Wall clock time and date at job start Tue Mar 31 2020 20:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35958 * 117.00067 * 2 1 4 4 C 1.38662 * 120.06364 * 0.02871 * 3 2 1 5 5 C 1.38181 * 119.97166 * 179.70328 * 4 3 2 6 6 C 1.38260 * 120.09068 * 0.54117 * 5 4 3 7 7 C 1.50700 * 119.93305 * 179.72829 * 6 5 4 8 8 C 1.53004 * 109.47208 * 269.72665 * 7 6 5 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 H 1.09007 * 109.47747 * 35.00142 * 12 11 9 14 14 C 1.53001 * 109.47313 * 274.99614 * 12 11 9 15 15 C 1.53006 * 109.47036 * 154.99621 * 12 11 9 16 16 C 1.52992 * 109.47159 * 294.99799 * 15 12 11 17 17 N 1.46506 * 109.47390 * 179.97438 * 16 15 12 18 18 C 1.36930 * 120.00358 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99903 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00165 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00294 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 120.00296 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46869 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46997 * 119.99516 * 22 20 18 25 25 H 1.48498 * 109.46836 * 240.00082 * 22 20 18 26 26 C 1.38250 * 120.12838 * 359.45319 * 6 5 4 27 27 C 1.38336 * 120.03025 * 0.27444 * 26 6 5 28 28 F 1.35101 * 120.04771 * 179.97438 * 27 26 6 29 29 H 1.09003 * 109.47170 * 60.00058 * 1 2 3 30 30 H 1.09005 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47190 * 299.99922 * 1 2 3 32 32 H 1.08008 * 120.01315 * 359.97064 * 4 3 2 33 33 H 1.08000 * 119.95201 * 180.29405 * 5 4 3 34 34 H 1.09000 * 109.47500 * 149.72669 * 7 6 5 35 35 H 1.08998 * 109.47585 * 29.72664 * 7 6 5 36 36 H 1.09009 * 109.46730 * 59.99906 * 8 7 6 37 37 H 1.08998 * 109.46846 * 300.00451 * 8 7 6 38 38 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 39 39 H 1.09003 * 109.47371 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46839 * 300.00218 * 14 12 11 41 41 H 1.08998 * 109.46617 * 60.00312 * 14 12 11 42 42 H 1.09002 * 109.46733 * 54.99689 * 15 12 11 43 43 H 1.09003 * 109.47212 * 174.99514 * 15 12 11 44 44 H 1.08994 * 109.47570 * 300.00116 * 16 15 12 45 45 H 1.09008 * 109.47295 * 60.00253 * 16 15 12 46 46 H 0.97004 * 119.99536 * 0.02562 * 17 16 15 47 47 H 0.97001 * 120.00389 * 179.97438 * 21 20 18 48 48 H 1.08003 * 119.98479 * 180.25023 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0006 5 6 1.9216 3.6053 0.0068 6 6 3.3023 3.6777 0.0011 7 6 3.9849 5.0212 0.0017 8 6 4.2159 5.4766 -1.4406 9 6 4.8991 6.8198 -1.4400 10 8 5.1737 7.3600 -0.3894 11 7 5.1993 7.4236 -2.6070 12 6 5.8580 8.7322 -2.6063 13 1 6.5499 8.7904 -1.7660 14 6 4.8041 9.8337 -2.4764 15 6 6.6289 8.9157 -3.9152 16 6 7.7633 7.8916 -3.9869 17 7 8.5011 8.0669 -5.2404 18 6 9.5670 7.2565 -5.5266 19 1 9.8636 6.4876 -4.8285 20 6 10.2663 7.4229 -6.7140 21 7 9.9046 8.3595 -7.5651 22 14 11.7201 6.3168 -7.1049 23 1 11.9202 5.3515 -5.9943 24 1 11.4536 5.5754 -8.3637 25 1 12.9423 7.1445 -7.2670 26 6 4.0579 2.5199 0.0006 27 6 3.4333 1.2856 0.0001 28 9 4.1713 0.1540 -0.0009 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2136 2.3201 0.0006 33 1 1.3341 4.5115 0.0121 34 1 4.9429 4.9419 0.5155 35 1 3.3561 5.7481 0.5158 36 1 3.2578 5.5560 -1.9544 37 1 4.8447 4.7497 -1.9548 38 1 4.9794 6.9917 -3.4472 39 1 5.2942 10.8073 -2.4764 40 1 4.1123 9.7755 -3.3168 41 1 4.2550 9.7029 -1.5440 42 1 5.9535 8.7694 -4.7582 43 1 7.0452 9.9224 -3.9536 44 1 8.4386 8.0378 -3.1439 45 1 7.3470 6.8849 -3.9486 46 1 8.2344 8.7572 -5.8676 47 1 10.3936 8.4761 -8.3947 48 1 5.1363 2.5791 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272905696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:13 Heat of formation + Delta-G solvation = -102.472872 kcal Electronic energy + Delta-G solvation = -27993.642868 eV Core-core repulsion = 23770.088225 eV Total energy + Delta-G solvation = -4223.554642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.03814 -40.50760 -39.83766 -38.22586 -36.57954 -34.36355 -33.76055 -31.95748 -31.12881 -30.77923 -29.52354 -27.88887 -27.74336 -24.90785 -23.91901 -23.17081 -21.94476 -21.40808 -20.65298 -20.28964 -18.71655 -17.49919 -17.32962 -17.11625 -16.68202 -16.52770 -16.09581 -15.55061 -15.38117 -15.21205 -14.76347 -14.63427 -14.52914 -14.10517 -13.89118 -13.65341 -13.44526 -13.31898 -13.00922 -12.87814 -12.85342 -12.59465 -12.34543 -12.28357 -11.89034 -11.79707 -11.52915 -11.33693 -11.23392 -11.19885 -11.03479 -10.80358 -10.64486 -10.56420 -10.02170 -9.80155 -9.70959 -9.31564 -9.00048 -8.86779 -8.48548 -6.93461 -5.77897 -3.06647 0.73975 0.81881 2.67974 2.70467 3.07046 3.30201 3.42873 3.48823 3.50928 3.85457 4.25604 4.32076 4.51229 4.56782 4.66309 4.70976 4.76376 4.83377 4.91060 4.91949 4.99664 5.05652 5.13457 5.25291 5.35196 5.40004 5.50069 5.53715 5.54415 5.67763 5.71337 5.75496 5.77095 5.89665 5.93283 6.03250 6.17271 6.23086 6.25071 6.27326 6.33069 6.56648 6.80335 6.84463 6.86022 7.57264 7.69785 8.27494 8.41127 9.52316 10.09983 10.44543 11.45029 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.002044 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.850782 B =13694.405475 C =15702.246128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.089 3.911 4 C -0.180 4.180 5 C -0.085 4.085 6 C -0.088 4.088 7 C -0.061 4.061 8 C -0.138 4.138 9 C 0.513 3.487 10 O -0.546 6.546 11 N -0.720 5.720 12 C 0.144 3.856 13 H 0.088 0.912 14 C -0.160 4.160 15 C -0.135 4.135 16 C 0.154 3.846 17 N -0.734 5.734 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.111 4.111 27 C 0.072 3.928 28 F -0.132 7.132 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.793 -10.125 16.384 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.043 3.957 4 C -0.199 4.199 5 C -0.103 4.103 6 C -0.088 4.088 7 C -0.098 4.098 8 C -0.178 4.178 9 C 0.300 3.700 10 O -0.424 6.424 11 N -0.371 5.371 12 C 0.039 3.961 13 H 0.106 0.894 14 C -0.218 4.218 15 C -0.173 4.173 16 C 0.027 3.973 17 N -0.378 5.378 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.130 4.130 27 C 0.052 3.948 28 F -0.111 7.111 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.155 0.845 33 H 0.151 0.849 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.236 0.764 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.349 -10.101 17.152 30.683 hybrid contribution 0.502 -0.695 -1.052 1.357 sum -22.847 -10.795 16.100 29.963 Atomic orbital electron populations 1.23120 0.77892 1.04325 1.01510 1.86142 1.21747 1.25844 1.88753 1.19025 0.90851 0.85681 1.00185 1.21131 1.00268 0.91435 1.07017 1.20945 0.93932 0.97315 0.98155 1.19688 0.93309 0.94850 1.00948 1.20291 1.01740 0.92057 0.95761 1.21688 1.02213 0.95034 0.98885 1.20596 0.78688 0.86920 0.83831 1.90692 1.53974 1.66487 1.31271 1.46163 1.61196 1.21123 1.08618 1.20971 0.93881 0.81710 0.99501 0.89413 1.22155 0.99303 0.98592 1.01800 1.22065 0.98073 1.01519 0.95660 1.20631 0.91365 0.95271 0.90079 1.42378 1.35175 1.41429 1.18856 1.19277 1.05203 1.10638 1.01854 0.91178 1.24751 0.99936 0.99218 0.97209 1.69668 1.42597 1.34914 1.11083 0.86116 0.82449 0.79804 0.77839 1.20537 1.21838 1.21840 1.20999 1.01332 0.89668 1.00972 1.16976 0.85933 0.83064 1.08795 1.91513 1.76378 1.48968 1.94219 0.92368 0.87936 0.92429 0.84486 0.84876 0.89745 0.89818 0.88780 0.88483 0.76363 0.91593 0.92589 0.92463 0.91401 0.90309 0.96452 0.96382 0.78334 0.93571 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.92 10.36 -19.61 -0.20 -3.12 16 3 C 0.09 0.84 6.69 -39.18 -0.26 0.58 16 4 C -0.18 -1.28 9.04 -39.45 -0.36 -1.64 16 5 C -0.09 -0.60 9.69 -39.59 -0.38 -0.98 16 6 C -0.09 -0.71 5.13 -104.61 -0.54 -1.25 16 7 C -0.06 -0.51 4.63 -27.88 -0.13 -0.64 16 8 C -0.14 -1.16 5.68 -27.88 -0.16 -1.32 16 9 C 0.51 6.13 7.79 -10.98 -0.09 6.05 16 10 O -0.55 -8.43 15.65 5.55 0.09 -8.34 16 11 N -0.72 -8.35 4.53 -53.80 -0.24 -8.60 16 12 C 0.14 1.88 2.57 -67.93 -0.17 1.70 16 13 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 14 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 15 C -0.13 -2.03 4.87 -26.73 -0.13 -2.16 16 16 C 0.15 3.04 6.15 -4.04 -0.02 3.02 16 17 N -0.73 -18.54 5.60 -59.91 -0.34 -18.88 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 21 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 C -0.11 -1.01 9.67 -39.54 -0.38 -1.40 16 27 C 0.07 0.76 7.31 -39.30 -0.29 0.48 16 28 F -0.13 -1.62 17.11 2.25 0.04 -1.58 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 32 H 0.14 0.63 6.30 -52.48 -0.33 0.30 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 35 H 0.08 0.70 8.04 -51.93 -0.42 0.29 16 36 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.36 7.75 -51.92 -0.40 -0.05 16 46 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -34.64 406.05 -8.27 -42.91 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.62 Total: 6.81 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.81 Total: -5.32 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.15 Total: -55.01 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.12 Total: -11.46 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.64 -8.27 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272905696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.562 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds