Wall clock time and date at job start Tue Mar 31 2020 20:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09000 * 109.47295 * 55.00675 * 9 7 6 11 11 C 1.53001 * 109.47580 * 295.00310 * 9 7 6 12 12 O 1.42897 * 109.47125 * 175.00346 * 9 7 6 13 13 C 1.42905 * 114.00137 * 210.00090 * 12 9 7 14 14 C 1.50699 * 109.47290 * 179.97438 * 13 12 9 15 15 C 1.38240 * 119.97375 * 269.73117 * 14 13 12 16 16 C 1.38202 * 120.02509 * 179.72562 * 15 14 13 17 17 C 1.38461 * 119.97451 * 0.56504 * 16 15 14 18 18 F 1.35094 * 120.02977 * 179.68009 * 17 16 15 19 19 C 1.38467 * 119.94534 * 359.70714 * 17 16 15 20 20 C 1.38200 * 119.97331 * 359.97438 * 19 17 16 21 21 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 22 22 C 1.36941 * 120.00103 * 84.99785 * 21 2 1 23 23 H 1.08000 * 119.99734 * 0.02562 * 22 21 2 24 24 C 1.38812 * 119.99814 * 180.02562 * 22 21 2 25 25 N 1.31613 * 120.00446 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99795 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47005 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47173 * 119.99511 * 26 24 22 29 29 H 1.48503 * 109.46673 * 239.99595 * 26 24 22 30 30 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 31 31 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 33 33 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 34 34 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 37 37 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 38 38 H 1.09000 * 109.47104 * 300.00481 * 11 9 7 39 39 H 1.09001 * 109.46924 * 59.99897 * 11 9 7 40 40 H 1.08996 * 109.47541 * 179.97438 * 11 9 7 41 41 H 1.08999 * 109.47351 * 299.99964 * 13 12 9 42 42 H 1.09001 * 109.47057 * 59.99916 * 13 12 9 43 43 H 1.08002 * 119.99017 * 359.97249 * 15 14 13 44 44 H 1.08004 * 120.01626 * 180.25100 * 16 15 14 45 45 H 1.07999 * 120.01147 * 179.97438 * 19 17 16 46 46 H 1.07994 * 119.98361 * 180.02562 * 20 19 17 47 47 H 0.97003 * 120.00235 * 265.00555 * 21 2 1 48 48 H 0.96996 * 120.00501 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 1 5.5126 -3.0769 4.0070 11 6 5.3669 -1.3269 5.2548 12 8 7.3053 -2.0501 4.0058 13 6 7.8861 -3.1803 4.6594 14 6 9.3885 -3.0783 4.5990 15 6 10.0765 -3.6363 3.5377 16 6 11.4537 -3.5384 3.4783 17 6 12.1455 -2.8914 4.4883 18 9 13.4923 -2.8008 4.4346 19 6 11.4557 -2.3379 5.5537 20 6 10.0779 -2.4313 5.6075 21 7 2.0183 -0.6905 -1.1963 22 6 2.1490 -0.0072 -2.3758 23 1 1.8925 1.0408 -2.4241 24 6 2.6112 -0.6616 -3.5094 25 7 2.9242 -1.9386 -3.4505 26 14 2.7902 0.2706 -5.1183 27 1 2.3762 1.6830 -4.9207 28 1 4.2070 0.2269 -5.5607 29 1 1.9290 -0.3572 -6.1525 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.7516 -1.7716 1.2053 34 1 1.6054 -0.2620 2.1368 35 1 3.8532 0.4368 1.3572 36 1 3.9994 -1.0729 0.4257 37 1 3.4258 -1.7353 3.1108 38 1 5.7306 -0.2994 5.2538 39 1 4.2769 -1.3264 5.2550 40 1 5.7298 -1.8404 6.1451 41 1 7.5648 -3.2028 5.7007 42 1 7.5640 -4.0941 4.1599 43 1 9.5372 -4.1454 2.7525 44 1 11.9908 -3.9709 2.6470 45 1 11.9942 -1.8334 6.3423 46 1 9.5397 -1.9993 6.4381 47 1 2.2489 -1.6317 -1.1529 48 1 3.2475 -2.3958 -4.2425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274822741.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:55 Heat of formation + Delta-G solvation = -123.395242 kcal Electronic energy + Delta-G solvation = -28067.364842 eV Core-core repulsion = 23842.902937 eV Total energy + Delta-G solvation = -4224.461904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96391 -41.05674 -40.19451 -38.60224 -37.96877 -35.84386 -34.22217 -33.30862 -32.14618 -31.81425 -30.79911 -29.41096 -26.99517 -25.97422 -25.26184 -24.07303 -23.56830 -22.50574 -21.80824 -21.02307 -19.29520 -18.75814 -18.38532 -18.06275 -17.51192 -17.04148 -16.76416 -16.65248 -16.47804 -16.31892 -15.89611 -15.56829 -15.34938 -15.27787 -14.87297 -14.59339 -14.48182 -14.20627 -14.10635 -13.98208 -13.55990 -13.37892 -13.27085 -13.23221 -13.08381 -12.85978 -12.63489 -12.57963 -12.25480 -12.23020 -12.10060 -12.06144 -11.99769 -11.61611 -11.57966 -11.01452 -10.94427 -10.46822 -10.10680 -10.09168 -9.70166 -8.96925 -7.93027 -5.19156 -0.00091 0.23786 1.44895 1.46645 1.55394 1.61148 1.88050 2.49019 2.56729 3.11429 3.23500 3.41533 3.66346 3.70438 3.83193 3.93388 3.93707 3.99019 4.03075 4.11527 4.19392 4.25490 4.25661 4.39369 4.46439 4.58892 4.68614 4.76763 4.79417 4.85597 4.91752 4.93091 4.96425 5.04920 5.10446 5.12764 5.20115 5.23601 5.27258 5.42019 5.46117 5.48734 5.55011 5.63907 5.85943 6.09080 6.30697 6.62616 7.30408 7.36573 8.15235 8.35876 9.30784 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.002007 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.015580 B =13951.244522 C =15781.810149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.133 3.867 6 N -0.707 5.707 7 C 0.499 3.501 8 O -0.584 6.584 9 C 0.076 3.924 10 H 0.121 0.879 11 C -0.163 4.163 12 O -0.386 6.386 13 C 0.097 3.903 14 C -0.111 4.111 15 C -0.080 4.080 16 C -0.167 4.167 17 C 0.082 3.918 18 F -0.149 7.149 19 C -0.160 4.160 20 C -0.068 4.068 21 N -0.735 5.735 22 C -0.230 4.230 23 H 0.074 0.926 24 C -0.080 4.080 25 N -0.970 5.970 26 Si 0.965 3.035 27 H -0.266 1.266 28 H -0.299 1.299 29 H -0.293 1.293 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.033 0.967 37 H 0.419 0.581 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.156 0.844 46 H 0.160 0.840 47 H 0.372 0.628 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 -5.004 28.296 29.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.059 0.941 4 C -0.152 4.152 5 C 0.009 3.991 6 N -0.361 5.361 7 C 0.285 3.715 8 O -0.463 6.463 9 C 0.015 3.985 10 H 0.138 0.862 11 C -0.220 4.220 12 O -0.305 6.305 13 C 0.022 3.978 14 C -0.112 4.112 15 C -0.098 4.098 16 C -0.185 4.185 17 C 0.063 3.937 18 F -0.127 7.127 19 C -0.178 4.178 20 C -0.086 4.086 21 N -0.376 5.376 22 C -0.363 4.363 23 H 0.092 0.908 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.795 3.205 27 H -0.191 1.191 28 H -0.227 1.227 29 H -0.220 1.220 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.174 0.826 46 H 0.178 0.822 47 H 0.204 0.796 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.251 -4.301 27.574 29.101 hybrid contribution 0.474 -0.266 -1.501 1.597 sum 8.725 -4.567 26.073 27.870 Atomic orbital electron populations 1.22254 0.96993 1.01102 1.00861 1.20488 0.93249 0.95183 0.85767 0.94135 1.21905 0.92156 1.02229 0.98905 1.21087 0.95499 0.95987 0.86516 1.45792 1.06928 1.56670 1.26743 1.21338 0.82498 0.80320 0.87318 1.90739 1.56842 1.47293 1.51384 1.22045 0.82537 1.01375 0.92536 0.86163 1.22239 1.03059 1.00967 0.95755 1.88115 1.18249 1.45190 1.78950 1.21620 0.88559 0.88677 0.98992 1.19903 0.95368 1.00101 0.95801 1.21189 0.93252 0.97940 0.97453 1.21347 0.95317 1.02255 0.99605 1.18053 0.76835 1.01305 0.97535 1.91477 1.30088 1.94619 1.96558 1.21419 0.95418 1.02300 0.98698 1.21238 0.92953 0.95529 0.98898 1.42658 1.78359 1.10240 1.06303 1.19637 1.34115 0.94051 0.88456 0.90843 1.25477 1.03456 0.96896 1.01317 1.69801 1.53072 1.10136 1.29112 0.85188 0.76545 0.78360 0.80439 1.19051 1.22711 1.21996 0.95024 0.93513 0.90473 0.90703 0.87346 0.93416 0.94890 0.74298 0.93011 0.88581 0.88509 0.88688 0.90905 0.84264 0.83722 0.82639 0.82199 0.79626 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 9.49 71.98 0.68 -4.15 16 2 C 0.16 5.89 2.89 44.99 0.13 6.02 16 3 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 4 C -0.11 -3.07 4.87 30.59 0.15 -2.92 16 5 C 0.13 4.34 5.56 86.38 0.48 4.82 16 6 N -0.71 -17.03 5.52 -463.06 -2.55 -19.58 16 7 C 0.50 14.52 7.18 87.66 0.63 15.15 16 8 O -0.58 -25.02 16.51 15.96 0.26 -24.76 16 9 C 0.08 1.37 3.13 29.85 0.09 1.46 16 10 H 0.12 1.33 7.79 -2.39 -0.02 1.31 16 11 C -0.16 -1.78 9.48 71.98 0.68 -1.10 16 12 O -0.39 -8.92 9.51 -129.99 -1.24 -10.15 16 13 C 0.10 1.40 5.87 71.24 0.42 1.82 16 14 C -0.11 -1.93 5.51 -19.86 -0.11 -2.04 16 15 C -0.08 -1.52 9.70 22.26 0.22 -1.30 16 16 C -0.17 -3.20 10.03 22.31 0.22 -2.98 16 17 C 0.08 1.61 7.30 22.38 0.16 1.77 16 18 F -0.15 -3.18 17.27 44.97 0.78 -2.40 16 19 C -0.16 -2.54 10.03 22.32 0.22 -2.32 16 20 C -0.07 -1.00 9.70 22.26 0.22 -0.78 16 21 N -0.73 -36.18 4.57 -322.95 -1.48 -37.66 16 22 C -0.23 -12.88 9.93 84.03 0.83 -12.05 16 23 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 24 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 25 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 26 Si 0.96 47.68 29.55 68.60 2.03 49.71 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 29 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 30 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.03 1.43 7.75 -2.39 -0.02 1.41 16 37 H 0.42 5.95 8.26 -92.71 -0.77 5.18 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.61 7.93 -2.39 -0.02 0.59 16 40 H 0.10 0.55 7.87 -2.39 -0.02 0.53 16 41 H 0.10 0.71 7.82 -2.39 -0.02 0.69 16 42 H 0.07 0.87 8.03 -2.39 -0.02 0.86 16 43 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 44 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.37 19.78 7.80 -92.71 -0.72 19.05 16 48 H 0.25 15.13 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -82.62 410.15 3.06 -79.57 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.52 Total: 28.43 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.50 Total: -2.79 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -3.75 Total: -117.61 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -0.97 Total: -34.91 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -82.62 3.06 -79.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274822741.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.830 kcal (2) G-P(sol) polarization free energy of solvation -82.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds