Wall clock time and date at job start Tue Mar 31 2020 20:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47098 * 2 1 4 4 C 1.52995 * 109.46988 * 239.99133 * 2 1 3 5 5 C 1.53004 * 109.46711 * 175.00010 * 4 2 1 6 6 N 1.46504 * 109.47056 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99749 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00622 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99750 * 180.02562 * 7 6 5 10 10 N 1.31623 * 120.00272 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00080 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47070 * 60.00081 * 11 9 7 13 13 H 1.48501 * 109.47050 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46850 * 300.00061 * 11 9 7 15 15 N 1.46504 * 109.46943 * 119.99387 * 2 1 3 16 16 C 1.34773 * 119.99831 * 275.00534 * 15 2 1 17 17 O 1.21284 * 120.00356 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99972 * 179.97438 * 16 15 2 19 19 H 1.09007 * 109.46825 * 59.99635 * 18 16 15 20 20 C 1.52993 * 109.47344 * 299.99926 * 18 16 15 21 21 O 1.42898 * 109.47428 * 179.97438 * 18 16 15 22 22 C 1.42901 * 114.00480 * 210.00194 * 21 18 16 23 23 C 1.50697 * 109.47191 * 180.02562 * 22 21 18 24 24 C 1.38241 * 119.97433 * 89.99768 * 23 22 21 25 25 C 1.38205 * 120.02377 * 179.74187 * 24 23 22 26 26 C 1.38455 * 119.97496 * 0.26259 * 25 24 23 27 27 F 1.35097 * 120.02414 * 180.02562 * 26 25 24 28 28 C 1.38464 * 119.95049 * 359.97438 * 26 25 24 29 29 C 1.38201 * 119.97214 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.47448 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47589 * 300.00888 * 1 2 3 32 32 H 1.08999 * 109.47164 * 60.00667 * 1 2 3 33 33 H 1.09001 * 109.47336 * 295.00028 * 4 2 1 34 34 H 1.08997 * 109.47263 * 55.00796 * 4 2 1 35 35 H 1.08998 * 109.47678 * 300.00344 * 5 4 2 36 36 H 1.09005 * 109.46847 * 60.00511 * 5 4 2 37 37 H 0.96992 * 119.99818 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00273 * 179.97438 * 10 9 7 39 39 H 0.96997 * 120.00073 * 94.99159 * 15 2 1 40 40 H 1.09004 * 109.47054 * 59.99742 * 20 18 16 41 41 H 1.09001 * 109.47421 * 179.97438 * 20 18 16 42 42 H 1.09001 * 109.46920 * 300.00102 * 20 18 16 43 43 H 1.09002 * 109.46929 * 60.00194 * 22 21 18 44 44 H 1.08994 * 109.46774 * 300.00537 * 22 21 18 45 45 H 1.08002 * 119.99029 * 0.02809 * 24 23 22 46 46 H 1.08004 * 120.00758 * 180.27782 * 25 24 23 47 47 H 1.07993 * 120.01407 * 180.02562 * 28 26 25 48 48 H 1.07996 * 119.98812 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 7 4.0533 -1.3047 -2.5093 7 6 5.3954 -1.3416 -2.7785 8 1 6.0939 -0.8615 -2.1092 9 6 5.8581 -1.9962 -3.9118 10 7 5.0070 -2.5818 -4.7272 11 14 7.6891 -2.0472 -4.2788 12 1 8.3994 -2.7191 -3.1612 13 1 7.9208 -2.8004 -5.5374 14 1 8.2023 -0.6619 -4.4298 15 7 2.0183 -0.6905 1.1963 16 6 2.1469 -0.0180 2.3572 17 8 1.8588 1.1588 2.4114 18 6 2.6486 -0.7285 3.5879 19 1 3.6478 -1.1210 3.3988 20 6 1.7042 -1.8819 3.9317 21 8 2.6973 0.1900 4.6816 22 6 3.7159 -0.1014 5.6406 23 6 3.6754 0.9245 6.7437 24 6 2.8871 0.7090 7.8587 25 6 2.8534 1.6466 8.8734 26 6 3.6054 2.8046 8.7706 27 9 3.5736 3.7216 9.7622 28 6 4.3908 3.0216 7.6511 29 6 4.4230 2.0826 6.6376 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8900 33 1 1.7516 -1.7717 -1.2053 34 1 1.6055 -0.2620 -2.1369 35 1 3.8533 0.4368 -1.3572 36 1 3.9994 -1.0729 -0.4257 37 1 3.4260 -1.7363 -3.1101 38 1 5.3303 -3.0389 -5.5193 39 1 2.2489 -1.6317 1.1529 40 1 1.6675 -2.5825 3.0973 41 1 2.0673 -2.3961 4.8216 42 1 0.7050 -1.4894 4.1207 43 1 4.6911 -0.0744 5.1543 44 1 3.5466 -1.0929 6.0604 45 1 2.3008 -0.1945 7.9389 46 1 2.2408 1.4760 9.7464 47 1 4.9781 3.9243 7.5700 48 1 5.0358 2.2514 5.7646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273149763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:54 Heat of formation + Delta-G solvation = -101.217939 kcal Electronic energy + Delta-G solvation = -28215.818776 eV Core-core repulsion = 23992.318551 eV Total energy + Delta-G solvation = -4223.500224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.24497 -40.21017 -39.53175 -37.85107 -36.35351 -34.37503 -32.98308 -31.88329 -31.53621 -31.06682 -30.01747 -27.88909 -26.37163 -24.64382 -23.87433 -23.45227 -21.88227 -21.73555 -20.87615 -20.33222 -18.09446 -17.62688 -17.35727 -16.96703 -16.79742 -16.15488 -15.93554 -15.73567 -15.50438 -14.93173 -14.65608 -14.52988 -14.03589 -13.93928 -13.83866 -13.67409 -13.38860 -13.34611 -13.33726 -12.88510 -12.77423 -12.66691 -12.53278 -12.29599 -11.94408 -11.83187 -11.44306 -11.38891 -11.21640 -11.04197 -10.80311 -10.66255 -10.59106 -10.19347 -10.09432 -9.72542 -9.53876 -9.48633 -9.03819 -9.01944 -8.87811 -6.95305 -5.79232 -3.08155 0.65660 0.85522 2.61898 2.72490 3.21692 3.41855 3.46388 3.47401 3.79446 3.88184 4.28270 4.38890 4.50448 4.54661 4.58361 4.63724 4.73756 4.81650 4.83210 4.96633 5.01614 5.16067 5.23758 5.26950 5.35136 5.39678 5.51265 5.52880 5.57841 5.70817 5.72418 5.74382 5.78368 5.83052 5.92199 6.02718 6.10630 6.21414 6.26830 6.31973 6.47690 6.52100 6.74612 6.78417 6.85248 7.54047 7.66780 8.25661 8.39750 9.50717 10.08429 10.43105 11.43493 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.001939 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.126845 B =14439.604067 C =15675.102511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.717 5.717 16 C 0.515 3.485 17 O -0.523 6.523 18 C 0.068 3.932 19 H 0.090 0.910 20 C -0.170 4.170 21 O -0.350 6.350 22 C 0.100 3.900 23 C -0.098 4.098 24 C -0.068 4.068 25 C -0.159 4.159 26 C 0.103 3.897 27 F -0.140 7.140 28 C -0.156 4.156 29 C -0.064 4.064 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.383 0.617 38 H 0.256 0.744 39 H 0.401 0.599 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 3.136 26.337 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.042 3.958 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.212 1.212 15 N -0.370 5.370 16 C 0.300 3.700 17 O -0.398 6.398 18 C 0.007 3.993 19 H 0.108 0.892 20 C -0.228 4.228 21 O -0.268 6.268 22 C 0.023 3.977 23 C -0.099 4.099 24 C -0.086 4.086 25 C -0.177 4.177 26 C 0.083 3.917 27 F -0.119 7.119 28 C -0.175 4.175 29 C -0.083 4.083 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.152 0.848 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.471 4.222 26.434 27.792 hybrid contribution 1.112 -0.706 -0.342 1.361 sum -6.360 3.516 26.092 27.085 Atomic orbital electron populations 1.22161 0.95413 1.02001 1.02353 1.20981 0.93581 0.97713 0.83527 0.89347 1.22066 0.98036 1.00797 0.96391 1.20634 0.90387 0.95625 0.90712 1.42358 1.05355 1.64924 1.25165 1.19178 0.83835 1.28590 1.05560 0.91316 1.24750 0.97731 1.00895 0.97658 1.69645 1.32876 1.40612 1.15093 0.86259 0.85084 0.77513 0.77278 1.21286 1.21656 1.21247 1.46059 1.67404 1.14192 1.09370 1.20260 0.78276 0.87401 0.84100 1.90718 1.48724 1.15651 1.84672 1.21940 1.00512 0.90068 0.86789 0.89215 1.22240 1.00602 0.97061 1.02898 1.88123 1.54194 1.51413 1.33083 1.21411 0.91778 0.96090 0.88394 1.19623 0.98674 0.96328 0.95248 1.20926 0.96489 0.98910 0.92285 1.21133 1.01574 0.93809 1.01219 1.17786 0.99165 0.88041 0.86672 1.91505 1.95281 1.65233 1.59874 1.21173 1.01215 1.01536 0.93593 1.21001 0.97639 0.91879 0.97732 0.92505 0.92400 0.91503 0.91331 0.90183 0.96425 0.96461 0.78310 0.93457 0.76435 0.90692 0.91282 0.91098 0.91789 0.91931 0.84798 0.84571 0.84463 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 2 C 0.15 1.93 2.57 -67.93 -0.17 1.76 16 3 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 4 C -0.13 -2.00 4.87 -26.73 -0.13 -2.13 16 5 C 0.15 3.00 6.15 -4.04 -0.02 2.97 16 6 N -0.73 -18.28 5.60 -59.90 -0.34 -18.62 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 11 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 N -0.72 -8.51 4.42 -53.81 -0.24 -8.74 16 16 C 0.52 6.85 7.20 -10.98 -0.08 6.77 16 17 O -0.52 -9.21 16.16 -14.36 -0.23 -9.45 16 18 C 0.07 0.68 3.14 -27.88 -0.09 0.59 16 19 H 0.09 0.73 7.79 -51.93 -0.40 0.32 16 20 C -0.17 -1.24 9.42 37.15 0.35 -0.89 16 21 O -0.35 -4.02 9.50 -55.14 -0.52 -4.54 16 22 C 0.10 0.81 5.87 36.00 0.21 1.03 16 23 C -0.10 -0.86 5.51 -104.62 -0.58 -1.44 16 24 C -0.07 -0.52 9.70 -39.59 -0.38 -0.91 16 25 C -0.16 -1.26 10.03 -39.51 -0.40 -1.65 16 26 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 27 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 28 C -0.16 -1.34 10.03 -39.51 -0.40 -1.74 16 29 C -0.06 -0.56 9.70 -39.59 -0.38 -0.95 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.02 0.33 7.75 -51.93 -0.40 -0.07 16 37 H 0.38 9.97 7.67 -40.82 -0.31 9.66 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.40 3.95 8.02 -40.82 -0.33 3.62 16 40 H 0.07 0.45 7.56 -51.93 -0.39 0.06 16 41 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.46 8.03 -51.93 -0.42 0.05 16 44 H 0.06 0.37 7.81 -51.93 -0.41 -0.03 16 45 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 408.80 15.07 6.16 6.16 Total: -1.00 -34.61 408.80 -9.34 -43.96 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.66 Total: 7.38 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.25 Total: -4.80 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.15 Total: -54.58 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.76 Total: -13.99 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.61 -9.34 -43.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273149763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.262 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds