Wall clock time and date at job start Tue Mar 31 2020 20:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35958 * 117.00067 * 2 1 4 4 C 1.38662 * 120.06364 * 0.02871 * 3 2 1 5 5 C 1.38181 * 119.97166 * 179.70328 * 4 3 2 6 6 C 1.38260 * 120.09068 * 0.54117 * 5 4 3 7 7 C 1.50700 * 119.93305 * 179.72829 * 6 5 4 8 8 C 1.53004 * 109.47208 * 269.72665 * 7 6 5 9 9 C 1.50700 * 109.47208 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.27843 * 9 8 7 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 H 1.09007 * 109.47747 * 35.00142 * 12 11 9 14 14 C 1.53001 * 109.47313 * 274.99614 * 12 11 9 15 15 C 1.53006 * 109.47036 * 154.99621 * 12 11 9 16 16 C 1.52992 * 109.47159 * 294.99799 * 15 12 11 17 17 N 1.46506 * 109.47390 * 179.97438 * 16 15 12 18 18 C 1.36930 * 120.00358 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99903 * 0.02562 * 18 17 16 20 20 C 1.38806 * 120.00165 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00294 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 120.00296 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46869 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46997 * 119.99516 * 22 20 18 25 25 H 1.48498 * 109.46836 * 240.00082 * 22 20 18 26 26 C 1.38250 * 120.12838 * 359.45319 * 6 5 4 27 27 C 1.38336 * 120.03025 * 0.27444 * 26 6 5 28 28 F 1.35101 * 120.04771 * 179.97438 * 27 26 6 29 29 H 1.09003 * 109.47170 * 60.00058 * 1 2 3 30 30 H 1.09005 * 109.46976 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47190 * 299.99922 * 1 2 3 32 32 H 1.08008 * 120.01315 * 359.97064 * 4 3 2 33 33 H 1.08000 * 119.95201 * 180.29405 * 5 4 3 34 34 H 1.09000 * 109.47500 * 149.72669 * 7 6 5 35 35 H 1.08998 * 109.47585 * 29.72664 * 7 6 5 36 36 H 1.09009 * 109.46730 * 59.99906 * 8 7 6 37 37 H 1.08998 * 109.46846 * 300.00451 * 8 7 6 38 38 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 39 39 H 1.09003 * 109.47371 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46839 * 300.00218 * 14 12 11 41 41 H 1.08998 * 109.46617 * 60.00312 * 14 12 11 42 42 H 1.09002 * 109.46733 * 54.99689 * 15 12 11 43 43 H 1.09003 * 109.47212 * 174.99514 * 15 12 11 44 44 H 1.08994 * 109.47570 * 300.00116 * 16 15 12 45 45 H 1.09008 * 109.47295 * 60.00253 * 16 15 12 46 46 H 0.97004 * 119.99536 * 0.02562 * 17 16 15 47 47 H 0.97001 * 120.00389 * 179.97438 * 21 20 18 48 48 H 1.08003 * 119.98479 * 180.25023 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0006 5 6 1.9216 3.6053 0.0068 6 6 3.3023 3.6777 0.0011 7 6 3.9849 5.0212 0.0017 8 6 4.2159 5.4766 -1.4406 9 6 4.8991 6.8198 -1.4400 10 8 5.1737 7.3600 -0.3894 11 7 5.1993 7.4236 -2.6070 12 6 5.8580 8.7322 -2.6063 13 1 6.5499 8.7904 -1.7660 14 6 4.8041 9.8337 -2.4764 15 6 6.6289 8.9157 -3.9152 16 6 7.7633 7.8916 -3.9869 17 7 8.5011 8.0669 -5.2404 18 6 9.5670 7.2565 -5.5266 19 1 9.8636 6.4876 -4.8285 20 6 10.2663 7.4229 -6.7140 21 7 9.9046 8.3595 -7.5651 22 14 11.7201 6.3168 -7.1049 23 1 11.9202 5.3515 -5.9943 24 1 11.4536 5.5754 -8.3637 25 1 12.9423 7.1445 -7.2670 26 6 4.0579 2.5199 0.0006 27 6 3.4333 1.2856 0.0001 28 9 4.1713 0.1540 -0.0009 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2136 2.3201 0.0006 33 1 1.3341 4.5115 0.0121 34 1 4.9429 4.9419 0.5155 35 1 3.3561 5.7481 0.5158 36 1 3.2578 5.5560 -1.9544 37 1 4.8447 4.7497 -1.9548 38 1 4.9794 6.9917 -3.4472 39 1 5.2942 10.8073 -2.4764 40 1 4.1123 9.7755 -3.3168 41 1 4.2550 9.7029 -1.5440 42 1 5.9535 8.7694 -4.7582 43 1 7.0452 9.9224 -3.9536 44 1 8.4386 8.0378 -3.1439 45 1 7.3470 6.8849 -3.9486 46 1 8.2344 8.7572 -5.8676 47 1 10.3936 8.4761 -8.3947 48 1 5.1363 2.5791 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272905696.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:12 Heat of formation + Delta-G solvation = -124.622643 kcal Electronic energy + Delta-G solvation = -27994.603354 eV Core-core repulsion = 23770.088225 eV Total energy + Delta-G solvation = -4224.515129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.85307 -41.16047 -40.75552 -38.86225 -37.83995 -36.08736 -34.49020 -33.56290 -32.15850 -31.73229 -30.22774 -29.38509 -28.22071 -25.98029 -25.41915 -23.78399 -23.30035 -22.43623 -21.71685 -21.21817 -19.30678 -19.21497 -18.23303 -17.98338 -17.53676 -17.22787 -17.11803 -16.68254 -16.37881 -16.06000 -15.81280 -15.51878 -15.40087 -15.27696 -15.18179 -15.04509 -14.56684 -14.50149 -14.18291 -13.76788 -13.65216 -13.35085 -13.13020 -13.04314 -12.92812 -12.91089 -12.80374 -12.42307 -12.35896 -12.22479 -12.11988 -11.99286 -11.91833 -11.87001 -11.85521 -11.62345 -10.97216 -10.78411 -10.00065 -9.94697 -9.13025 -9.01452 -7.97344 -5.26100 0.11207 0.18806 1.46602 1.47097 1.57247 1.74862 2.20154 2.28347 2.54254 2.56278 3.20750 3.36383 3.59935 3.67368 3.74714 3.94262 4.07052 4.09241 4.19278 4.20482 4.30081 4.31354 4.37566 4.39154 4.43556 4.52498 4.58666 4.68488 4.72531 4.75167 4.78536 4.86976 4.90705 4.92341 5.03945 5.09920 5.17905 5.22491 5.25684 5.29086 5.36404 5.47915 5.54827 5.63786 5.67185 6.25646 6.29078 6.65753 7.32085 7.35397 8.07611 8.31326 9.26060 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.002044 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.850782 B =13694.405475 C =15702.246128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.079 3.921 4 C -0.174 4.174 5 C -0.076 4.076 6 C -0.089 4.089 7 C -0.054 4.054 8 C -0.130 4.130 9 C 0.511 3.489 10 O -0.585 6.585 11 N -0.716 5.716 12 C 0.151 3.849 13 H 0.066 0.934 14 C -0.151 4.151 15 C -0.119 4.119 16 C 0.153 3.847 17 N -0.746 5.746 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.293 1.293 26 C -0.117 4.117 27 C 0.036 3.964 28 F -0.151 7.151 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.412 0.588 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.005 0.995 45 H 0.025 0.975 46 H 0.375 0.625 47 H 0.252 0.748 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.920 -10.233 16.469 32.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.033 3.967 4 C -0.192 4.192 5 C -0.094 4.094 6 C -0.090 4.090 7 C -0.092 4.092 8 C -0.170 4.170 9 C 0.299 3.701 10 O -0.465 6.465 11 N -0.368 5.368 12 C 0.046 3.954 13 H 0.084 0.916 14 C -0.210 4.210 15 C -0.157 4.157 16 C 0.027 3.973 17 N -0.389 5.389 18 C -0.378 4.378 19 H 0.089 0.911 20 C -0.267 4.267 21 N -0.617 5.617 22 Si 0.801 3.199 23 H -0.193 1.193 24 H -0.217 1.217 25 H -0.220 1.220 26 C -0.136 4.136 27 C 0.017 3.983 28 F -0.130 7.130 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.184 0.816 33 H 0.179 0.821 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.248 0.752 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.023 0.977 45 H 0.043 0.957 46 H 0.208 0.792 47 H 0.061 0.939 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -25.504 -10.232 17.256 32.448 hybrid contribution 1.095 -0.664 -1.016 1.635 sum -24.408 -10.896 16.240 31.276 Atomic orbital electron populations 1.23433 0.75646 1.05818 1.02851 1.86109 1.24194 1.26217 1.88768 1.19243 0.90635 0.86644 1.00149 1.21451 1.01601 0.90484 1.05670 1.21284 0.93488 0.98367 0.96271 1.19668 0.93932 0.94004 1.01349 1.20194 1.01088 0.92259 0.95653 1.21700 1.03248 0.92732 0.99290 1.21187 0.78066 0.87739 0.83092 1.90679 1.55575 1.67682 1.32560 1.46143 1.60745 1.20706 1.09235 1.20777 0.94105 0.83306 0.97248 0.91609 1.22066 0.98779 0.97986 1.02145 1.21897 0.96702 0.99861 0.97236 1.20772 0.92113 0.97108 0.87297 1.42575 1.35137 1.40790 1.20358 1.19632 1.05797 1.10648 1.01760 0.91065 1.25554 1.02823 1.00934 0.97378 1.69805 1.43900 1.36610 1.11430 0.85099 0.78995 0.78121 0.77695 1.19340 1.21703 1.21983 1.21074 1.01594 0.89757 1.01132 1.17353 0.86832 0.82945 1.11200 1.91449 1.76949 1.49985 1.94649 0.91004 0.86591 0.90955 0.81574 0.82076 0.91352 0.89491 0.85953 0.87881 0.75204 0.90954 0.91110 0.92900 0.90286 0.90444 0.97684 0.95693 0.79247 0.93909 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -6.15 10.36 -93.07 -0.96 -7.11 16 3 C 0.08 1.45 6.69 22.53 0.15 1.60 16 4 C -0.17 -2.03 9.04 22.36 0.20 -1.83 16 5 C -0.08 -0.84 9.69 22.26 0.22 -0.62 16 6 C -0.09 -1.31 5.13 -19.86 -0.10 -1.41 16 7 C -0.05 -0.83 4.63 29.85 0.14 -0.70 16 8 C -0.13 -1.92 5.68 29.85 0.17 -1.75 16 9 C 0.51 11.51 7.79 87.66 0.68 12.20 16 10 O -0.58 -17.74 15.65 -3.04 -0.05 -17.78 16 11 N -0.72 -15.45 4.53 -442.52 -2.00 -17.45 16 12 C 0.15 3.76 2.57 44.99 0.12 3.87 16 13 H 0.07 1.96 7.58 -2.38 -0.02 1.94 16 14 C -0.15 -3.11 9.48 71.98 0.68 -2.43 16 15 C -0.12 -3.44 4.87 30.59 0.15 -3.29 16 16 C 0.15 5.99 6.15 86.38 0.53 6.52 16 17 N -0.75 -37.62 5.60 -343.46 -1.92 -39.55 16 18 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 19 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 20 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 21 N -0.97 -58.81 13.06 21.65 0.28 -58.53 16 22 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C -0.12 -2.14 9.67 22.30 0.22 -1.92 16 27 C 0.04 0.79 7.31 22.45 0.16 0.95 16 28 F -0.15 -3.94 17.11 44.97 0.77 -3.18 16 29 H 0.07 0.33 7.66 -2.39 -0.02 0.31 16 30 H 0.12 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 32 H 0.17 0.89 6.30 -2.91 -0.02 0.87 16 33 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.07 1.28 8.04 -2.39 -0.02 1.26 16 35 H 0.09 1.30 8.04 -2.39 -0.02 1.28 16 36 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.41 7.31 8.60 -92.71 -0.80 6.51 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.03 0.95 7.75 -2.38 -0.02 0.93 16 46 H 0.38 19.86 7.67 -92.71 -0.71 19.15 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -75.53 406.05 3.34 -72.19 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.53 Total: 27.50 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 5.73 Total: -4.44 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.65 Total: -115.53 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.01 Total: -24.90 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.77 Total: -3.18 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -75.53 3.34 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272905696.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.430 kcal (2) G-P(sol) polarization free energy of solvation -75.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds