Wall clock time and date at job start Tue Mar 31 2020 21:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35960 * 116.99968 * 2 1 4 4 C 1.38657 * 120.05962 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.96926 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.09047 * 0.02562 * 5 4 3 7 7 C 1.38256 * 120.12827 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.98331 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.47169 * 264.99843 * 8 7 6 10 10 C 1.50699 * 109.47169 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00114 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00050 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00098 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.46925 * 180.02562 * 13 12 10 15 15 H 1.09004 * 109.46964 * 294.99768 * 14 13 12 16 16 C 1.53003 * 109.46992 * 175.00242 * 14 13 12 17 17 N 1.46502 * 109.47830 * 55.00124 * 14 13 12 18 18 C 1.46502 * 119.99824 * 59.99686 * 17 14 13 19 19 C 1.36938 * 120.00073 * 240.00320 * 17 14 13 20 20 H 1.07996 * 119.99605 * 23.09412 * 19 17 14 21 21 C 1.38812 * 119.99747 * 203.09452 * 19 17 14 22 22 N 1.31610 * 120.00050 * 12.99190 * 21 19 17 23 23 Si 1.86804 * 119.99633 * 192.99201 * 21 19 17 24 24 H 1.48494 * 109.47259 * 60.00257 * 23 21 19 25 25 H 1.48500 * 109.46823 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46948 * 299.99965 * 23 21 19 27 27 C 1.38326 * 120.03044 * 0.02562 * 7 6 5 28 28 F 1.35099 * 120.04931 * 180.27684 * 27 7 6 29 29 H 1.08992 * 109.47261 * 299.99651 * 1 2 3 30 30 H 1.09002 * 109.47228 * 60.00332 * 1 2 3 31 31 H 1.08998 * 109.46777 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.01647 * 0.02562 * 4 3 2 33 33 H 1.07991 * 119.95506 * 180.02562 * 5 4 3 34 34 H 1.08006 * 119.93474 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47282 * 25.00152 * 8 7 6 36 36 H 1.09000 * 109.47207 * 144.99988 * 8 7 6 37 37 H 1.08992 * 109.46903 * 300.00214 * 9 8 7 38 38 H 1.09007 * 109.46654 * 60.00266 * 9 8 7 39 39 H 0.96996 * 119.99842 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.47142 * 299.99916 * 13 12 10 41 41 H 1.09000 * 109.47203 * 60.00241 * 13 12 10 42 42 H 1.08994 * 109.47040 * 299.99692 * 16 14 13 43 43 H 1.08998 * 109.47425 * 59.99556 * 16 14 13 44 44 H 1.09002 * 109.47348 * 179.97438 * 16 14 13 45 45 H 1.08997 * 109.46769 * 95.12776 * 18 17 14 46 46 H 1.09004 * 109.46942 * 215.13499 * 18 17 14 47 47 H 1.09005 * 109.46985 * 335.12803 * 18 17 14 48 48 H 0.97003 * 119.99831 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2923 2.3751 -0.0005 5 6 1.9216 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0016 7 6 4.0579 2.5199 -0.0011 8 6 5.5626 2.6025 -0.0011 9 6 6.0788 2.5043 -1.4381 10 6 7.5836 2.5864 -1.4380 11 8 8.1841 2.7107 -0.3917 12 7 8.2621 2.5206 -2.6006 13 6 9.7249 2.5998 -2.6005 14 6 10.2410 2.5017 -4.0375 15 1 10.0056 1.5171 -4.4416 16 6 11.7569 2.7090 -4.0502 17 7 9.6003 3.5324 -4.8581 18 6 9.7669 4.9477 -4.5181 19 6 8.8458 3.1730 -5.9428 20 1 8.4106 2.1860 -5.9946 21 6 8.6402 4.0774 -6.9756 22 7 9.3650 5.1738 -7.0442 23 14 7.3349 3.7381 -8.2681 24 1 6.0061 3.6327 -7.6139 25 1 7.3141 4.8486 -9.2539 26 1 7.6467 2.4637 -8.9638 27 6 3.4333 1.2856 -0.0005 28 9 4.1713 0.1540 0.0056 29 1 -0.3633 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2137 2.3200 -0.0005 33 1 1.3341 4.5115 -0.0011 34 1 3.7915 4.6406 -0.0024 35 1 5.8743 3.5527 0.4329 36 1 5.9716 1.7822 0.5887 37 1 5.7671 1.5543 -1.8719 38 1 5.6698 3.3248 -2.0279 39 1 7.7818 2.4208 -3.4374 40 1 10.0374 3.5497 -2.1667 41 1 10.1332 1.7792 -2.0106 42 1 11.9924 3.6935 -3.6460 43 1 12.2337 1.9421 -3.4397 44 1 12.1247 2.6386 -5.0739 45 1 10.5882 5.3667 -5.0993 46 1 8.8476 5.4869 -4.7468 47 1 9.9886 5.0423 -3.4550 48 1 9.2216 5.8056 -7.7662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275843831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:54 Heat of formation + Delta-G solvation = -99.587917 kcal Electronic energy + Delta-G solvation = -29221.964442 eV Core-core repulsion = 24998.534901 eV Total energy + Delta-G solvation = -4223.429541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.83877 -41.07011 -40.67380 -38.80080 -38.34137 -35.39954 -34.78804 -33.68933 -31.33824 -31.19898 -30.56831 -28.24864 -27.99906 -27.36145 -25.33571 -24.72215 -23.55536 -22.18916 -21.24045 -20.77024 -19.11211 -18.85047 -18.14071 -18.04889 -17.75363 -17.19252 -17.14704 -16.87400 -16.45638 -16.04568 -15.84885 -15.70782 -15.48464 -15.23500 -14.76123 -14.63993 -14.46049 -14.18859 -13.93399 -13.72755 -13.64513 -13.39332 -13.08011 -13.00300 -12.93064 -12.84020 -12.61826 -12.51725 -12.45852 -12.30465 -12.10974 -12.08526 -11.98017 -11.94819 -11.77615 -11.50182 -10.87215 -10.59261 -9.91396 -9.75925 -9.22571 -8.75639 -7.77331 -5.26046 0.08132 0.25388 1.51686 1.52476 1.58596 1.71162 2.17302 2.35644 2.54246 2.60089 3.25920 3.37212 3.55662 3.66549 3.84150 3.91783 4.03492 4.05771 4.07869 4.25279 4.28568 4.37752 4.38438 4.39036 4.46973 4.60763 4.62322 4.71906 4.74396 4.77607 4.86383 4.95368 4.99681 5.04949 5.06762 5.14504 5.24067 5.31745 5.37476 5.43057 5.44650 5.62418 5.67518 5.70695 5.76001 6.30342 6.36950 6.69058 7.19131 7.32699 7.90548 8.36580 9.25709 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.002673 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.536042 B =10472.122634 C =11738.409081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.083 3.917 4 C -0.183 4.183 5 C -0.078 4.078 6 C -0.128 4.128 7 C -0.082 4.082 8 C -0.056 4.056 9 C -0.127 4.127 10 C 0.509 3.491 11 O -0.589 6.589 12 N -0.708 5.708 13 C 0.116 3.884 14 C 0.156 3.844 15 H 0.072 0.928 16 C -0.149 4.149 17 N -0.602 5.602 18 C 0.185 3.815 19 C -0.258 4.258 20 H 0.079 0.921 21 C -0.050 4.050 22 N -0.938 5.938 23 Si 0.964 3.036 24 H -0.275 1.275 25 H -0.302 1.302 26 H -0.278 1.278 27 C 0.035 3.965 28 F -0.149 7.149 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.410 0.590 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.040 0.960 45 H 0.001 0.999 46 H 0.014 0.986 47 H 0.019 0.981 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.472 -5.615 14.912 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.037 3.963 4 C -0.201 4.201 5 C -0.096 4.096 6 C -0.146 4.146 7 C -0.083 4.083 8 C -0.094 4.094 9 C -0.166 4.166 10 C 0.297 3.703 11 O -0.471 6.471 12 N -0.358 5.358 13 C -0.009 4.009 14 C 0.049 3.951 15 H 0.091 0.909 16 C -0.208 4.208 17 N -0.325 5.325 18 C 0.040 3.960 19 C -0.388 4.388 20 H 0.096 0.904 21 C -0.246 4.246 22 N -0.585 5.585 23 Si 0.793 3.207 24 H -0.201 1.201 25 H -0.229 1.229 26 H -0.204 1.204 27 C 0.016 3.984 28 F -0.128 7.128 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.247 0.753 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.032 0.968 47 H 0.038 0.962 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.939 -5.652 15.509 24.378 hybrid contribution -0.407 -0.106 -1.428 1.489 sum -18.346 -5.758 14.081 23.833 Atomic orbital electron populations 1.23424 0.75665 1.05785 1.02810 1.86110 1.24174 1.26188 1.88782 1.19204 0.90466 0.86708 0.99945 1.21501 1.01598 0.90746 1.06273 1.21423 0.94197 0.98326 0.95683 1.21231 0.94308 0.97718 1.01371 1.19820 0.96317 0.91358 1.00839 1.20153 0.89168 1.04325 0.95706 1.21585 0.90303 1.05651 0.99097 1.21016 0.90929 0.75282 0.83103 1.90634 1.71724 1.52129 1.32610 1.45961 1.07891 1.72529 1.09402 1.21748 0.80178 1.00704 0.98317 1.20779 0.92238 0.92973 0.89105 0.90946 1.22074 0.96242 1.01420 1.01080 1.44106 1.57464 1.01240 1.29702 1.20376 0.98023 0.84480 0.93160 1.19531 1.23118 0.99960 0.96229 0.90360 1.25741 1.01215 0.98148 0.99455 1.70232 1.41388 1.13240 1.33602 0.85394 0.79838 0.76578 0.78906 1.20079 1.22896 1.20434 1.17223 0.86775 0.82628 1.11798 1.91434 1.76967 1.49807 1.94580 0.90893 0.91122 0.86589 0.81683 0.81615 0.82943 0.89150 0.91544 0.88367 0.87076 0.75344 0.93438 0.91200 0.93724 0.90624 0.94033 0.98022 0.96767 0.96242 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.10 10.36 -93.10 -0.96 -8.06 16 3 C 0.08 1.77 6.69 22.53 0.15 1.92 16 4 C -0.18 -2.63 9.04 22.36 0.20 -2.43 16 5 C -0.08 -1.02 10.04 22.26 0.22 -0.80 16 6 C -0.13 -2.16 9.68 22.28 0.22 -1.94 16 7 C -0.08 -1.84 5.14 -19.84 -0.10 -1.94 16 8 C -0.06 -1.39 4.41 29.85 0.13 -1.25 16 9 C -0.13 -3.27 5.68 29.85 0.17 -3.10 16 10 C 0.51 16.77 7.83 87.66 0.69 17.46 16 11 O -0.59 -22.95 15.98 -3.03 -0.05 -23.00 16 12 N -0.71 -23.83 5.39 -463.07 -2.49 -26.33 16 13 C 0.12 4.03 4.94 86.38 0.43 4.46 16 14 C 0.16 5.85 2.87 44.99 0.13 5.98 16 15 H 0.07 2.66 7.87 -2.39 -0.02 2.64 16 16 C -0.15 -5.12 9.19 71.98 0.66 -4.45 16 17 N -0.60 -27.71 2.28 -702.76 -1.61 -29.31 16 18 C 0.18 8.89 8.00 127.77 1.02 9.92 16 19 C -0.26 -12.99 9.31 84.03 0.78 -12.21 16 20 H 0.08 3.72 7.82 -2.91 -0.02 3.69 16 21 C -0.05 -2.67 5.10 84.86 0.43 -2.24 16 22 N -0.94 -53.88 10.71 21.65 0.23 -53.65 16 23 Si 0.96 43.02 29.57 68.60 2.03 45.04 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 27 C 0.04 0.90 7.25 22.45 0.16 1.06 16 28 F -0.15 -4.46 16.41 44.97 0.74 -3.72 16 29 H 0.07 0.47 7.66 -2.39 -0.02 0.46 16 30 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 31 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.17 1.29 6.30 -2.91 -0.02 1.27 16 33 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.09 2.17 8.01 -2.39 -0.02 2.15 16 36 H 0.07 1.87 7.74 -2.39 -0.02 1.86 16 37 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.41 13.89 7.89 -92.71 -0.73 13.16 16 40 H 0.05 1.77 6.86 -2.39 -0.02 1.76 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.04 1.57 7.67 -2.39 -0.02 1.55 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.00 0.08 7.34 -2.39 -0.02 0.06 16 46 H 0.01 0.72 7.35 -2.38 -0.02 0.70 16 47 H 0.02 0.83 6.53 -2.38 -0.02 0.82 16 48 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -69.17 397.00 4.53 -64.64 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.24 Total: 22.68 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: 6.41 Total: 11.70 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -3.87 Total: -109.29 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -1.01 Total: -31.06 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.74 Total: -3.72 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.17 4.53 -64.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275843831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.943 kcal (2) G-P(sol) polarization free energy of solvation -69.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds