Wall clock time and date at job start Tue Mar 31 2020 21:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46997 * 2 1 4 4 C 1.46500 * 119.99974 * 265.10386 * 3 2 1 5 5 C 1.53001 * 109.47213 * 270.00004 * 4 3 2 6 6 N 1.46500 * 109.47213 * 180.02562 * 5 4 3 7 7 C 1.36936 * 120.00125 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99541 * 359.97438 * 7 6 5 9 9 C 1.38804 * 119.99926 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00389 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46991 * 59.99639 * 11 9 7 13 13 H 1.48495 * 109.47135 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46760 * 299.99657 * 11 9 7 15 15 C 1.34774 * 119.99889 * 85.10622 * 3 2 1 16 16 O 1.21277 * 120.00134 * 185.45283 * 15 3 2 17 17 C 1.50705 * 119.99895 * 5.44891 * 15 3 2 18 18 H 1.08998 * 109.47001 * 316.17320 * 17 15 3 19 19 C 1.52994 * 109.47125 * 76.17537 * 17 15 3 20 20 O 1.42902 * 109.46921 * 196.17386 * 17 15 3 21 21 C 1.42903 * 113.99968 * 149.99948 * 20 17 15 22 22 C 1.50694 * 109.47040 * 180.02562 * 21 20 17 23 23 C 1.38243 * 119.97577 * 90.00224 * 22 21 20 24 24 C 1.38198 * 120.03011 * 179.74313 * 23 22 21 25 25 C 1.38463 * 119.97149 * 0.25352 * 24 23 22 26 26 F 1.35096 * 120.02678 * 180.02562 * 25 24 23 27 27 C 1.38457 * 119.94746 * 0.02562 * 25 24 23 28 28 C 1.38202 * 119.97529 * 359.97438 * 27 25 24 29 29 H 1.09001 * 109.47351 * 59.99709 * 1 2 3 30 30 H 1.08994 * 109.47504 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47228 * 300.00256 * 1 2 3 32 32 H 1.09001 * 109.47004 * 240.00680 * 2 1 3 33 33 H 1.08999 * 109.47181 * 119.99779 * 2 1 3 34 34 H 1.08999 * 109.47190 * 30.00421 * 4 3 2 35 35 H 1.09001 * 109.46975 * 150.00262 * 4 3 2 36 36 H 1.08997 * 109.47050 * 300.00723 * 5 4 3 37 37 H 1.09001 * 109.46939 * 60.00237 * 5 4 3 38 38 H 0.96995 * 119.99663 * 0.02562 * 6 5 4 39 39 H 0.97004 * 120.00110 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.47230 * 175.15971 * 19 17 15 41 41 H 1.08997 * 109.47355 * 295.16555 * 19 17 15 42 42 H 1.09000 * 109.46867 * 55.16066 * 19 17 15 43 43 H 1.08994 * 109.46693 * 60.00323 * 21 20 17 44 44 H 1.08997 * 109.46911 * 300.00072 * 21 20 17 45 45 H 1.07999 * 119.98817 * 0.02562 * 23 22 21 46 46 H 1.07997 * 120.01824 * 180.27966 * 24 23 22 47 47 H 1.08000 * 120.01522 * 180.02562 * 27 25 24 48 48 H 1.08007 * 119.98641 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3646 2.0358 -1.2641 5 6 3.8401 1.7846 -1.5811 6 7 4.1865 2.4397 -2.8449 7 6 5.4623 2.3514 -3.3347 8 1 6.2131 1.7992 -2.7890 9 6 5.7905 2.9725 -4.5318 10 7 4.8756 3.6458 -5.1965 11 14 7.5311 2.8526 -5.1996 12 1 7.8762 1.4266 -5.4287 13 1 7.6214 3.5955 -6.4822 14 1 8.4790 3.4400 -4.2189 15 6 2.1490 2.0498 1.1629 16 8 2.4580 3.2226 1.1568 17 6 1.9113 1.3400 2.4709 18 1 1.0157 0.7237 2.3923 19 6 3.1143 0.4523 2.7955 20 8 1.7362 2.3041 3.5111 21 6 0.8820 1.8678 4.5704 22 6 0.7689 2.9571 5.6055 23 6 -0.2300 3.9072 5.5021 24 6 -0.3380 4.9035 6.4537 25 6 0.5580 4.9530 7.5082 26 9 0.4531 5.9262 8.4393 27 6 1.5615 4.0043 7.6076 28 6 1.6676 3.0089 6.6547 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.7466 1.6295 -2.0648 35 1 2.1889 3.1081 -1.1781 36 1 4.4580 2.1909 -0.7803 37 1 4.0158 0.7123 -1.6671 38 1 3.5122 2.9359 -3.3346 39 1 5.1050 4.0795 -6.0333 40 1 2.9811 0.0059 3.7809 41 1 3.1965 -0.3361 2.0475 42 1 4.0226 1.0550 2.7894 43 1 1.3008 0.9721 5.0291 44 1 -0.1067 1.6429 4.1705 45 1 -0.9290 3.8681 4.6798 46 1 -1.1212 5.6430 6.3751 47 1 2.2607 4.0416 8.4298 48 1 2.4501 2.2685 6.7323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273731889.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:26 Heat of formation + Delta-G solvation = -83.734866 kcal Electronic energy + Delta-G solvation = -28727.048570 eV Core-core repulsion = 24504.306469 eV Total energy + Delta-G solvation = -4222.742101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.22524 -40.32539 -39.53580 -37.73942 -36.12548 -34.65292 -32.70340 -31.75733 -31.52418 -30.82654 -30.31980 -27.61814 -26.35224 -24.68615 -23.72265 -23.44653 -22.79625 -21.86460 -21.44147 -19.16734 -18.08101 -17.64017 -17.11362 -16.99951 -16.78469 -16.04663 -15.91992 -15.75809 -15.38124 -15.16400 -14.52334 -14.46746 -14.12714 -13.94356 -13.82055 -13.75566 -13.50488 -13.21714 -13.21264 -12.99452 -12.87439 -12.62576 -12.55323 -12.34617 -12.14780 -11.77340 -11.48644 -11.38023 -11.26630 -11.12164 -10.96232 -10.86826 -10.64825 -10.15072 -10.12091 -9.74073 -9.47799 -9.42331 -9.01808 -8.85105 -8.53186 -6.91509 -5.74025 -3.03362 0.67005 0.86919 2.66467 2.70238 3.17507 3.46370 3.50464 3.51866 3.75112 3.89627 4.28021 4.30175 4.45158 4.53096 4.62029 4.63514 4.70370 4.74799 4.82671 4.85188 4.99921 5.03470 5.14891 5.16444 5.35396 5.39679 5.51936 5.53076 5.54298 5.58739 5.58879 5.66994 5.73984 5.81628 5.83690 5.90849 6.00427 6.05616 6.11015 6.15594 6.48956 6.53919 6.71035 6.82357 6.93191 7.48972 7.71500 8.30157 8.44483 9.55212 10.11446 10.46493 11.48782 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002031 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.729431 B =13783.946265 C =14719.679948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.095 3.905 3 N -0.606 5.606 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.239 4.239 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.513 3.487 16 O -0.510 6.510 17 C 0.071 3.929 18 H 0.083 0.917 19 C -0.172 4.172 20 O -0.349 6.349 21 C 0.100 3.900 22 C -0.099 4.099 23 C -0.066 4.066 24 C -0.157 4.157 25 C 0.103 3.897 26 F -0.140 7.140 27 C -0.158 4.158 28 C -0.067 4.067 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.021 0.979 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 -9.263 25.339 30.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.028 4.028 3 N -0.341 5.341 4 C -0.014 4.014 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.299 3.701 16 O -0.383 6.383 17 C 0.010 3.990 18 H 0.101 0.899 19 C -0.230 4.230 20 O -0.268 6.268 21 C 0.024 3.976 22 C -0.099 4.099 23 C -0.084 4.084 24 C -0.175 4.175 25 C 0.084 3.916 26 F -0.119 7.119 27 C -0.176 4.176 28 C -0.085 4.085 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.218 0.782 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.191 -8.424 25.348 30.247 hybrid contribution 0.615 0.021 -0.446 0.760 sum -13.576 -8.403 24.902 29.581 Atomic orbital electron populations 1.22258 0.95927 1.02275 1.02659 1.21739 0.94325 0.82854 1.03858 1.47871 1.65631 1.14132 1.06513 1.21716 0.97319 0.99154 0.83198 1.20910 0.92027 0.95715 0.89895 1.42197 1.10734 1.62831 1.21711 1.19154 0.87514 1.27324 1.02988 0.91260 1.24751 0.97886 1.00489 0.97868 1.69650 1.32625 1.38749 1.17173 0.86236 0.84278 0.77381 0.78100 1.21277 1.21647 1.21224 1.20259 0.77924 0.87193 0.84704 1.90757 1.45247 1.15595 1.86744 1.21996 0.99570 0.90296 0.87163 0.89884 1.22269 0.98554 0.99639 1.02537 1.88166 1.67735 1.39964 1.30911 1.21394 0.94377 0.94626 0.87230 1.19612 0.96644 0.97775 0.95915 1.20958 0.97593 0.92412 0.97408 1.21158 1.00547 1.01022 0.94813 1.17786 0.97397 0.87914 0.88507 1.91506 1.95703 1.60774 1.63879 1.21146 0.99106 0.95740 1.01641 1.20937 0.97324 0.97447 0.92784 0.91748 0.91332 0.92817 0.89311 0.90456 0.90390 0.89601 0.96063 0.96419 0.78250 0.93432 0.91220 0.90504 0.90729 0.91950 0.92093 0.84742 0.84486 0.84515 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.05 37.16 0.37 -0.95 16 2 C 0.10 0.89 5.75 -4.04 -0.02 0.87 16 3 N -0.61 -8.40 2.48 -173.68 -0.43 -8.83 16 4 C 0.11 1.87 5.54 -4.04 -0.02 1.85 16 5 C 0.14 3.03 6.58 -4.04 -0.03 3.01 16 6 N -0.73 -19.20 5.60 -59.91 -0.34 -19.54 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 C -0.01 -0.41 5.50 -17.44 -0.10 -0.51 16 10 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 11 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 C 0.51 7.91 6.92 -10.98 -0.08 7.83 16 16 O -0.51 -10.56 16.13 -13.81 -0.22 -10.78 16 17 C 0.07 0.77 2.29 -27.88 -0.06 0.71 16 18 H 0.08 0.65 5.69 -51.93 -0.30 0.35 16 19 C -0.17 -1.56 9.28 37.15 0.34 -1.21 16 20 O -0.35 -4.31 9.56 -54.60 -0.52 -4.84 16 21 C 0.10 0.81 5.87 36.00 0.21 1.02 16 22 C -0.10 -0.88 5.51 -104.62 -0.58 -1.45 16 23 C -0.07 -0.57 9.70 -39.59 -0.38 -0.95 16 24 C -0.16 -1.36 10.03 -39.51 -0.40 -1.75 16 25 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 26 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 27 C -0.16 -1.31 10.03 -39.51 -0.40 -1.71 16 28 C -0.07 -0.54 9.70 -39.59 -0.38 -0.93 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.40 7.01 -51.93 -0.36 0.03 16 32 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 33 H 0.08 0.55 4.78 -51.93 -0.25 0.30 16 34 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 35 H 0.09 1.68 7.35 -51.93 -0.38 1.30 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 41 H 0.08 0.59 6.19 -51.93 -0.32 0.27 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.37 7.73 -51.93 -0.40 -0.04 16 44 H 0.06 0.39 8.03 -51.93 -0.42 -0.03 16 45 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -36.37 402.43 -8.99 -45.37 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.33 Total: 4.68 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.95 Total: -0.54 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.04 Total: -56.41 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.74 Total: -15.62 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.37 -8.99 -45.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273731889.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.369 kcal (2) G-P(sol) polarization free energy of solvation -36.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds