Wall clock time and date at job start Tue Mar 31 2020 21:16:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09007 * 109.47062 * 2 1
4 4 F 1.39907 * 109.47276 * 119.99858 * 2 1 3
5 5 C 1.50705 * 109.47497 * 239.99745 * 2 1 3
6 6 O 1.21273 * 119.99729 * 316.63392 * 5 2 1
7 7 N 1.34770 * 119.99860 * 136.62785 * 5 2 1
8 8 C 1.46846 * 120.38142 * 175.54662 * 7 5 2
9 9 C 1.53350 * 108.81428 * 236.88119 * 8 7 5
10 10 C 1.53182 * 108.77099 * 308.68666 * 9 8 7
11 11 C 1.52842 * 117.66071 * 269.97244 * 10 9 8
12 12 C 1.52813 * 117.71352 * 201.11266 * 10 9 8
13 13 H 1.09002 * 117.50190 * 215.12688 * 12 10 9
14 14 C 1.50703 * 117.50416 * 0.14067 * 12 10 9
15 15 O 1.21278 * 119.99953 * 95.04020 * 14 12 10
16 16 N 1.34777 * 119.99852 * 275.04422 * 14 12 10
17 17 C 1.47067 * 136.05854 * 359.63135 * 16 14 12
18 18 C 1.53240 * 88.07922 * 207.20283 * 17 16 14
19 19 C 1.50707 * 114.32151 * 220.46747 * 18 17 16
20 20 H 1.08003 * 119.99487 * 93.76219 * 19 18 17
21 21 C 1.37874 * 120.00027 * 273.75953 * 19 18 17
22 22 N 1.31520 * 120.00095 * 359.97438 * 21 19 18
23 23 Si 1.86795 * 119.99989 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47214 * 59.99833 * 23 21 19
25 25 H 1.48503 * 109.47419 * 179.97438 * 23 21 19
26 26 H 1.48500 * 109.47016 * 299.99921 * 23 21 19
27 27 C 1.47065 * 136.05518 * 179.97438 * 16 14 12
28 28 C 1.53188 * 115.07421 * 55.44408 * 10 9 8
29 29 C 1.46848 * 120.38481 * 355.52825 * 7 5 2
30 30 H 1.09007 * 109.47062 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47220 * 300.00284 * 1 2 3
32 32 H 1.08995 * 109.47074 * 60.00113 * 1 2 3
33 33 H 1.09006 * 109.57894 * 117.08608 * 8 7 5
34 34 H 1.09000 * 109.58230 * 356.68790 * 8 7 5
35 35 H 1.09001 * 109.58834 * 188.89486 * 9 8 7
36 36 H 1.09006 * 109.58185 * 68.46950 * 9 8 7
37 37 H 1.09003 * 117.50175 * 359.76186 * 11 10 9
38 38 H 1.08996 * 117.50795 * 144.81075 * 11 10 9
39 39 H 1.09004 * 113.46369 * 321.93265 * 17 16 14
40 40 H 1.08998 * 113.46806 * 92.37171 * 17 16 14
41 41 H 1.08999 * 114.20141 * 87.73058 * 18 17 16
42 42 H 0.96999 * 119.99567 * 179.97438 * 22 21 19
43 43 H 1.09003 * 113.46784 * 267.62555 * 27 16 14
44 44 H 1.09004 * 113.46832 * 38.00697 * 27 16 14
45 45 H 1.09006 * 109.58606 * 64.34645 * 28 10 9
46 46 H 1.09001 * 109.58487 * 184.77007 * 28 10 9
47 47 H 1.08997 * 109.57800 * 242.91434 * 29 7 5
48 48 H 1.08989 * 109.57820 * 3.18958 * 29 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 9 1.9963 -0.6595 1.1423
5 6 2.0324 -0.7105 -1.2304
6 8 1.5147 -1.7481 -1.5853
7 7 3.0569 -0.1926 -1.9364
8 6 3.6171 -0.9255 -3.0789
9 6 5.1171 -1.1389 -2.8422
10 6 5.7577 0.2082 -2.4938
11 6 6.2943 1.0577 -3.6454
12 6 7.2655 0.3518 -2.6966
13 1 7.8126 0.9697 -1.9845
14 6 8.0131 -0.8436 -3.2287
15 8 8.2294 -0.9435 -4.4179
16 7 8.4412 -1.8018 -2.3831
17 6 8.3859 -2.0355 -0.9322
18 6 9.6716 -2.8582 -1.0677
19 6 9.6976 -4.1116 -0.2313
20 1 9.3824 -5.0523 -0.6583
21 6 10.1237 -4.0575 1.0788
22 7 10.5081 -2.9121 1.5985
23 14 10.1566 -5.6111 2.1152
24 1 11.0596 -6.6075 1.4851
25 1 10.6514 -5.2872 3.4774
26 1 8.7855 -6.1741 2.2069
27 6 9.1747 -3.0707 -2.5045
28 6 5.1259 0.9394 -1.3051
29 6 3.6257 1.1114 -1.5723
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 3.4699 -0.3476 -3.9914
34 1 3.1208 -1.8915 -3.1721
35 1 5.5764 -1.5391 -3.7461
36 1 5.2612 -1.8364 -2.0170
37 1 6.1961 0.6574 -4.6545
38 1 6.2024 2.1403 -3.5578
39 1 8.5130 -1.1284 -0.3412
40 1 7.5240 -2.6253 -0.6201
41 1 10.5873 -2.2717 -0.9933
42 1 10.8075 -2.8740 2.5203
43 1 8.5248 -3.9388 -2.6152
44 1 9.9705 -3.0426 -3.2488
45 1 5.2706 0.3538 -0.3971
46 1 5.5911 1.9183 -1.1891
47 1 3.4790 1.8154 -2.3914
48 1 3.1336 1.4869 -0.6752
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001272012251.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:16:45
Heat of formation + Delta-G solvation = -74.361143 kcal
Electronic energy + Delta-G solvation = -30336.401920 eV
Core-core repulsion = 26114.066294 eV
Total energy + Delta-G solvation = -4222.335626 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-48.94242 -41.77988 -41.00019 -39.70117 -38.42166 -36.43503 -34.66896 -33.54399
-32.10869 -31.31920 -30.71072 -27.41273 -26.75453 -26.34074 -24.84127 -24.44360
-23.87906 -21.86374 -21.16519 -19.83726 -19.49595 -18.93548 -18.61647 -17.96239
-17.67609 -17.04046 -16.78467 -16.70666 -16.51640 -16.21105 -15.78322 -15.65640
-15.62312 -14.92027 -14.84579 -14.44898 -14.26723 -14.11573 -14.02794 -13.92065
-13.46598 -13.32919 -13.21839 -13.18519 -13.12033 -12.98030 -12.76576 -12.74116
-12.63183 -12.31244 -12.21774 -12.12336 -11.74157 -11.47943 -11.20401 -11.09626
-11.03557 -10.79283 -10.66617 -10.52996 -9.77141 -9.59294 -8.19478 -6.30490
1.22047 1.46258 1.46688 1.52647 1.54636 1.75552 1.95272 2.43537
2.67572 3.10422 3.10872 3.34052 3.51220 3.53341 3.61164 3.72856
3.79592 3.90831 3.97892 4.01279 4.21325 4.24155 4.34560 4.34684
4.46395 4.51104 4.53119 4.64595 4.65860 4.67879 4.73430 4.76623
4.82369 4.84707 4.89085 4.90331 4.92112 4.99826 5.10334 5.13480
5.16454 5.27696 5.38040 5.55522 5.78350 6.16892 6.20186 6.77093
6.86072 6.89442 7.15835 7.39546 8.90278
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.009840 B = 0.003464 C = 0.002806
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2844.855332 B = 8081.642857 C = 9976.083875
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.071 3.929
3 H 0.151 0.849
4 F -0.208 7.208
5 C 0.484 3.516
6 O -0.571 6.571
7 N -0.598 5.598
8 C 0.123 3.877
9 C -0.096 4.096
10 C -0.092 4.092
11 C -0.114 4.114
12 C -0.191 4.191
13 H 0.139 0.861
14 C 0.557 3.443
15 O -0.599 6.599
16 N -0.638 5.638
17 C 0.124 3.876
18 C 0.025 3.975
19 C -0.533 4.533
20 H 0.063 0.937
21 C 0.025 3.975
22 N -0.915 5.915
23 Si 0.955 3.045
24 H -0.271 1.271
25 H -0.284 1.284
26 H -0.271 1.271
27 C 0.102 3.898
28 C -0.097 4.097
29 C 0.100 3.900
30 H 0.054 0.946
31 H 0.101 0.899
32 H 0.095 0.905
33 H 0.096 0.904
34 H 0.072 0.928
35 H 0.058 0.942
36 H 0.047 0.953
37 H 0.089 0.911
38 H 0.143 0.857
39 H 0.060 0.940
40 H 0.069 0.931
41 H 0.041 0.959
42 H 0.266 0.734
43 H 0.078 0.922
44 H 0.055 0.945
45 H 0.061 0.939
46 H 0.116 0.884
47 H 0.111 0.889
48 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.349 15.632 -3.301 24.330
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.032 3.968
3 H 0.168 0.832
4 F -0.189 7.189
5 C 0.271 3.729
6 O -0.450 6.450
7 N -0.330 5.330
8 C 0.001 3.999
9 C -0.134 4.134
10 C -0.093 4.093
11 C -0.151 4.151
12 C -0.211 4.211
13 H 0.157 0.843
14 C 0.349 3.651
15 O -0.482 6.482
16 N -0.371 5.371
17 C 0.001 3.999
18 C 0.006 3.994
19 C -0.571 4.571
20 H 0.081 0.919
21 C -0.176 4.176
22 N -0.553 5.553
23 Si 0.781 3.219
24 H -0.196 1.196
25 H -0.209 1.209
26 H -0.196 1.196
27 C -0.020 4.020
28 C -0.135 4.135
29 C -0.021 4.021
30 H 0.073 0.927
31 H 0.120 0.880
32 H 0.113 0.887
33 H 0.114 0.886
34 H 0.090 0.910
35 H 0.076 0.924
36 H 0.065 0.935
37 H 0.107 0.893
38 H 0.161 0.839
39 H 0.079 0.921
40 H 0.088 0.912
41 H 0.059 0.941
42 H 0.075 0.925
43 H 0.096 0.904
44 H 0.074 0.926
45 H 0.080 0.920
46 H 0.134 0.866
47 H 0.129 0.871
48 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -18.494 15.273 -4.059 24.326
hybrid contribution 0.831 -1.543 0.597 1.852
sum -17.663 13.729 -3.463 22.638
Atomic orbital electron populations
1.22277 0.90507 1.04056 1.05784 1.22064 0.98094 0.97929 0.78689
0.83248 1.92885 1.90523 1.84023 1.51496 1.21651 0.80167 0.85380
0.85743 1.90700 1.58444 1.25556 1.70322 1.48265 1.32405 1.21740
1.30620 1.21477 0.91625 0.97881 0.88952 1.21433 0.95648 0.95596
1.00760 1.21501 0.90947 0.97133 0.99729 1.23217 0.97135 1.00363
0.94354 1.22276 0.93365 0.98377 1.07128 0.84334 1.19912 0.77644
0.83179 0.84343 1.90607 1.60345 1.80023 1.17198 1.49942 1.55295
1.21098 1.10729 1.23131 1.00044 0.98638 0.78053 1.20167 0.93334
0.95564 0.90374 1.21170 1.44842 0.94352 0.96695 0.91903 1.25708
0.93947 0.98906 0.99017 1.70036 1.43778 1.26441 1.15058 0.85654
0.78706 0.79893 0.77692 1.19617 1.20898 1.19619 1.23214 0.94102
0.85396 0.99301 1.21651 0.95256 1.01674 0.94879 1.22293 0.92784
0.82930 1.04058 0.92686 0.88039 0.88653 0.88577 0.90966 0.92376
0.93465 0.89273 0.83918 0.92112 0.91248 0.94107 0.92541 0.90408
0.92599 0.92027 0.86613 0.87113 0.86385
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.10 9.41 71.98 0.68 -1.42 16
2 C 0.07 1.09 4.04 29.85 0.12 1.21 16
3 H 0.15 0.90 5.30 -2.38 -0.01 0.89 16
4 F -0.21 -4.77 17.07 44.97 0.77 -4.00 16
5 C 0.48 10.93 7.04 87.66 0.62 11.55 16
6 O -0.57 -18.27 15.86 -3.01 -0.05 -18.32 16
7 N -0.60 -10.98 2.92 -818.72 -2.39 -13.38 16
8 C 0.12 2.67 6.43 86.43 0.56 3.23 16
9 C -0.10 -2.49 5.23 30.77 0.16 -2.33 16
10 C -0.09 -1.93 1.94 -52.17 -0.10 -2.03 16
11 C -0.11 -2.18 9.45 30.55 0.29 -1.89 16
12 C -0.19 -5.13 5.73 -11.59 -0.07 -5.20 16
13 H 0.14 3.36 8.14 -2.39 -0.02 3.34 16
14 C 0.56 21.25 6.35 87.66 0.56 21.81 16
15 O -0.60 -26.57 17.36 -3.02 -0.05 -26.62 16
16 N -0.64 -26.06 3.69 -858.79 -3.17 -29.23 16
17 C 0.12 5.27 7.98 83.09 0.66 5.93 16
18 C 0.02 1.19 3.77 -11.28 -0.04 1.15 16
19 C -0.53 -27.60 8.82 25.60 0.23 -27.37 16
20 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16
21 C 0.02 1.30 5.46 84.65 0.46 1.77 16
22 N -0.92 -50.16 13.26 21.45 0.28 -49.87 16
23 Si 0.96 41.52 29.54 68.60 2.03 43.55 16
24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16
25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16
26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
27 C 0.10 4.41 8.19 83.19 0.68 5.09 16
28 C -0.10 -1.35 5.83 30.77 0.18 -1.17 16
29 C 0.10 0.96 6.34 86.43 0.55 1.50 16
30 H 0.05 0.99 7.89 -2.38 -0.02 0.97 16
31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16
32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16
33 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16
34 H 0.07 1.92 6.98 -2.39 -0.02 1.90 16
35 H 0.06 1.75 7.36 -2.39 -0.02 1.74 16
36 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16
37 H 0.09 2.04 7.91 -2.39 -0.02 2.02 16
38 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16
39 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16
40 H 0.07 2.98 8.10 -2.39 -0.02 2.96 16
41 H 0.04 2.17 8.11 -2.39 -0.02 2.15 16
42 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16
43 H 0.08 3.24 8.10 -2.39 -0.02 3.22 16
44 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16
45 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16
46 H 0.12 0.96 8.10 -2.39 -0.02 0.94 16
47 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16
48 H 0.12 0.47 5.07 -2.39 -0.01 0.46 16
Total: -1.00 -73.47 393.51 3.90 -69.57
By element:
Atomic # 1 Polarization: 15.53 SS G_CDS: 0.96 Total: 16.49 kcal
Atomic # 6 Polarization: 6.29 SS G_CDS: 5.53 Total: 11.82 kcal
Atomic # 7 Polarization: -87.20 SS G_CDS: -5.28 Total: -92.48 kcal
Atomic # 8 Polarization: -44.84 SS G_CDS: -0.10 Total: -44.94 kcal
Atomic # 9 Polarization: -4.77 SS G_CDS: 0.77 Total: -4.00 kcal
Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal
Total: -73.47 3.90 -69.57 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001272012251.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.796 kcal
(2) G-P(sol) polarization free energy of solvation -73.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.264 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.903 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.361 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds