Wall clock time and date at job start Tue Mar 31 2020 21:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35958 * 116.99955 * 2 1 4 4 C 1.38658 * 120.06087 * 359.97438 * 3 2 1 5 5 C 1.38186 * 119.96519 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.09501 * 359.97438 * 5 4 3 7 7 C 1.38250 * 120.12755 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.98462 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46928 * 265.00262 * 8 7 6 10 10 C 1.50703 * 109.46928 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99868 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99928 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99754 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46754 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.47222 * 65.00228 * 14 13 12 16 16 C 1.53008 * 109.46953 * 185.00388 * 14 13 12 17 17 N 1.46505 * 109.47075 * 304.99876 * 14 13 12 18 18 C 1.46498 * 120.00400 * 300.00411 * 17 14 13 19 19 C 1.36942 * 119.99501 * 120.00365 * 17 14 13 20 20 H 1.08000 * 119.99994 * 20.35785 * 19 17 14 21 21 C 1.38810 * 119.99655 * 200.36621 * 19 17 14 22 22 N 1.31615 * 120.00320 * 14.98966 * 21 19 17 23 23 Si 1.86797 * 119.99774 * 194.99679 * 21 19 17 24 24 H 1.48499 * 109.47424 * 84.99746 * 23 21 19 25 25 H 1.48500 * 109.47213 * 204.99862 * 23 21 19 26 26 H 1.48497 * 109.47184 * 324.99943 * 23 21 19 27 27 C 1.38330 * 120.02914 * 0.02562 * 7 6 5 28 28 F 1.35104 * 120.04688 * 180.27334 * 27 7 6 29 29 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47154 * 299.99893 * 1 2 3 31 31 H 1.09007 * 109.46899 * 59.99503 * 1 2 3 32 32 H 1.07999 * 120.01839 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.94925 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.93145 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47080 * 25.00200 * 8 7 6 36 36 H 1.08998 * 109.47269 * 145.00729 * 8 7 6 37 37 H 1.09001 * 109.47190 * 299.99871 * 9 8 7 38 38 H 1.08994 * 109.47161 * 60.00446 * 9 8 7 39 39 H 0.96999 * 120.00051 * 0.02562 * 12 10 9 40 40 H 1.08992 * 109.47356 * 300.00521 * 13 12 10 41 41 H 1.08998 * 109.47157 * 60.00931 * 13 12 10 42 42 H 1.08998 * 109.46756 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.46973 * 300.00442 * 16 14 13 44 44 H 1.09004 * 109.47024 * 60.00175 * 16 14 13 45 45 H 1.08997 * 109.47096 * 95.11588 * 18 17 14 46 46 H 1.09001 * 109.47178 * 215.11790 * 18 17 14 47 47 H 1.09006 * 109.46826 * 335.11400 * 18 17 14 48 48 H 0.96998 * 120.00258 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9217 3.6053 -0.0011 6 6 3.3024 3.6776 -0.0005 7 6 4.0580 2.5199 0.0011 8 6 5.5628 2.6025 0.0022 9 6 6.0800 2.5037 -1.4344 10 6 7.5848 2.5857 -1.4331 11 8 8.1845 2.7103 -0.3863 12 7 8.2642 2.5195 -2.5952 13 6 9.7270 2.5998 -2.5940 14 6 10.2443 2.5009 -4.0306 15 1 9.9084 3.3687 -4.5983 16 6 11.7738 2.4592 -4.0202 17 7 9.7267 1.2798 -4.6530 18 6 10.0411 -0.0281 -4.0729 19 6 8.9490 1.3612 -5.7773 20 1 8.9791 2.2489 -6.3917 21 6 8.1219 0.3027 -6.1270 22 7 7.8548 -0.6415 -5.2499 23 14 7.3881 0.2183 -7.8427 24 1 8.3595 -0.4218 -8.7657 25 1 6.1376 -0.5820 -7.8074 26 1 7.0837 1.5914 -8.3190 27 6 3.4333 1.2856 0.0016 28 9 4.1713 0.1540 0.0088 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2137 2.3200 -0.0014 33 1 1.3342 4.5115 -0.0011 34 1 3.7916 4.6405 -0.0005 35 1 5.8741 3.5527 0.4360 36 1 5.9712 1.7823 0.5926 37 1 5.7687 1.5535 -1.8681 38 1 5.6716 3.3239 -2.0247 39 1 7.7846 2.4195 -3.4324 40 1 10.0384 3.5501 -2.1607 41 1 10.1354 1.7799 -2.0033 42 1 12.1422 2.3892 -5.0436 43 1 12.1588 3.3676 -3.5570 44 1 12.1097 1.5914 -3.4525 45 1 9.2319 -0.3358 -3.4107 46 1 10.1563 -0.7614 -4.8710 47 1 10.9692 0.0399 -3.5052 48 1 7.2766 -1.3810 -5.4941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275843829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:50 Heat of formation + Delta-G solvation = -80.108918 kcal Electronic energy + Delta-G solvation = -29550.115643 eV Core-core repulsion = 25327.530775 eV Total energy + Delta-G solvation = -4222.584869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.72003 -40.20454 -39.19427 -37.87742 -36.68565 -33.79593 -33.53300 -31.99717 -30.46375 -29.77241 -29.18052 -27.58181 -26.08185 -25.97702 -24.05204 -22.94060 -22.71417 -21.22455 -19.66475 -19.15401 -18.22809 -17.20186 -17.06334 -16.91689 -16.49431 -16.22126 -15.47089 -15.32399 -15.08304 -14.96898 -14.85871 -14.62475 -14.12594 -13.93627 -13.38310 -13.19198 -12.90582 -12.78988 -12.68581 -12.53664 -12.26162 -12.10826 -12.02564 -11.94211 -11.71973 -11.56197 -11.26814 -11.15914 -11.05471 -10.84790 -10.78952 -10.68968 -10.39742 -10.28400 -9.84491 -9.77912 -9.35553 -8.84005 -8.58542 -8.36769 -8.30168 -6.83218 -5.75229 -3.20721 0.94217 1.09125 2.91249 3.22276 3.35558 3.36372 3.42590 3.43907 3.89711 4.13947 4.45425 4.49523 4.60767 4.79230 4.85299 4.97262 5.02503 5.05912 5.18542 5.21257 5.37092 5.39879 5.40749 5.55906 5.63894 5.72215 5.83136 5.88977 5.98813 5.99094 6.11001 6.12411 6.17992 6.24125 6.31675 6.39038 6.41605 6.48869 6.71223 6.82105 6.92206 7.08387 7.20232 7.40669 7.72988 7.80188 8.27523 8.34519 8.87573 9.19722 9.83686 10.32552 11.27963 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003062 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.082581 B = 9142.607754 C =10716.932959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.095 3.905 4 C -0.190 4.190 5 C -0.090 4.090 6 C -0.125 4.125 7 C -0.074 4.074 8 C -0.062 4.062 9 C -0.135 4.135 10 C 0.512 3.488 11 O -0.566 6.566 12 N -0.700 5.700 13 C 0.108 3.892 14 C 0.158 3.842 15 H 0.068 0.932 16 C -0.158 4.158 17 N -0.594 5.594 18 C 0.163 3.837 19 C -0.262 4.262 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.075 3.925 28 F -0.125 7.125 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.415 0.585 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.030 0.970 46 H 0.041 0.959 47 H -0.001 1.001 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.863 7.927 10.403 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.049 3.951 4 C -0.209 4.209 5 C -0.108 4.108 6 C -0.144 4.144 7 C -0.075 4.075 8 C -0.100 4.100 9 C -0.175 4.175 10 C 0.298 3.702 11 O -0.446 6.446 12 N -0.351 5.351 13 C -0.019 4.019 14 C 0.049 3.951 15 H 0.086 0.914 16 C -0.218 4.218 17 N -0.317 5.317 18 C 0.019 3.981 19 C -0.392 4.392 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.055 3.945 28 F -0.104 7.104 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.251 0.749 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.017 0.983 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.427 7.591 11.086 18.302 hybrid contribution -0.909 -0.453 -1.431 1.755 sum -13.336 7.138 9.654 17.945 Atomic orbital electron populations 1.23104 0.78067 1.04246 1.01347 1.86166 1.21594 1.25828 1.88680 1.19013 0.90793 0.85656 0.99667 1.21097 1.00111 0.91584 1.08076 1.20965 0.94533 0.97098 0.98201 1.20904 0.93442 0.97721 1.02297 1.19908 0.97138 0.90895 0.99523 1.20281 0.88015 1.04891 0.96809 1.21584 0.93055 1.05022 0.97816 1.20430 0.89637 0.76295 0.83866 1.90630 1.70942 1.51418 1.31641 1.45860 1.07797 1.71911 1.09502 1.21919 0.80214 1.00036 0.99718 1.20640 0.92381 0.91302 0.90751 0.91420 1.22176 0.97519 1.00445 1.01639 1.43959 1.58133 0.99763 1.29858 1.20753 0.94361 0.86389 0.96640 1.19209 1.17293 1.03015 0.99660 0.91396 1.24932 0.97957 0.98598 0.97818 1.70091 1.38649 1.13396 1.32265 0.86348 0.78279 0.77522 0.84783 1.21573 1.21849 1.20636 1.16869 0.85829 0.82975 1.08858 1.91534 1.76285 1.48581 1.93992 0.87990 0.92562 0.92439 0.84729 0.85110 0.84707 0.89486 0.89638 0.88460 0.89017 0.74852 0.93006 0.92511 0.92464 0.93597 0.92966 0.95195 0.94071 0.98263 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.89 10.36 -19.61 -0.20 -4.09 16 3 C 0.09 1.21 6.69 -39.18 -0.26 0.94 16 4 C -0.19 -1.83 9.04 -39.45 -0.36 -2.19 16 5 C -0.09 -0.80 10.04 -39.59 -0.40 -1.19 16 6 C -0.13 -1.28 9.68 -39.57 -0.38 -1.66 16 7 C -0.07 -0.94 5.14 -104.58 -0.54 -1.48 16 8 C -0.06 -0.87 4.41 -27.88 -0.12 -0.99 16 9 C -0.13 -2.06 5.68 -27.88 -0.16 -2.22 16 10 C 0.51 9.52 7.83 -10.99 -0.09 9.44 16 11 O -0.57 -11.91 15.98 5.55 0.09 -11.82 16 12 N -0.70 -13.45 5.39 -60.29 -0.32 -13.77 16 13 C 0.11 2.03 4.97 -4.04 -0.02 2.01 16 14 C 0.16 3.04 2.87 -67.92 -0.19 2.84 16 15 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 16 C -0.16 -2.64 9.18 37.16 0.34 -2.30 16 17 N -0.59 -13.82 2.29 -173.47 -0.40 -14.21 16 18 C 0.16 3.94 8.11 59.85 0.49 4.42 16 19 C -0.26 -6.68 9.34 -15.06 -0.14 -6.82 16 20 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 21 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 22 N -0.90 -25.01 10.67 55.49 0.59 -24.42 16 23 Si 0.90 21.05 29.58 -169.99 -5.03 16.02 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.07 1.08 7.25 -39.30 -0.28 0.80 16 28 F -0.13 -2.13 16.41 2.25 0.04 -2.10 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.06 0.36 7.66 -51.92 -0.40 -0.04 16 32 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.09 1.12 8.01 -51.93 -0.42 0.71 16 36 H 0.09 1.34 7.74 -51.93 -0.40 0.94 16 37 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.41 8.37 7.89 -40.82 -0.32 8.05 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 45 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 46 H 0.04 1.08 7.21 -51.93 -0.37 0.70 16 47 H 0.00 -0.02 6.44 -51.93 -0.33 -0.36 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -31.25 396.85 -7.92 -39.17 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.45 Total: 6.39 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.21 Total: 2.86 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.13 Total: -52.40 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.11 Total: -15.91 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.25 -7.92 -39.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275843829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.940 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds