Wall clock time and date at job start Tue Mar 31 2020 20:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47098 * 2 1 4 4 C 1.52995 * 109.46988 * 239.99133 * 2 1 3 5 5 C 1.53004 * 109.46711 * 175.00010 * 4 2 1 6 6 N 1.46504 * 109.47056 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99749 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00622 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99750 * 180.02562 * 7 6 5 10 10 N 1.31623 * 120.00272 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00080 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47070 * 60.00081 * 11 9 7 13 13 H 1.48501 * 109.47050 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46850 * 300.00061 * 11 9 7 15 15 N 1.46504 * 109.46943 * 119.99387 * 2 1 3 16 16 C 1.34773 * 119.99831 * 275.00534 * 15 2 1 17 17 O 1.21284 * 120.00356 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99972 * 179.97438 * 16 15 2 19 19 H 1.09007 * 109.46825 * 59.99635 * 18 16 15 20 20 C 1.52993 * 109.47344 * 299.99926 * 18 16 15 21 21 O 1.42898 * 109.47428 * 179.97438 * 18 16 15 22 22 C 1.42901 * 114.00480 * 210.00194 * 21 18 16 23 23 C 1.50697 * 109.47191 * 180.02562 * 22 21 18 24 24 C 1.38241 * 119.97433 * 89.99768 * 23 22 21 25 25 C 1.38205 * 120.02377 * 179.74187 * 24 23 22 26 26 C 1.38455 * 119.97496 * 0.26259 * 25 24 23 27 27 F 1.35097 * 120.02414 * 180.02562 * 26 25 24 28 28 C 1.38464 * 119.95049 * 359.97438 * 26 25 24 29 29 C 1.38201 * 119.97214 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.47448 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47589 * 300.00888 * 1 2 3 32 32 H 1.08999 * 109.47164 * 60.00667 * 1 2 3 33 33 H 1.09001 * 109.47336 * 295.00028 * 4 2 1 34 34 H 1.08997 * 109.47263 * 55.00796 * 4 2 1 35 35 H 1.08998 * 109.47678 * 300.00344 * 5 4 2 36 36 H 1.09005 * 109.46847 * 60.00511 * 5 4 2 37 37 H 0.96992 * 119.99818 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00273 * 179.97438 * 10 9 7 39 39 H 0.96997 * 120.00073 * 94.99159 * 15 2 1 40 40 H 1.09004 * 109.47054 * 59.99742 * 20 18 16 41 41 H 1.09001 * 109.47421 * 179.97438 * 20 18 16 42 42 H 1.09001 * 109.46920 * 300.00102 * 20 18 16 43 43 H 1.09002 * 109.46929 * 60.00194 * 22 21 18 44 44 H 1.08994 * 109.46774 * 300.00537 * 22 21 18 45 45 H 1.08002 * 119.99029 * 0.02809 * 24 23 22 46 46 H 1.08004 * 120.00758 * 180.27782 * 25 24 23 47 47 H 1.07993 * 120.01407 * 180.02562 * 28 26 25 48 48 H 1.07996 * 119.98812 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 7 4.0533 -1.3047 -2.5093 7 6 5.3954 -1.3416 -2.7785 8 1 6.0939 -0.8615 -2.1092 9 6 5.8581 -1.9962 -3.9118 10 7 5.0070 -2.5818 -4.7272 11 14 7.6891 -2.0472 -4.2788 12 1 8.3994 -2.7191 -3.1612 13 1 7.9208 -2.8004 -5.5374 14 1 8.2023 -0.6619 -4.4298 15 7 2.0183 -0.6905 1.1963 16 6 2.1469 -0.0180 2.3572 17 8 1.8588 1.1588 2.4114 18 6 2.6486 -0.7285 3.5879 19 1 3.6478 -1.1210 3.3988 20 6 1.7042 -1.8819 3.9317 21 8 2.6973 0.1900 4.6816 22 6 3.7159 -0.1014 5.6406 23 6 3.6754 0.9245 6.7437 24 6 2.8871 0.7090 7.8587 25 6 2.8534 1.6466 8.8734 26 6 3.6054 2.8046 8.7706 27 9 3.5736 3.7216 9.7622 28 6 4.3908 3.0216 7.6511 29 6 4.4230 2.0826 6.6376 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5137 -0.8900 33 1 1.7516 -1.7717 -1.2053 34 1 1.6055 -0.2620 -2.1369 35 1 3.8533 0.4368 -1.3572 36 1 3.9994 -1.0729 -0.4257 37 1 3.4260 -1.7363 -3.1101 38 1 5.3303 -3.0389 -5.5193 39 1 2.2489 -1.6317 1.1529 40 1 1.6675 -2.5825 3.0973 41 1 2.0673 -2.3961 4.8216 42 1 0.7050 -1.4894 4.1207 43 1 4.6911 -0.0744 5.1543 44 1 3.5466 -1.0929 6.0604 45 1 2.3008 -0.1945 7.9389 46 1 2.2408 1.4760 9.7464 47 1 4.9781 3.9243 7.5700 48 1 5.0358 2.2514 5.7646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273149763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:53 Heat of formation + Delta-G solvation = -122.281843 kcal Electronic energy + Delta-G solvation = -28216.732175 eV Core-core repulsion = 23992.318551 eV Total energy + Delta-G solvation = -4224.413624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.95510 -41.15580 -40.22501 -38.68017 -37.64047 -36.07250 -33.97142 -33.21894 -32.25035 -32.14042 -30.94415 -29.39705 -26.99877 -25.94370 -25.21364 -24.06291 -23.25493 -22.50625 -22.08090 -21.35759 -19.24359 -18.75497 -18.35405 -18.05944 -17.50387 -17.06661 -16.75222 -16.63808 -16.51761 -16.28650 -15.69298 -15.49589 -15.36304 -15.13936 -15.04062 -14.67806 -14.50658 -14.30968 -14.24792 -13.98817 -13.69295 -13.30681 -13.27010 -13.13187 -13.06513 -12.86566 -12.85478 -12.57576 -12.36680 -12.30136 -12.07791 -11.99286 -11.99065 -11.91652 -11.63311 -11.00207 -10.92806 -10.45305 -10.10012 -10.07748 -9.69726 -9.00096 -7.95333 -5.24258 0.00423 0.24457 1.47744 1.50445 1.56668 1.62245 1.89077 2.49897 2.55846 3.10039 3.24060 3.38027 3.59388 3.70716 3.72004 3.84630 3.94712 3.98901 4.06628 4.12630 4.18011 4.19785 4.26008 4.40481 4.46755 4.57619 4.58736 4.66771 4.75687 4.78597 4.84683 4.86906 4.93793 4.96697 5.01382 5.10993 5.20595 5.22844 5.24893 5.28585 5.34818 5.48790 5.49419 5.57224 5.86348 6.07339 6.26981 6.60044 7.27394 7.33674 8.09187 8.33106 9.27523 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.001939 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.126845 B =14439.604067 C =15675.102511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 H 0.064 0.936 4 C -0.118 4.118 5 C 0.153 3.847 6 N -0.745 5.745 7 C -0.248 4.248 8 H 0.072 0.928 9 C -0.074 4.074 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.275 1.275 13 H -0.294 1.294 14 H -0.281 1.281 15 N -0.708 5.708 16 C 0.510 3.490 17 O -0.574 6.574 18 C 0.071 3.929 19 H 0.111 0.889 20 C -0.164 4.164 21 O -0.380 6.380 22 C 0.096 3.904 23 C -0.110 4.110 24 C -0.069 4.069 25 C -0.160 4.160 26 C 0.083 3.917 27 F -0.148 7.148 28 C -0.165 4.165 29 C -0.078 4.078 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.004 0.996 36 H 0.027 0.973 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.413 0.587 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.147 0.853 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 1.591 27.441 28.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.083 0.917 4 C -0.156 4.156 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.380 4.380 8 H 0.090 0.910 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.201 1.201 13 H -0.220 1.220 14 H -0.208 1.208 15 N -0.362 5.362 16 C 0.296 3.704 17 O -0.453 6.453 18 C 0.010 3.990 19 H 0.129 0.871 20 C -0.221 4.221 21 O -0.299 6.299 22 C 0.021 3.979 23 C -0.111 4.111 24 C -0.087 4.087 25 C -0.178 4.178 26 C 0.064 3.936 27 F -0.127 7.127 28 C -0.183 4.183 29 C -0.097 4.097 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.022 0.978 36 H 0.045 0.955 37 H 0.208 0.792 38 H 0.061 0.939 39 H 0.251 0.749 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.176 0.824 46 H 0.173 0.827 47 H 0.164 0.836 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.406 2.663 27.572 28.673 hybrid contribution 1.081 -0.178 -0.647 1.272 sum -6.326 2.485 26.925 27.769 Atomic orbital electron populations 1.22076 0.93671 1.03100 1.02236 1.20796 0.94812 0.96300 0.83331 0.91743 1.21891 0.94595 1.01885 0.97217 1.20771 0.93489 0.94082 0.88959 1.42550 1.04449 1.65234 1.26569 1.19558 0.85308 1.27725 1.05435 0.91034 1.25558 1.01974 1.01267 0.97839 1.69793 1.34615 1.41773 1.15494 0.85234 0.80176 0.77499 0.76981 1.20132 1.22026 1.20758 1.45988 1.66754 1.14682 1.08730 1.20994 0.77253 0.86918 0.85196 1.90693 1.51103 1.17958 1.85520 1.22033 1.02036 0.89944 0.85018 0.87127 1.22232 0.99233 0.96140 1.04538 1.88084 1.55330 1.52602 1.33855 1.21594 0.91391 0.97157 0.87771 1.19871 0.98794 0.96499 0.95894 1.21222 0.96177 0.99618 0.91659 1.21405 1.01225 0.93251 1.01957 1.18045 1.00134 0.88623 0.86847 1.91480 1.95427 1.65625 1.60190 1.21340 1.01386 1.02022 0.93578 1.21179 0.98196 0.92277 0.98003 0.90743 0.93446 0.90722 0.89916 0.90292 0.97801 0.95506 0.79225 0.93937 0.74946 0.89195 0.89003 0.92323 0.91168 0.89183 0.82423 0.82718 0.83551 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.48 71.98 0.68 -2.60 16 2 C 0.15 3.89 2.57 44.99 0.12 4.00 16 3 H 0.06 1.98 7.58 -2.39 -0.02 1.97 16 4 C -0.12 -3.35 4.87 30.59 0.15 -3.20 16 5 C 0.15 5.86 6.15 86.38 0.53 6.39 16 6 N -0.75 -36.87 5.60 -343.43 -1.92 -38.79 16 7 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 11 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 N -0.71 -15.78 4.42 -442.54 -1.96 -17.74 16 16 C 0.51 13.15 7.20 87.66 0.63 13.78 16 17 O -0.57 -20.55 16.16 15.99 0.26 -20.29 16 18 C 0.07 1.26 3.14 29.85 0.09 1.36 16 19 H 0.11 1.49 7.79 -2.38 -0.02 1.47 16 20 C -0.16 -1.92 9.42 71.98 0.68 -1.24 16 21 O -0.38 -8.22 9.50 -129.94 -1.24 -9.46 16 22 C 0.10 1.39 5.87 71.23 0.42 1.81 16 23 C -0.11 -1.80 5.51 -19.86 -0.11 -1.91 16 24 C -0.07 -0.95 9.70 22.26 0.22 -0.73 16 25 C -0.16 -2.35 10.03 22.31 0.22 -2.13 16 26 C 0.08 1.49 7.30 22.38 0.16 1.66 16 27 F -0.15 -2.94 17.27 44.97 0.78 -2.16 16 28 C -0.16 -2.85 10.03 22.31 0.22 -2.63 16 29 C -0.08 -1.36 9.70 22.26 0.22 -1.14 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.28 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.03 0.99 7.75 -2.38 -0.02 0.97 16 37 H 0.38 19.52 7.67 -92.71 -0.71 18.81 16 38 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.41 7.12 8.02 -92.71 -0.74 6.38 16 40 H 0.09 0.77 7.56 -2.38 -0.02 0.76 16 41 H 0.09 0.68 7.87 -2.39 -0.02 0.66 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 0.89 8.03 -2.39 -0.02 0.87 16 44 H 0.09 0.77 7.81 -2.39 -0.02 0.75 16 45 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 46 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 47 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 48 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -75.18 408.80 3.28 -71.90 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.49 Total: 29.97 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.54 Total: -3.18 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -3.60 Total: -114.21 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.98 Total: -29.75 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -75.18 3.28 -71.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273149763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.380 kcal (2) G-P(sol) polarization free energy of solvation -75.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds