Wall clock time and date at job start Tue Mar 31 2020 21:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35960 * 116.99968 * 2 1 4 4 C 1.38657 * 120.05962 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.96926 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.09047 * 0.02562 * 5 4 3 7 7 C 1.38256 * 120.12827 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.98331 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47169 * 264.99843 * 8 7 6 10 10 C 1.50699 * 109.47169 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00114 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00050 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00098 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46925 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.46964 * 294.99768 * 14 13 12 16 16 C 1.53003 * 109.46992 * 175.00242 * 14 13 12 17 17 N 1.46502 * 109.47830 * 55.00124 * 14 13 12 18 18 C 1.46502 * 119.99824 * 59.99686 * 17 14 13 19 19 C 1.36938 * 120.00073 * 240.00320 * 17 14 13 20 20 H 1.07996 * 119.99605 * 23.09412 * 19 17 14 21 21 C 1.38812 * 119.99747 * 203.09452 * 19 17 14 22 22 N 1.31610 * 120.00050 * 12.99190 * 21 19 17 23 23 Si 1.86804 * 119.99633 * 192.99201 * 21 19 17 24 24 H 1.48494 * 109.47259 * 60.00257 * 23 21 19 25 25 H 1.48500 * 109.46823 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46948 * 299.99965 * 23 21 19 27 27 C 1.38326 * 120.03044 * 0.02562 * 7 6 5 28 28 F 1.35099 * 120.04931 * 180.27684 * 27 7 6 29 29 H 1.08992 * 109.47261 * 299.99651 * 1 2 3 30 30 H 1.09002 * 109.47228 * 60.00332 * 1 2 3 31 31 H 1.08998 * 109.46777 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.01647 * 0.02562 * 4 3 2 33 33 H 1.07991 * 119.95506 * 180.02562 * 5 4 3 34 34 H 1.08006 * 119.93474 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47282 * 25.00152 * 8 7 6 36 36 H 1.09000 * 109.47207 * 144.99988 * 8 7 6 37 37 H 1.08992 * 109.46903 * 300.00214 * 9 8 7 38 38 H 1.09007 * 109.46654 * 60.00266 * 9 8 7 39 39 H 0.96996 * 119.99842 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.47142 * 299.99916 * 13 12 10 41 41 H 1.09000 * 109.47203 * 60.00241 * 13 12 10 42 42 H 1.08994 * 109.47040 * 299.99692 * 16 14 13 43 43 H 1.08998 * 109.47425 * 59.99556 * 16 14 13 44 44 H 1.09002 * 109.47348 * 179.97438 * 16 14 13 45 45 H 1.08997 * 109.46769 * 95.12776 * 18 17 14 46 46 H 1.09004 * 109.46942 * 215.13499 * 18 17 14 47 47 H 1.09005 * 109.46985 * 335.12803 * 18 17 14 48 48 H 0.97003 * 119.99831 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0016 7 6 4.0579 2.5199 -0.0011 8 6 5.5626 2.6025 -0.0011 9 6 6.0788 2.5043 -1.4381 10 6 7.5836 2.5864 -1.4380 11 8 8.1841 2.7107 -0.3917 12 7 8.2621 2.5206 -2.6006 13 6 9.7249 2.5998 -2.6005 14 6 10.2410 2.5017 -4.0375 15 1 10.0056 1.5171 -4.4416 16 6 11.7569 2.7090 -4.0502 17 7 9.6003 3.5324 -4.8581 18 6 9.7669 4.9477 -4.5181 19 6 8.8458 3.1730 -5.9428 20 1 8.4106 2.1860 -5.9946 21 6 8.6402 4.0774 -6.9756 22 7 9.3650 5.1738 -7.0442 23 14 7.3349 3.7381 -8.2681 24 1 6.0061 3.6327 -7.6139 25 1 7.3141 4.8486 -9.2539 26 1 7.6467 2.4637 -8.9638 27 6 3.4333 1.2856 -0.0005 28 9 4.1713 0.1540 0.0056 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2137 2.3200 -0.0005 33 1 1.3341 4.5115 -0.0011 34 1 3.7915 4.6406 -0.0024 35 1 5.8743 3.5527 0.4329 36 1 5.9716 1.7822 0.5887 37 1 5.7671 1.5543 -1.8719 38 1 5.6698 3.3248 -2.0279 39 1 7.7818 2.4208 -3.4374 40 1 10.0374 3.5497 -2.1667 41 1 10.1332 1.7792 -2.0106 42 1 11.9924 3.6935 -3.6460 43 1 12.2337 1.9421 -3.4397 44 1 12.1247 2.6386 -5.0739 45 1 10.5882 5.3667 -5.0993 46 1 8.8476 5.4869 -4.7468 47 1 9.9886 5.0423 -3.4550 48 1 9.2216 5.8056 -7.7662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275843831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:55 Heat of formation + Delta-G solvation = -81.255353 kcal Electronic energy + Delta-G solvation = -29221.169482 eV Core-core repulsion = 24998.534901 eV Total energy + Delta-G solvation = -4222.634582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.88586 -40.31136 -39.35407 -37.98302 -36.71905 -33.90728 -33.66820 -31.98760 -30.56668 -29.86913 -29.23736 -27.68278 -26.10849 -26.02512 -24.12956 -22.97918 -22.81644 -21.34040 -19.83591 -19.18874 -18.34550 -17.32952 -17.17925 -16.95178 -16.60797 -16.34417 -15.54718 -15.49093 -15.19979 -15.07629 -14.94789 -14.72196 -14.12695 -14.09633 -13.53983 -13.26260 -12.99709 -12.84717 -12.68087 -12.65073 -12.42014 -12.20697 -12.11391 -11.92849 -11.78710 -11.43116 -11.35565 -11.26811 -11.05861 -10.99148 -10.82194 -10.73903 -10.43897 -10.29511 -9.90375 -9.78445 -9.50047 -8.95202 -8.60328 -8.47670 -8.46240 -6.80410 -5.76314 -3.24017 0.83938 0.99435 2.79901 3.05835 3.26381 3.34641 3.40521 3.41189 3.72699 4.01607 4.39664 4.44223 4.51081 4.70756 4.75738 4.86252 4.93328 4.94720 5.06169 5.10033 5.25475 5.36310 5.40304 5.42711 5.60673 5.64396 5.69907 5.75443 5.87173 5.95079 6.03971 6.10286 6.13495 6.20827 6.22304 6.34483 6.37739 6.45358 6.77448 6.85422 6.91339 6.97138 7.08097 7.36403 7.70597 7.76912 8.08313 8.35183 8.69707 9.19098 9.82303 10.32268 11.27738 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.002673 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.536042 B =10472.122634 C =11738.409081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.094 3.906 4 C -0.189 4.189 5 C -0.087 4.087 6 C -0.124 4.124 7 C -0.074 4.074 8 C -0.063 4.063 9 C -0.136 4.136 10 C 0.510 3.490 11 O -0.560 6.560 12 N -0.706 5.706 13 C 0.107 3.893 14 C 0.157 3.843 15 H 0.068 0.932 16 C -0.156 4.156 17 N -0.593 5.593 18 C 0.165 3.835 19 C -0.262 4.262 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.071 3.929 28 F -0.129 7.129 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.410 0.590 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.038 0.962 47 H -0.001 1.001 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.182 -5.356 14.394 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.048 3.952 4 C -0.208 4.208 5 C -0.106 4.106 6 C -0.142 4.142 7 C -0.075 4.075 8 C -0.101 4.101 9 C -0.176 4.176 10 C 0.296 3.704 11 O -0.440 6.440 12 N -0.356 5.356 13 C -0.019 4.019 14 C 0.048 3.952 15 H 0.086 0.914 16 C -0.216 4.216 17 N -0.316 5.316 18 C 0.020 3.980 19 C -0.392 4.392 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.051 3.949 28 F -0.107 7.107 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.246 0.754 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.637 -5.353 14.971 22.300 hybrid contribution -1.076 -0.137 -1.346 1.728 sum -16.713 -5.490 13.625 22.251 Atomic orbital electron populations 1.23107 0.77985 1.04248 1.01452 1.86146 1.21663 1.25853 1.88744 1.18996 0.90759 0.85647 0.99765 1.21116 1.00178 0.91580 1.07910 1.21001 0.94567 0.97190 0.97800 1.20957 0.93483 0.97868 1.01885 1.19893 0.97086 0.90888 0.99612 1.20285 0.88064 1.05092 0.96626 1.21607 0.93022 1.04821 0.98139 1.20469 0.89622 0.76434 0.83912 1.90650 1.70803 1.50832 1.31693 1.45917 1.08093 1.72468 1.09146 1.21928 0.79610 1.00837 0.99553 1.20626 0.91489 0.94007 0.89041 0.91412 1.22186 0.97340 1.00508 1.01560 1.43967 1.57058 1.00846 1.29760 1.20720 1.00428 0.84195 0.92634 1.19150 1.23817 0.99905 0.96291 0.91435 1.25027 0.99118 0.97952 0.97225 1.70059 1.39559 1.12177 1.32929 0.86376 0.81750 0.77222 0.81386 1.21071 1.21708 1.20966 1.16826 0.85784 0.82821 1.09426 1.91501 1.76359 1.48722 1.94139 0.92498 0.92399 0.87987 0.84670 0.84982 0.84541 0.89278 0.89665 0.88982 0.88494 0.75357 0.92194 0.92582 0.93188 0.93997 0.92243 0.95226 0.94287 0.98265 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.38 10.36 -19.61 -0.20 -3.58 16 3 C 0.09 1.06 6.69 -39.18 -0.26 0.79 16 4 C -0.19 -1.63 9.04 -39.45 -0.36 -1.99 16 5 C -0.09 -0.72 10.04 -39.59 -0.40 -1.11 16 6 C -0.12 -1.18 9.68 -39.57 -0.38 -1.56 16 7 C -0.07 -0.85 5.14 -104.58 -0.54 -1.38 16 8 C -0.06 -0.78 4.41 -27.88 -0.12 -0.91 16 9 C -0.14 -1.80 5.68 -27.88 -0.16 -1.96 16 10 C 0.51 8.54 7.83 -10.99 -0.09 8.46 16 11 O -0.56 -10.97 15.98 5.56 0.09 -10.88 16 12 N -0.71 -12.22 5.39 -60.30 -0.32 -12.54 16 13 C 0.11 1.91 4.94 -4.04 -0.02 1.89 16 14 C 0.16 3.04 2.87 -67.93 -0.19 2.84 16 15 H 0.07 1.30 7.87 -51.93 -0.41 0.90 16 16 C -0.16 -2.79 9.19 37.16 0.34 -2.45 16 17 N -0.59 -13.77 2.28 -173.48 -0.40 -14.16 16 18 C 0.16 3.93 8.00 59.85 0.48 4.41 16 19 C -0.26 -6.67 9.31 -15.06 -0.14 -6.81 16 20 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 21 C 0.01 0.16 5.10 -17.43 -0.09 0.07 16 22 N -0.90 -25.47 10.71 55.49 0.59 -24.88 16 23 Si 0.90 20.96 29.57 -169.99 -5.03 15.93 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.07 0.90 7.25 -39.30 -0.28 0.62 16 28 F -0.13 -1.84 16.41 2.25 0.04 -1.81 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 0.80 6.30 -52.49 -0.33 0.47 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.09 1.08 8.01 -51.93 -0.42 0.66 16 36 H 0.08 1.16 7.74 -51.93 -0.40 0.75 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.41 7.17 7.89 -40.82 -0.32 6.84 16 40 H 0.06 1.15 6.86 -51.93 -0.36 0.80 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 46 H 0.04 1.00 7.35 -51.93 -0.38 0.62 16 47 H 0.00 -0.02 6.53 -51.93 -0.34 -0.36 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -31.51 397.00 -7.93 -39.44 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.46 Total: 4.45 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.22 Total: 2.05 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.13 Total: -51.58 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.11 Total: -14.46 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.51 -7.93 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275843831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.818 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds