Wall clock time and date at job start Tue Mar 31 2020 20:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.47295 * 55.00675 * 9 7 6 11 11 C 1.53001 * 109.47580 * 295.00310 * 9 7 6 12 12 O 1.42897 * 109.47125 * 175.00346 * 9 7 6 13 13 C 1.42905 * 114.00137 * 210.00090 * 12 9 7 14 14 C 1.50699 * 109.47290 * 179.97438 * 13 12 9 15 15 C 1.38240 * 119.97375 * 269.73117 * 14 13 12 16 16 C 1.38202 * 120.02509 * 179.72562 * 15 14 13 17 17 C 1.38461 * 119.97451 * 0.56504 * 16 15 14 18 18 F 1.35094 * 120.02977 * 179.68009 * 17 16 15 19 19 C 1.38467 * 119.94534 * 359.70714 * 17 16 15 20 20 C 1.38200 * 119.97331 * 359.97438 * 19 17 16 21 21 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 22 22 C 1.36941 * 120.00103 * 84.99785 * 21 2 1 23 23 H 1.08000 * 119.99734 * 0.02562 * 22 21 2 24 24 C 1.38812 * 119.99814 * 180.02562 * 22 21 2 25 25 N 1.31613 * 120.00446 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99795 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47005 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47173 * 119.99511 * 26 24 22 29 29 H 1.48503 * 109.46673 * 239.99595 * 26 24 22 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 33 33 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 34 34 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 38 38 H 1.09000 * 109.47104 * 300.00481 * 11 9 7 39 39 H 1.09001 * 109.46924 * 59.99897 * 11 9 7 40 40 H 1.08996 * 109.47541 * 179.97438 * 11 9 7 41 41 H 1.08999 * 109.47351 * 299.99964 * 13 12 9 42 42 H 1.09001 * 109.47057 * 59.99916 * 13 12 9 43 43 H 1.08002 * 119.99017 * 359.97249 * 15 14 13 44 44 H 1.08004 * 120.01626 * 180.25100 * 16 15 14 45 45 H 1.07999 * 120.01147 * 179.97438 * 19 17 16 46 46 H 1.07994 * 119.98361 * 180.02562 * 20 19 17 47 47 H 0.97003 * 120.00235 * 265.00555 * 21 2 1 48 48 H 0.96996 * 120.00501 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 1 5.5126 -3.0769 4.0070 11 6 5.3669 -1.3269 5.2548 12 8 7.3053 -2.0501 4.0058 13 6 7.8861 -3.1803 4.6594 14 6 9.3885 -3.0783 4.5990 15 6 10.0765 -3.6363 3.5377 16 6 11.4537 -3.5384 3.4783 17 6 12.1455 -2.8914 4.4883 18 9 13.4923 -2.8008 4.4346 19 6 11.4557 -2.3379 5.5537 20 6 10.0779 -2.4313 5.6075 21 7 2.0183 -0.6905 -1.1963 22 6 2.1490 -0.0072 -2.3758 23 1 1.8925 1.0408 -2.4241 24 6 2.6112 -0.6616 -3.5094 25 7 2.9242 -1.9386 -3.4505 26 14 2.7902 0.2706 -5.1183 27 1 2.3762 1.6830 -4.9207 28 1 4.2070 0.2269 -5.5607 29 1 1.9290 -0.3572 -6.1525 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.7516 -1.7716 1.2053 34 1 1.6054 -0.2620 2.1368 35 1 3.8532 0.4368 1.3572 36 1 3.9994 -1.0729 0.4257 37 1 3.4258 -1.7353 3.1108 38 1 5.7306 -0.2994 5.2538 39 1 4.2769 -1.3264 5.2550 40 1 5.7298 -1.8404 6.1451 41 1 7.5648 -3.2028 5.7007 42 1 7.5640 -4.0941 4.1599 43 1 9.5372 -4.1454 2.7525 44 1 11.9908 -3.9709 2.6470 45 1 11.9942 -1.8334 6.3423 46 1 9.5397 -1.9993 6.4381 47 1 2.2489 -1.6317 -1.1529 48 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274822741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:56 Heat of formation + Delta-G solvation = -100.300146 kcal Electronic energy + Delta-G solvation = -28066.363363 eV Core-core repulsion = 23842.902937 eV Total energy + Delta-G solvation = -4223.460426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.20088 -40.05642 -39.41114 -37.67650 -36.48858 -34.38004 -32.75864 -32.16411 -31.49434 -30.95614 -29.14233 -28.02587 -26.33971 -24.62616 -23.67065 -23.41232 -22.32524 -21.83517 -20.54469 -19.64279 -18.04766 -17.55089 -17.25348 -17.11581 -16.79697 -15.97430 -15.88551 -15.65728 -15.26264 -15.11312 -14.67351 -14.53356 -14.10971 -13.90099 -13.77721 -13.56472 -13.48583 -13.30966 -13.02510 -12.65208 -12.55830 -12.50402 -12.45320 -12.04405 -11.89749 -11.54328 -11.41630 -11.35403 -11.06733 -10.91782 -10.74240 -10.62268 -10.27310 -10.15819 -9.94634 -9.63444 -9.45279 -9.42511 -8.99352 -8.91657 -8.80529 -6.93718 -5.73780 -3.02341 0.69698 0.89730 2.73960 2.77817 3.27926 3.46385 3.52119 3.54196 3.84647 3.92507 4.31710 4.41470 4.54600 4.60600 4.62435 4.68016 4.75751 4.84297 4.85948 5.02614 5.19175 5.24553 5.29832 5.39531 5.40041 5.55185 5.57268 5.61546 5.68184 5.76675 5.78827 5.87179 5.88085 6.06628 6.14080 6.17784 6.34262 6.39513 6.47695 6.51871 6.64765 6.69628 6.81697 6.86691 7.06282 7.63277 7.74170 8.37607 8.44644 9.56182 10.12619 10.47054 11.48981 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.002007 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.015580 B =13951.244522 C =15781.810149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.131 4.131 5 C 0.123 3.877 6 N -0.727 5.727 7 C 0.508 3.492 8 O -0.514 6.514 9 C 0.070 3.930 10 H 0.086 0.914 11 C -0.169 4.169 12 O -0.349 6.349 13 C 0.100 3.900 14 C -0.099 4.099 15 C -0.064 4.064 16 C -0.156 4.156 17 C 0.103 3.897 18 F -0.140 7.140 19 C -0.159 4.159 20 C -0.068 4.068 21 N -0.723 5.723 22 C -0.237 4.237 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.395 0.605 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -5.126 25.124 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C 0.001 3.999 6 N -0.380 5.380 7 C 0.291 3.709 8 O -0.388 6.388 9 C 0.009 3.991 10 H 0.104 0.896 11 C -0.227 4.227 12 O -0.267 6.267 13 C 0.024 3.976 14 C -0.100 4.100 15 C -0.083 4.083 16 C -0.174 4.174 17 C 0.084 3.916 18 F -0.119 7.119 19 C -0.177 4.177 20 C -0.086 4.086 21 N -0.365 5.365 22 C -0.368 4.368 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.220 1.220 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.228 0.772 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.097 -4.435 24.326 26.709 hybrid contribution -0.067 -0.267 -0.602 0.662 sum 10.030 -4.702 23.724 26.183 Atomic orbital electron populations 1.22424 0.99129 1.00807 0.99961 1.20157 0.91879 0.95617 0.86034 0.93270 1.22054 0.93840 1.01781 0.99348 1.21468 0.94370 0.97191 0.86920 1.46042 1.06695 1.57529 1.27746 1.20261 0.82735 0.81306 0.86562 1.90771 1.55094 1.44164 1.48729 1.21934 0.83049 0.99991 0.94166 0.89602 1.22228 1.01707 1.02285 0.96497 1.88159 1.17140 1.43458 1.77936 1.21401 0.89451 0.89464 0.97292 1.19608 0.94440 1.00187 0.95724 1.21003 0.93103 0.97304 0.96844 1.21182 0.95024 1.02024 0.99219 1.17788 0.77010 1.00242 0.96598 1.91504 1.29489 1.94443 1.96440 1.21130 0.94994 1.02848 0.98762 1.20912 0.93032 0.96218 0.98475 1.42456 1.78085 1.10637 1.05361 1.19268 1.36387 0.93854 0.87296 0.91147 1.24725 1.02179 0.95966 0.98069 1.69656 1.51016 1.08683 1.28751 0.86150 0.77332 0.78810 0.84110 1.20579 1.21867 1.21985 0.92726 0.93538 0.94585 0.91606 0.91922 0.91787 0.89678 0.77162 0.90991 0.90841 0.91366 0.92007 0.91904 0.84578 0.84419 0.84575 0.84825 0.78311 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.93 4.87 -26.74 -0.13 -2.06 16 5 C 0.12 2.01 5.56 -4.04 -0.02 1.98 16 6 N -0.73 -9.31 5.52 -60.29 -0.33 -9.64 16 7 C 0.51 7.51 7.18 -10.99 -0.08 7.43 16 8 O -0.51 -10.55 16.51 -14.30 -0.24 -10.78 16 9 C 0.07 0.72 3.13 -27.88 -0.09 0.63 16 10 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 11 C -0.17 -1.24 9.48 37.16 0.35 -0.89 16 12 O -0.35 -4.27 9.51 -55.09 -0.52 -4.80 16 13 C 0.10 0.84 5.87 36.01 0.21 1.05 16 14 C -0.10 -0.92 5.51 -104.62 -0.58 -1.49 16 15 C -0.06 -0.60 9.70 -39.59 -0.38 -0.99 16 16 C -0.16 -1.45 10.03 -39.51 -0.40 -1.85 16 17 C 0.10 1.00 7.30 -39.41 -0.29 0.72 16 18 F -0.14 -1.47 17.27 2.25 0.04 -1.43 16 19 C -0.16 -1.34 10.03 -39.51 -0.40 -1.74 16 20 C -0.07 -0.56 9.70 -39.59 -0.38 -0.94 16 21 N -0.72 -17.58 4.57 -53.43 -0.24 -17.83 16 22 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 26 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.76 7.75 -51.93 -0.40 1.36 16 37 H 0.39 3.51 8.26 -40.82 -0.34 3.18 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.41 7.93 -51.93 -0.41 0.00 16 40 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16 41 H 0.06 0.36 7.82 -51.93 -0.41 -0.04 16 42 H 0.06 0.45 8.03 -51.93 -0.42 0.03 16 43 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 410.15 15.07 6.18 6.18 Total: -1.00 -35.37 410.15 -9.41 -44.78 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.72 Total: 8.06 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -2.27 Total: -4.68 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.15 Total: -55.05 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.76 Total: -15.58 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.37 -9.41 -44.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274822741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.525 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds