Wall clock time and date at job start Tue Mar 31 2020 21:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35958 * 116.99955 * 2 1 4 4 C 1.38658 * 120.06087 * 359.97438 * 3 2 1 5 5 C 1.38186 * 119.96519 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.09501 * 359.97438 * 5 4 3 7 7 C 1.38250 * 120.12755 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.98462 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46928 * 265.00262 * 8 7 6 10 10 C 1.50703 * 109.46928 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99868 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99928 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99754 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46754 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.47222 * 65.00228 * 14 13 12 16 16 C 1.53008 * 109.46953 * 185.00388 * 14 13 12 17 17 N 1.46505 * 109.47075 * 304.99876 * 14 13 12 18 18 C 1.46498 * 120.00400 * 300.00411 * 17 14 13 19 19 C 1.36942 * 119.99501 * 120.00365 * 17 14 13 20 20 H 1.08000 * 119.99994 * 20.35785 * 19 17 14 21 21 C 1.38810 * 119.99655 * 200.36621 * 19 17 14 22 22 N 1.31615 * 120.00320 * 14.98966 * 21 19 17 23 23 Si 1.86797 * 119.99774 * 194.99679 * 21 19 17 24 24 H 1.48499 * 109.47424 * 84.99746 * 23 21 19 25 25 H 1.48500 * 109.47213 * 204.99862 * 23 21 19 26 26 H 1.48497 * 109.47184 * 324.99943 * 23 21 19 27 27 C 1.38330 * 120.02914 * 0.02562 * 7 6 5 28 28 F 1.35104 * 120.04688 * 180.27334 * 27 7 6 29 29 H 1.08999 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47154 * 299.99893 * 1 2 3 31 31 H 1.09007 * 109.46899 * 59.99503 * 1 2 3 32 32 H 1.07999 * 120.01839 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.94925 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.93145 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47080 * 25.00200 * 8 7 6 36 36 H 1.08998 * 109.47269 * 145.00729 * 8 7 6 37 37 H 1.09001 * 109.47190 * 299.99871 * 9 8 7 38 38 H 1.08994 * 109.47161 * 60.00446 * 9 8 7 39 39 H 0.96999 * 120.00051 * 0.02562 * 12 10 9 40 40 H 1.08992 * 109.47356 * 300.00521 * 13 12 10 41 41 H 1.08998 * 109.47157 * 60.00931 * 13 12 10 42 42 H 1.08998 * 109.46756 * 180.02562 * 16 14 13 43 43 H 1.08996 * 109.46973 * 300.00442 * 16 14 13 44 44 H 1.09004 * 109.47024 * 60.00175 * 16 14 13 45 45 H 1.08997 * 109.47096 * 95.11588 * 18 17 14 46 46 H 1.09001 * 109.47178 * 215.11790 * 18 17 14 47 47 H 1.09006 * 109.46826 * 335.11400 * 18 17 14 48 48 H 0.96998 * 120.00258 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9217 3.6053 -0.0011 6 6 3.3024 3.6776 -0.0005 7 6 4.0580 2.5199 0.0011 8 6 5.5628 2.6025 0.0022 9 6 6.0800 2.5037 -1.4344 10 6 7.5848 2.5857 -1.4331 11 8 8.1845 2.7103 -0.3863 12 7 8.2642 2.5195 -2.5952 13 6 9.7270 2.5998 -2.5940 14 6 10.2443 2.5009 -4.0306 15 1 9.9084 3.3687 -4.5983 16 6 11.7738 2.4592 -4.0202 17 7 9.7267 1.2798 -4.6530 18 6 10.0411 -0.0281 -4.0729 19 6 8.9490 1.3612 -5.7773 20 1 8.9791 2.2489 -6.3917 21 6 8.1219 0.3027 -6.1270 22 7 7.8548 -0.6415 -5.2499 23 14 7.3881 0.2183 -7.8427 24 1 8.3595 -0.4218 -8.7657 25 1 6.1376 -0.5820 -7.8074 26 1 7.0837 1.5914 -8.3190 27 6 3.4333 1.2856 0.0016 28 9 4.1713 0.1540 0.0088 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2137 2.3200 -0.0014 33 1 1.3342 4.5115 -0.0011 34 1 3.7916 4.6405 -0.0005 35 1 5.8741 3.5527 0.4360 36 1 5.9712 1.7823 0.5926 37 1 5.7687 1.5535 -1.8681 38 1 5.6716 3.3239 -2.0247 39 1 7.7846 2.4195 -3.4324 40 1 10.0384 3.5501 -2.1607 41 1 10.1354 1.7799 -2.0033 42 1 12.1422 2.3892 -5.0436 43 1 12.1588 3.3676 -3.5570 44 1 12.1097 1.5914 -3.4525 45 1 9.2319 -0.3358 -3.4107 46 1 10.1563 -0.7614 -4.8710 47 1 10.9692 0.0399 -3.5052 48 1 7.2766 -1.3810 -5.4941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275843829.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:49 Heat of formation + Delta-G solvation = -98.647570 kcal Electronic energy + Delta-G solvation = -29550.919539 eV Core-core repulsion = 25327.530775 eV Total energy + Delta-G solvation = -4223.388765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.85466 -41.07137 -40.65380 -38.80470 -38.34076 -35.36303 -34.78604 -33.72600 -31.32865 -31.17996 -30.55124 -28.25672 -28.01023 -27.34625 -25.34451 -24.70090 -23.55376 -22.18525 -21.21068 -20.75553 -19.12030 -18.83047 -18.13895 -18.07165 -17.77126 -17.19209 -17.12462 -16.85682 -16.46761 -16.05600 -15.86687 -15.69937 -15.48976 -15.18621 -14.82790 -14.52274 -14.43998 -14.31291 -13.82672 -13.73508 -13.59098 -13.51413 -13.16515 -13.04580 -12.92837 -12.82412 -12.59485 -12.50615 -12.47155 -12.27286 -12.08893 -12.08264 -11.98662 -11.95782 -11.72218 -11.47196 -10.86450 -10.59433 -9.87946 -9.76084 -9.22830 -8.79223 -7.76665 -5.23239 0.08073 0.25626 1.49052 1.52107 1.58500 1.71084 2.17730 2.39401 2.53869 2.61448 3.27335 3.36967 3.55851 3.66763 3.83675 3.93818 4.03518 4.04973 4.09331 4.24269 4.27698 4.36880 4.37550 4.42659 4.47652 4.59488 4.63039 4.69538 4.72913 4.83582 4.86616 4.88355 4.98461 5.07152 5.09391 5.13297 5.28548 5.30678 5.31830 5.43567 5.49236 5.64654 5.69030 5.71855 5.75378 6.30680 6.35097 6.71095 7.18501 7.33486 7.91220 8.36273 9.25047 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003062 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.082581 B = 9142.607754 C =10716.932959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.343 6.343 3 C 0.081 3.919 4 C -0.182 4.182 5 C -0.076 4.076 6 C -0.123 4.123 7 C -0.084 4.084 8 C -0.054 4.054 9 C -0.125 4.125 10 C 0.509 3.491 11 O -0.591 6.591 12 N -0.704 5.704 13 C 0.113 3.887 14 C 0.156 3.844 15 H 0.076 0.924 16 C -0.149 4.149 17 N -0.602 5.602 18 C 0.182 3.818 19 C -0.258 4.258 20 H 0.077 0.923 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.958 3.042 24 H -0.293 1.293 25 H -0.303 1.303 26 H -0.265 1.265 27 C 0.027 3.973 28 F -0.155 7.155 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.161 0.839 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.410 0.590 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.046 0.954 45 H -0.003 1.003 46 H 0.013 0.987 47 H 0.023 0.977 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.307 11.136 10.073 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.034 3.966 4 C -0.201 4.201 5 C -0.094 4.094 6 C -0.141 4.141 7 C -0.085 4.085 8 C -0.091 4.091 9 C -0.165 4.165 10 C 0.296 3.704 11 O -0.474 6.474 12 N -0.354 5.354 13 C -0.013 4.013 14 C 0.049 3.951 15 H 0.094 0.906 16 C -0.208 4.208 17 N -0.326 5.326 18 C 0.037 3.963 19 C -0.387 4.387 20 H 0.095 0.905 21 C -0.240 4.240 22 N -0.578 5.578 23 Si 0.788 3.212 24 H -0.221 1.221 25 H -0.230 1.230 26 H -0.190 1.190 27 C 0.008 3.992 28 F -0.134 7.134 29 H 0.132 0.868 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.190 0.810 34 H 0.179 0.821 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.138 0.862 39 H 0.246 0.754 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.065 0.935 45 H 0.016 0.984 46 H 0.032 0.968 47 H 0.041 0.959 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.857 10.841 10.753 20.620 hybrid contribution -0.492 -1.389 -1.285 1.955 sum -14.349 9.452 9.468 19.618 Atomic orbital electron populations 1.23431 0.75591 1.05734 1.02905 1.86121 1.24304 1.26447 1.88816 1.19248 0.90365 0.86857 1.00080 1.21525 1.01592 0.90689 1.06255 1.21467 0.94180 0.98245 0.95485 1.21252 0.94229 0.97546 1.01117 1.19866 0.96296 0.91428 1.00911 1.20145 0.89288 1.04322 0.95371 1.21547 0.90699 1.04968 0.99254 1.20957 0.90903 0.75319 0.83193 1.90608 1.71783 1.52613 1.32358 1.45956 1.08047 1.71892 1.09460 1.21864 0.80073 1.00226 0.99164 1.20854 0.93990 0.89677 0.90548 0.90556 1.22067 0.95122 1.01877 1.01781 1.44105 1.57967 1.00684 1.29796 1.20400 0.94221 0.86516 0.95186 1.19529 1.16301 1.02812 1.00106 0.90518 1.25573 0.99064 0.98765 1.00583 1.70264 1.39805 1.13976 1.33737 0.85413 0.76802 0.77794 0.81165 1.22078 1.23036 1.18993 1.17425 0.87041 0.82778 1.11979 1.91441 1.77155 1.50214 1.94603 0.86794 0.90613 0.91062 0.81521 0.81005 0.82138 0.88136 0.92528 0.90467 0.86174 0.75417 0.90980 0.94498 0.92705 0.90350 0.93539 0.98427 0.96785 0.95866 0.94703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -8.74 10.36 -93.07 -0.96 -9.70 16 3 C 0.08 2.04 6.69 22.53 0.15 2.19 16 4 C -0.18 -3.01 9.04 22.36 0.20 -2.80 16 5 C -0.08 -1.05 10.04 22.26 0.22 -0.82 16 6 C -0.12 -2.18 9.68 22.28 0.22 -1.97 16 7 C -0.08 -2.15 5.14 -19.84 -0.10 -2.26 16 8 C -0.05 -1.54 4.41 29.85 0.13 -1.40 16 9 C -0.12 -3.89 5.68 29.85 0.17 -3.73 16 10 C 0.51 19.20 7.83 87.66 0.69 19.89 16 11 O -0.59 -25.23 15.98 -3.04 -0.05 -25.28 16 12 N -0.70 -27.11 5.39 -463.06 -2.49 -29.61 16 13 C 0.11 4.16 4.97 86.38 0.43 4.59 16 14 C 0.16 5.78 2.87 45.00 0.13 5.91 16 15 H 0.08 2.71 7.85 -2.39 -0.02 2.69 16 16 C -0.15 -4.63 9.18 71.98 0.66 -3.97 16 17 N -0.60 -27.90 2.29 -702.74 -1.61 -29.51 16 18 C 0.18 8.98 8.11 127.77 1.04 10.02 16 19 C -0.26 -12.98 9.34 84.03 0.79 -12.20 16 20 H 0.08 3.70 7.81 -2.91 -0.02 3.68 16 21 C -0.04 -2.34 5.06 84.86 0.43 -1.91 16 22 N -0.93 -53.48 10.67 21.65 0.23 -53.25 16 23 Si 0.96 43.54 29.58 68.60 2.03 45.57 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.03 0.83 7.25 22.45 0.16 1.00 16 28 F -0.16 -5.83 16.41 44.97 0.74 -5.09 16 29 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 0.68 7.66 -2.39 -0.02 0.67 16 31 H 0.07 0.73 7.66 -2.38 -0.02 0.71 16 32 H 0.17 1.59 6.30 -2.91 -0.02 1.57 16 33 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.10 2.54 8.01 -2.39 -0.02 2.52 16 36 H 0.06 1.92 7.74 -2.39 -0.02 1.90 16 37 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.41 16.65 7.89 -92.71 -0.73 15.91 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.04 1.51 7.84 -2.39 -0.02 1.49 16 42 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.05 1.49 6.66 -2.39 -0.02 1.47 16 45 H 0.00 -0.14 7.40 -2.39 -0.02 -0.16 16 46 H 0.01 0.73 7.21 -2.39 -0.02 0.71 16 47 H 0.02 1.01 6.44 -2.38 -0.02 0.99 16 48 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -71.22 396.85 4.54 -66.68 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.24 Total: 26.32 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.42 Total: 13.87 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -3.87 Total: -112.36 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.01 Total: -34.99 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.74 Total: -5.09 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -71.22 4.54 -66.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275843829.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.966 kcal (2) G-P(sol) polarization free energy of solvation -71.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds