 -1.79 16 15 C -0.13 -1.65 6.06 30.53 0.19 -1.46 16 16 C 0.09 1.24 5.67 86.22 0.49 1.73 16 17 N -0.60 -13.29 2.98 -823.63 -2.45 -15.75 16 18 C 0.59 15.34 7.59 86.66 0.66 16.00 16 19 O -0.59 -21.40 16.52 -4.06 -0.07 -21.46 16 20 C -0.30 -5.65 5.33 -20.16 -0.11 -5.76 16 21 C 0.09 1.26 9.57 85.65 0.82 2.08 16 22 N -0.31 -4.55 12.33 -56.27 -0.69 -5.24 16 23 N -0.36 -4.28 3.65 -346.30 -1.26 -5.55 16 24 C 0.10 0.57 6.94 86.38 0.60 1.17 16 25 C 0.06 0.42 7.73 71.98 0.56 0.98 16 26 F -0.22 -2.51 17.36 44.97 0.78 -1.73 16 27 C 0.13 1.86 11.44 84.27 0.96 2.83 16 28 C 0.12 3.18 5.32 86.36 0.46 3.64 16 29 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.38 20.99 7.67 -92.71 -0.71 20.28 16 31 H 0.01 0.65 6.70 -2.39 -0.02 0.63 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.11 1.10 4.16 -2.39 -0.01 1.09 16 40 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.22 1.76 7.11 -2.91 -0.02 1.74 16 42 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.13 0.18 8.06 -2.39 -0.02 0.16 16 44 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.06 2.18 5.74 -2.38 -0.01 2.17 16 Total: -1.00 -79.86 391.31 3.68 -76.18 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.26 Total: 23.02 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 6.73 Total: 3.09 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -6.05 Total: -128.92 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.07 Total: -21.46 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -79.86 3.68 -76.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269747575.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.944 kcal (2) G-P(sol) polarization free energy of solvation -79.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds