Wall clock time and date at job start Tue Mar 31 2020 21:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.46997 * 2 1 4 4 C 1.46500 * 119.99974 * 265.10386 * 3 2 1 5 5 C 1.53001 * 109.47213 * 270.00004 * 4 3 2 6 6 N 1.46500 * 109.47213 * 180.02562 * 5 4 3 7 7 C 1.36936 * 120.00125 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99541 * 359.97438 * 7 6 5 9 9 C 1.38804 * 119.99926 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00389 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46991 * 59.99639 * 11 9 7 13 13 H 1.48495 * 109.47135 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46760 * 299.99657 * 11 9 7 15 15 C 1.34774 * 119.99889 * 85.10622 * 3 2 1 16 16 O 1.21277 * 120.00134 * 185.45283 * 15 3 2 17 17 C 1.50705 * 119.99895 * 5.44891 * 15 3 2 18 18 H 1.08998 * 109.47001 * 316.17320 * 17 15 3 19 19 C 1.52994 * 109.47125 * 76.17537 * 17 15 3 20 20 O 1.42902 * 109.46921 * 196.17386 * 17 15 3 21 21 C 1.42903 * 113.99968 * 149.99948 * 20 17 15 22 22 C 1.50694 * 109.47040 * 180.02562 * 21 20 17 23 23 C 1.38243 * 119.97577 * 90.00224 * 22 21 20 24 24 C 1.38198 * 120.03011 * 179.74313 * 23 22 21 25 25 C 1.38463 * 119.97149 * 0.25352 * 24 23 22 26 26 F 1.35096 * 120.02678 * 180.02562 * 25 24 23 27 27 C 1.38457 * 119.94746 * 0.02562 * 25 24 23 28 28 C 1.38202 * 119.97529 * 359.97438 * 27 25 24 29 29 H 1.09001 * 109.47351 * 59.99709 * 1 2 3 30 30 H 1.08994 * 109.47504 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47228 * 300.00256 * 1 2 3 32 32 H 1.09001 * 109.47004 * 240.00680 * 2 1 3 33 33 H 1.08999 * 109.47181 * 119.99779 * 2 1 3 34 34 H 1.08999 * 109.47190 * 30.00421 * 4 3 2 35 35 H 1.09001 * 109.46975 * 150.00262 * 4 3 2 36 36 H 1.08997 * 109.47050 * 300.00723 * 5 4 3 37 37 H 1.09001 * 109.46939 * 60.00237 * 5 4 3 38 38 H 0.96995 * 119.99663 * 0.02562 * 6 5 4 39 39 H 0.97004 * 120.00110 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.47230 * 175.15971 * 19 17 15 41 41 H 1.08997 * 109.47355 * 295.16555 * 19 17 15 42 42 H 1.09000 * 109.46867 * 55.16066 * 19 17 15 43 43 H 1.08994 * 109.46693 * 60.00323 * 21 20 17 44 44 H 1.08997 * 109.46911 * 300.00072 * 21 20 17 45 45 H 1.07999 * 119.98817 * 0.02562 * 23 22 21 46 46 H 1.07997 * 120.01824 * 180.27966 * 24 23 22 47 47 H 1.08000 * 120.01522 * 180.02562 * 27 25 24 48 48 H 1.08007 * 119.98641 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3646 2.0358 -1.2641 5 6 3.8401 1.7846 -1.5811 6 7 4.1865 2.4397 -2.8449 7 6 5.4623 2.3514 -3.3347 8 1 6.2131 1.7992 -2.7890 9 6 5.7905 2.9725 -4.5318 10 7 4.8756 3.6458 -5.1965 11 14 7.5311 2.8526 -5.1996 12 1 7.8762 1.4266 -5.4287 13 1 7.6214 3.5955 -6.4822 14 1 8.4790 3.4400 -4.2189 15 6 2.1490 2.0498 1.1629 16 8 2.4580 3.2226 1.1568 17 6 1.9113 1.3400 2.4709 18 1 1.0157 0.7237 2.3923 19 6 3.1143 0.4523 2.7955 20 8 1.7362 2.3041 3.5111 21 6 0.8820 1.8678 4.5704 22 6 0.7689 2.9571 5.6055 23 6 -0.2300 3.9072 5.5021 24 6 -0.3380 4.9035 6.4537 25 6 0.5580 4.9530 7.5082 26 9 0.4531 5.9262 8.4393 27 6 1.5615 4.0043 7.6076 28 6 1.6676 3.0089 6.6547 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.7466 1.6295 -2.0648 35 1 2.1889 3.1081 -1.1781 36 1 4.4580 2.1909 -0.7803 37 1 4.0158 0.7123 -1.6671 38 1 3.5122 2.9359 -3.3346 39 1 5.1050 4.0795 -6.0333 40 1 2.9811 0.0059 3.7809 41 1 3.1965 -0.3361 2.0475 42 1 4.0226 1.0550 2.7894 43 1 1.3008 0.9721 5.0291 44 1 -0.1067 1.6429 4.1705 45 1 -0.9290 3.8681 4.6798 46 1 -1.1212 5.6430 6.3751 47 1 2.2607 4.0416 8.4298 48 1 2.4501 2.2685 6.7323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273731889.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:26 Heat of formation + Delta-G solvation = -106.270169 kcal Electronic energy + Delta-G solvation = -28728.025774 eV Core-core repulsion = 24504.306469 eV Total energy + Delta-G solvation = -4223.719305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.95660 -41.37837 -40.23009 -38.59613 -37.45325 -36.42167 -33.89501 -33.09862 -32.13776 -31.72278 -31.48451 -29.17304 -27.01174 -26.08767 -25.00568 -24.07134 -23.93296 -22.99827 -22.49510 -20.31460 -19.21653 -18.75477 -18.43129 -17.95884 -17.50072 -17.06609 -16.90349 -16.63800 -16.40164 -16.30502 -15.91289 -15.48761 -15.20147 -15.12374 -15.00805 -14.84082 -14.58343 -14.48174 -14.22127 -13.95519 -13.83376 -13.31855 -13.27112 -13.17588 -13.03794 -12.94553 -12.84130 -12.69901 -12.52300 -12.33786 -12.18126 -12.12610 -11.98789 -11.88996 -11.77209 -10.98312 -10.98071 -10.48194 -10.09637 -9.75259 -9.69044 -9.07869 -7.98424 -5.29507 0.00548 0.24849 1.45210 1.49835 1.53571 1.55943 1.70800 2.42690 2.55430 3.03373 3.24315 3.34454 3.42681 3.71141 3.76920 3.89723 3.95528 4.00847 4.06282 4.10543 4.14297 4.19136 4.20291 4.26236 4.43187 4.46634 4.52326 4.55501 4.59393 4.71921 4.80670 4.87733 4.94096 4.94988 4.96913 5.05132 5.09658 5.11361 5.20852 5.23814 5.39770 5.42415 5.49285 5.54508 5.86706 6.06759 6.22745 6.42740 7.15520 7.28755 8.00584 8.25725 9.24708 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.002031 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.729431 B =13783.946265 C =14719.679948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.086 3.914 3 N -0.601 5.601 4 C 0.122 3.878 5 C 0.150 3.850 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.074 0.926 9 C -0.075 4.075 10 N -0.968 5.968 11 Si 0.979 3.021 12 H -0.272 1.272 13 H -0.292 1.292 14 H -0.281 1.281 15 C 0.503 3.497 16 O -0.578 6.578 17 C 0.080 3.920 18 H 0.123 0.877 19 C -0.169 4.169 20 O -0.385 6.385 21 C 0.096 3.904 22 C -0.111 4.111 23 C -0.077 4.077 24 C -0.165 4.165 25 C 0.081 3.919 26 F -0.149 7.149 27 C -0.162 4.162 28 C -0.071 4.071 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.054 0.946 36 H -0.003 1.003 37 H 0.036 0.964 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.152 0.848 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.879 -12.380 26.396 32.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.035 4.035 3 N -0.335 5.335 4 C -0.001 4.001 5 C 0.022 3.978 6 N -0.387 5.387 7 C -0.383 4.383 8 H 0.092 0.908 9 C -0.267 4.267 10 N -0.618 5.618 11 Si 0.807 3.193 12 H -0.197 1.197 13 H -0.218 1.218 14 H -0.207 1.207 15 C 0.291 3.709 16 O -0.456 6.456 17 C 0.019 3.981 18 H 0.141 0.859 19 C -0.227 4.227 20 O -0.305 6.305 21 C 0.020 3.980 22 C -0.112 4.112 23 C -0.095 4.095 24 C -0.183 4.183 25 C 0.062 3.938 26 F -0.128 7.128 27 C -0.181 4.181 28 C -0.089 4.089 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.015 0.985 37 H 0.053 0.947 38 H 0.207 0.793 39 H 0.062 0.938 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.062 0.938 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.164 0.836 46 H 0.166 0.834 47 H 0.170 0.830 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.477 -11.618 26.444 32.309 hybrid contribution 0.656 0.970 -0.716 1.372 sum -13.821 -10.649 25.728 31.086 Atomic orbital electron populations 1.22233 0.94249 1.04012 1.02172 1.22140 0.95683 0.80061 1.05567 1.47979 1.64821 1.15795 1.04887 1.21312 0.95093 0.98024 0.85707 1.20955 0.94125 0.95694 0.86987 1.42395 1.09964 1.63175 1.23134 1.19559 0.88642 1.26957 1.03168 0.90795 1.25650 1.02134 1.00545 0.98365 1.69814 1.34681 1.39848 1.17466 0.85141 0.79218 0.77906 0.77049 1.19729 1.21811 1.20730 1.21322 0.76336 0.86667 0.86531 1.90721 1.48398 1.18719 1.87796 1.22037 1.01989 0.89737 0.84331 0.85934 1.22298 0.96205 0.99138 1.05018 1.88131 1.68841 1.41479 1.32005 1.21651 0.95027 0.95104 0.86191 1.19898 0.96686 0.98185 0.96394 1.21199 0.98120 0.92454 0.97686 1.21361 1.00813 1.01447 0.94721 1.18066 0.98405 0.88397 0.88905 1.91478 1.95842 1.61222 1.64243 1.21400 0.98999 0.95445 1.02241 1.21235 0.97593 0.97703 0.92372 0.93388 0.88391 0.92262 0.89029 0.87375 0.88569 0.92734 0.98549 0.94654 0.79313 0.93786 0.87889 0.88860 0.93792 0.89046 0.90185 0.83642 0.83416 0.82982 0.82655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.05 71.98 0.72 -1.27 16 2 C 0.09 1.34 5.75 86.38 0.50 1.83 16 3 N -0.60 -16.11 2.48 -821.79 -2.04 -18.15 16 4 C 0.12 4.30 5.54 86.38 0.48 4.78 16 5 C 0.15 6.45 6.58 86.38 0.57 7.02 16 6 N -0.74 -39.96 5.60 -343.46 -1.92 -41.89 16 7 C -0.25 -14.68 9.99 84.03 0.84 -13.84 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 9 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 10 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 11 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 14 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 15 C 0.50 15.36 6.92 87.66 0.61 15.97 16 16 O -0.58 -25.06 16.13 15.50 0.25 -24.81 16 17 C 0.08 1.54 2.29 29.85 0.07 1.61 16 18 H 0.12 1.35 5.69 -2.39 -0.01 1.33 16 19 C -0.17 -2.54 9.28 71.98 0.67 -1.87 16 20 O -0.39 -8.87 9.56 -130.46 -1.25 -10.12 16 21 C 0.10 1.27 5.87 71.23 0.42 1.69 16 22 C -0.11 -1.80 5.51 -19.86 -0.11 -1.91 16 23 C -0.08 -1.27 9.70 22.26 0.22 -1.05 16 24 C -0.16 -2.84 10.03 22.31 0.22 -2.62 16 25 C 0.08 1.53 7.30 22.38 0.16 1.70 16 26 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 27 C -0.16 -2.59 10.03 22.31 0.22 -2.36 16 28 C -0.07 -1.05 9.70 22.26 0.22 -0.83 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.65 7.01 -2.39 -0.02 0.63 16 32 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 33 H 0.11 1.03 4.78 -2.39 -0.01 1.02 16 34 H 0.10 3.00 8.07 -2.39 -0.02 2.98 16 35 H 0.05 2.26 7.35 -2.39 -0.02 2.25 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.37 21.17 7.67 -92.71 -0.71 20.46 16 39 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.10 0.88 7.79 -2.39 -0.02 0.86 16 41 H 0.09 1.06 6.19 -2.39 -0.01 1.04 16 42 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 0.66 7.73 -2.39 -0.02 0.65 16 44 H 0.08 0.74 8.03 -2.39 -0.02 0.72 16 45 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 46 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 47 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 48 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -82.98 402.43 4.65 -78.33 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.26 Total: 25.26 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.27 Total: 4.91 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -3.68 Total: -120.39 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.00 Total: -34.94 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -82.98 4.65 -78.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273731889.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.941 kcal (2) G-P(sol) polarization free energy of solvation -82.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds