Wall clock time and date at job start Tue Mar 31 2020 21:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46974 * 2 1 4 4 C 1.52998 * 109.47665 * 239.99665 * 2 1 3 5 5 N 1.46500 * 109.47530 * 184.99900 * 4 2 1 6 6 C 1.34777 * 120.00023 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99993 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00146 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46834 * 59.99820 * 8 6 5 10 10 C 1.53001 * 109.46891 * 300.00110 * 8 6 5 11 11 O 1.42899 * 109.47388 * 179.97438 * 8 6 5 12 12 C 1.42897 * 114.00371 * 210.00080 * 11 8 6 13 13 C 1.50692 * 109.47193 * 180.02562 * 12 11 8 14 14 C 1.38252 * 119.97257 * 269.72240 * 13 12 11 15 15 C 1.38196 * 120.02540 * 179.72757 * 14 13 12 16 16 C 1.38458 * 119.97224 * 0.57139 * 15 14 13 17 17 F 1.35110 * 120.02835 * 179.68418 * 16 15 14 18 18 C 1.38468 * 119.95215 * 359.70431 * 16 15 14 19 19 C 1.38196 * 119.96848 * 0.02562 * 18 16 15 20 20 N 1.46503 * 109.47378 * 119.99434 * 2 1 3 21 21 C 1.46504 * 119.99851 * 60.00177 * 20 2 1 22 22 C 1.36932 * 120.00506 * 240.00430 * 20 2 1 23 23 H 1.08005 * 119.99684 * 23.10961 * 22 20 2 24 24 C 1.38806 * 120.00164 * 203.11487 * 22 20 2 25 25 N 1.31618 * 120.00310 * 11.69767 * 24 22 20 26 26 Si 1.86802 * 120.00027 * 191.69503 * 24 22 20 27 27 H 1.48502 * 109.47187 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47245 * 120.00051 * 26 24 22 29 29 H 1.48502 * 109.47444 * 240.00149 * 26 24 22 30 30 H 1.09001 * 109.46729 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46749 * 60.00455 * 1 2 3 32 32 H 1.08994 * 109.46920 * 300.00185 * 1 2 3 33 33 H 1.09002 * 109.47184 * 305.00245 * 4 2 1 34 34 H 1.09003 * 109.46640 * 64.99645 * 4 2 1 35 35 H 0.96997 * 119.99619 * 0.02562 * 5 4 2 36 36 H 1.08998 * 109.46712 * 299.99417 * 10 8 6 37 37 H 1.09001 * 109.47233 * 59.99940 * 10 8 6 38 38 H 1.09007 * 109.46988 * 179.97438 * 10 8 6 39 39 H 1.08997 * 109.46898 * 300.00506 * 12 11 8 40 40 H 1.09005 * 109.46984 * 59.99670 * 12 11 8 41 41 H 1.07999 * 119.98384 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.01465 * 180.25621 * 15 14 13 43 43 H 1.07997 * 120.01368 * 179.97438 * 18 16 15 44 44 H 1.08004 * 119.98697 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.47261 * 93.93178 * 21 20 2 46 46 H 1.09000 * 109.47344 * 213.93210 * 21 20 2 47 47 H 1.09007 * 109.46943 * 333.93628 * 21 20 2 48 48 H 0.96998 * 120.00579 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5002 -0.8264 -1.1904 6 6 4.1732 -1.4283 -2.1910 7 8 3.5702 -1.8834 -3.1398 8 6 5.6751 -1.5369 -2.1304 9 1 5.9630 -2.1005 -1.2429 10 6 6.2855 -0.1355 -2.0649 11 8 6.1515 -2.2105 -3.2971 12 6 7.3531 -2.9551 -3.0886 13 6 7.7624 -3.6198 -4.3776 14 6 7.3065 -4.8908 -4.6743 15 6 7.6766 -5.4992 -5.8587 16 6 8.5137 -4.8399 -6.7429 17 9 8.8814 -5.4362 -7.8982 18 6 8.9743 -3.5692 -6.4420 19 6 8.5983 -2.9607 -5.2595 20 7 2.0184 -0.6905 1.1962 21 6 1.6645 -2.0931 1.4282 22 6 2.8056 -0.0250 2.0976 23 1 2.7707 1.0531 2.1524 24 6 3.6485 -0.7359 2.9407 25 7 3.8673 -2.0159 2.7262 26 14 4.4724 0.1241 4.3799 27 1 4.0651 1.5520 4.4023 28 1 4.0595 -0.5279 5.6485 29 1 5.9473 0.0319 4.2332 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3633 0.5138 0.8899 33 1 1.6055 -1.7199 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.9824 -0.4627 -0.4315 36 1 5.9975 0.4280 -2.9524 37 1 5.9221 0.3779 -1.1747 38 1 7.3718 -0.2140 -2.0206 39 1 8.1450 -2.2822 -2.7597 40 1 7.1820 -3.7149 -2.3259 41 1 6.6578 -5.4069 -3.9821 42 1 7.3171 -6.4904 -6.0923 43 1 9.6276 -3.0543 -7.1307 44 1 8.9570 -1.9694 -5.0247 45 1 2.4508 -2.7364 1.0331 46 1 1.5555 -2.2681 2.4985 47 1 0.7239 -2.3184 0.9254 48 1 4.4567 -2.5126 3.3152 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275988485.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:27 Heat of formation + Delta-G solvation = -82.212673 kcal Electronic energy + Delta-G solvation = -29277.656572 eV Core-core repulsion = 25054.980478 eV Total energy + Delta-G solvation = -4222.676094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.11041 -39.75439 -39.18919 -37.47172 -36.51532 -33.70598 -32.57246 -31.90159 -31.37885 -30.50355 -29.28309 -26.17522 -26.08039 -25.83437 -23.61011 -23.28636 -22.90041 -21.67951 -19.76849 -19.32311 -17.92204 -17.09130 -16.94134 -16.91984 -16.63283 -15.79576 -15.73374 -15.44456 -15.08514 -14.95592 -14.55581 -14.34865 -13.95772 -13.77113 -13.62312 -13.37303 -13.02574 -12.87030 -12.78051 -12.43330 -12.42601 -12.23557 -12.11912 -12.01802 -11.67384 -11.54930 -11.24044 -11.12856 -11.04564 -10.86899 -10.74185 -10.45168 -10.31878 -9.92224 -9.84268 -9.82214 -9.33418 -9.12385 -8.85482 -8.66405 -8.36346 -6.86788 -5.82566 -3.30583 0.82779 1.01213 3.06554 3.13731 3.28203 3.37953 3.38181 3.55165 4.01930 4.19913 4.38523 4.45543 4.62893 4.74614 4.91128 5.01592 5.03157 5.14775 5.26573 5.29986 5.31070 5.35959 5.38330 5.58115 5.67883 5.71779 5.74965 5.78237 5.87264 5.93571 5.99184 6.06920 6.13716 6.16435 6.29806 6.34079 6.37772 6.63663 6.66881 6.78150 6.87764 7.04869 7.17826 7.35089 7.67497 7.73259 8.20662 8.28975 8.81322 9.13237 9.76293 10.26422 11.20355 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015290 B = 0.002409 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.842437 B =11618.554513 C =12481.346771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.110 3.890 5 N -0.697 5.697 6 C 0.512 3.488 7 O -0.543 6.543 8 C 0.070 3.930 9 H 0.091 0.909 10 C -0.169 4.169 11 O -0.351 6.351 12 C 0.099 3.901 13 C -0.094 4.094 14 C -0.065 4.065 15 C -0.156 4.156 16 C 0.099 3.901 17 F -0.142 7.142 18 C -0.158 4.158 19 C -0.069 4.069 20 N -0.594 5.594 21 C 0.163 3.837 22 C -0.258 4.258 23 H 0.068 0.932 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.414 0.586 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.028 0.972 46 H 0.042 0.958 47 H -0.002 1.002 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 -1.335 -12.404 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.350 5.350 6 C 0.297 3.703 7 O -0.421 6.421 8 C 0.009 3.991 9 H 0.109 0.891 10 C -0.226 4.226 11 O -0.270 6.270 12 C 0.022 3.978 13 C -0.094 4.094 14 C -0.084 4.084 15 C -0.175 4.175 16 C 0.080 3.920 17 F -0.120 7.120 18 C -0.177 4.177 19 C -0.087 4.087 20 N -0.317 5.317 21 C 0.019 3.981 22 C -0.388 4.388 23 H 0.086 0.914 24 C -0.194 4.194 25 N -0.547 5.547 26 Si 0.731 3.269 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.251 0.749 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.017 0.983 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.080 -1.794 -13.177 15.561 hybrid contribution 0.917 0.291 1.295 1.613 sum 8.997 -1.502 -11.882 14.980 Atomic orbital electron populations 1.22168 0.97482 1.01479 1.00662 1.20653 0.92607 0.95875 0.85939 0.91329 1.21930 0.79832 1.00988 0.98910 1.45757 1.08081 1.58280 1.22874 1.20159 0.88705 0.78532 0.82946 1.90660 1.69906 1.47801 1.33740 1.21918 0.92588 0.94809 0.89756 0.89134 1.22221 1.01314 0.95590 1.03508 1.88088 1.40614 1.65912 1.32358 1.21389 0.87849 0.94662 0.93896 1.19670 0.98321 0.94630 0.96782 1.21011 0.97056 0.94408 0.95879 1.21149 0.99964 1.01564 0.94840 1.17774 0.98447 0.92563 0.83190 1.91498 1.90130 1.83599 1.46810 1.21117 1.03223 0.94329 0.99049 1.20939 0.96048 0.99406 0.92317 1.43955 1.57863 1.09677 1.20247 1.20753 0.93953 0.84480 0.98952 1.19260 1.15864 0.91156 1.12507 0.91430 1.25010 0.97959 0.96130 1.00307 1.70086 1.38988 1.07342 1.38242 0.86251 0.78904 0.78917 0.82820 1.20400 1.21728 1.21771 0.92943 0.93535 0.92437 0.92439 0.92871 0.74876 0.91421 0.90385 0.91635 0.92050 0.91865 0.84597 0.84555 0.84646 0.84786 0.95339 0.93943 0.98308 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.18 37.16 0.34 -2.22 16 2 C 0.16 2.92 2.87 -67.93 -0.19 2.73 16 3 H 0.07 1.25 7.87 -51.93 -0.41 0.84 16 4 C 0.11 2.01 4.97 -4.04 -0.02 1.99 16 5 N -0.70 -12.92 5.28 -60.29 -0.32 -13.24 16 6 C 0.51 9.64 7.23 -10.99 -0.08 9.56 16 7 O -0.54 -12.10 16.50 -14.36 -0.24 -12.34 16 8 C 0.07 1.07 3.14 -27.88 -0.09 0.99 16 9 H 0.09 1.33 7.79 -51.93 -0.40 0.92 16 10 C -0.17 -2.10 9.42 37.16 0.35 -1.75 16 11 O -0.35 -5.43 9.50 -55.14 -0.52 -5.96 16 12 C 0.10 1.15 5.87 36.00 0.21 1.36 16 13 C -0.09 -1.06 5.51 -104.62 -0.58 -1.63 16 14 C -0.07 -0.71 9.70 -39.59 -0.38 -1.10 16 15 C -0.16 -1.61 10.03 -39.52 -0.40 -2.01 16 16 C 0.10 1.07 7.30 -39.42 -0.29 0.78 16 17 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 18 C -0.16 -1.54 10.03 -39.51 -0.40 -1.94 16 19 C -0.07 -0.69 9.70 -39.60 -0.38 -1.07 16 20 N -0.59 -13.24 2.29 -173.48 -0.40 -13.64 16 21 C 0.16 3.77 8.11 59.85 0.49 4.26 16 22 C -0.26 -6.29 9.32 -15.06 -0.14 -6.43 16 23 H 0.07 1.63 7.82 -52.48 -0.41 1.22 16 24 C 0.00 0.12 5.12 -17.43 -0.09 0.03 16 25 N -0.90 -23.77 10.65 55.49 0.59 -23.18 16 26 Si 0.90 20.12 29.57 -169.99 -5.03 15.10 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 30 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.14 7.84 -51.93 -0.41 0.74 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.41 7.90 7.31 -40.82 -0.30 7.60 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.97 7.56 -51.93 -0.39 0.58 16 38 H 0.06 0.67 7.87 -51.92 -0.41 0.26 16 39 H 0.06 0.58 7.81 -51.93 -0.41 0.18 16 40 H 0.06 0.69 8.03 -51.93 -0.42 0.28 16 41 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 45 H 0.03 0.72 7.41 -51.93 -0.38 0.33 16 46 H 0.04 1.07 7.23 -51.93 -0.38 0.69 16 47 H 0.00 -0.03 6.43 -51.92 -0.33 -0.37 16 48 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -29.85 400.61 -8.99 -38.84 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.51 Total: 6.38 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.65 Total: 3.54 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.12 Total: -50.06 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.76 Total: -18.29 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.85 -8.99 -38.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275988485.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.373 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds