Wall clock time and date at job start Tue Mar 31 2020 21:55:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30814 * 1
3 3 Si 1.86797 * 120.00475 * 2 1
4 4 H 1.48505 * 109.46786 * 265.15327 * 3 2 1
5 5 H 1.48497 * 109.47035 * 25.14921 * 3 2 1
6 6 H 1.48497 * 109.47380 * 145.15566 * 3 2 1
7 7 C 1.39949 * 119.99883 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00133 * 163.33996 * 7 2 1
9 9 C 1.41394 * 119.99809 * 343.34995 * 7 2 1
10 10 C 1.40730 * 120.24657 * 334.12798 * 9 7 2
11 11 C 1.37598 * 119.74815 * 179.69808 * 10 9 7
12 12 C 1.38658 * 120.24494 * 0.60755 * 11 10 9
13 13 C 1.38612 * 120.50351 * 359.66610 * 12 11 10
14 14 C 1.37640 * 120.24559 * 0.02932 * 13 12 11
15 15 C 1.50698 * 120.12685 * 180.02562 * 14 13 12
16 16 N 1.46903 * 109.47055 * 259.97730 * 15 14 13
17 17 C 1.47727 * 111.00120 * 73.61561 * 16 15 14
18 18 C 1.52265 * 87.55913 * 137.73452 * 17 16 15
19 19 C 1.52686 * 122.14225 * 99.93599 * 18 17 16
20 20 N 1.48212 * 85.72423 * 104.12924 * 19 18 17
21 21 C 1.46901 * 111.00519 * 136.73868 * 20 19 18
22 22 C 1.50702 * 109.46800 * 90.28125 * 21 20 19
23 23 C 1.39865 * 126.04288 * 269.69000 * 22 21 20
24 24 N 1.30831 * 108.20550 * 179.81997 * 23 22 21
25 25 N 1.40083 * 108.20378 * 0.44291 * 24 23 22
26 26 H 0.97000 * 126.04163 * 179.73799 * 25 24 23
27 27 C 1.34946 * 107.92744 * 359.71665 * 25 24 23
28 28 C 1.48219 * 91.07191 * 23.71483 * 20 19 18
29 29 C 1.47729 * 110.99989 * 169.99867 * 16 15 14
30 30 H 0.97006 * 120.00124 * 0.02562 * 1 2 3
31 31 H 1.08004 * 120.12473 * 0.02562 * 10 9 7
32 32 H 1.07997 * 119.87851 * 180.31738 * 11 10 9
33 33 H 1.08002 * 119.74719 * 179.69582 * 12 11 10
34 34 H 1.08000 * 119.87576 * 180.02562 * 13 12 11
35 35 H 1.08999 * 109.46988 * 19.97674 * 15 14 13
36 36 H 1.08997 * 109.47257 * 139.97545 * 15 14 13
37 37 H 1.09003 * 113.53050 * 252.40802 * 17 16 15
38 38 H 1.08992 * 113.53768 * 23.05573 * 17 16 15
39 39 H 1.09003 * 113.83448 * 218.32810 * 19 18 17
40 40 H 1.09007 * 113.83353 * 349.92475 * 19 18 17
41 41 H 1.08994 * 109.47028 * 210.28443 * 21 20 19
42 42 H 1.08999 * 109.46702 * 330.28288 * 21 20 19
43 43 H 1.08008 * 125.89852 * 0.02562 * 23 22 21
44 44 H 1.07996 * 126.13347 * 180.02562 * 27 25 24
45 45 H 1.08997 * 113.83482 * 222.08773 * 28 20 19
46 46 H 1.08995 * 113.82894 * 90.48151 * 28 20 19
47 47 H 1.08995 * 113.53604 * 336.93506 * 29 16 15
48 48 H 1.09000 * 113.53747 * 107.52599 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3081 0.0000 0.0000
3 14 2.2423 1.6176 0.0000
4 1 2.5922 1.9871 -1.3951
5 1 1.3923 2.6800 0.5950
6 1 3.4848 1.4718 0.7999
7 6 2.0079 -1.2120 0.0005
8 1 3.0539 -1.2318 -0.2676
9 6 1.3453 -2.4106 0.3519
10 6 0.2173 -2.3768 1.1928
11 6 -0.4233 -3.5489 1.5232
12 6 0.0460 -4.7613 1.0411
13 6 1.1595 -4.8071 0.2168
14 6 1.8124 -3.6466 -0.1317
15 6 3.0223 -3.6995 -1.0284
16 7 4.2406 -3.6013 -0.2134
17 6 4.4909 -4.8599 0.5184
18 6 5.9610 -4.7030 0.1545
19 6 6.9868 -4.1473 1.1395
20 7 7.4315 -5.5522 1.2978
21 6 8.8977 -5.6429 1.3050
22 6 9.4016 -5.5208 2.7200
23 6 9.7524 -4.3325 3.3690
24 7 10.1383 -4.6287 4.5835
25 7 10.0548 -6.0179 4.7427
26 1 10.2830 -6.5154 5.5435
27 6 9.6002 -6.5421 3.5853
28 6 6.8840 -5.9047 -0.0337
29 6 5.4432 -3.8871 -1.0223
30 1 -0.4850 0.8401 -0.0004
31 1 -0.1473 -1.4340 1.5730
32 1 -1.2922 -3.5249 2.1641
33 1 -0.4601 -5.6769 1.3095
34 1 1.5162 -5.7570 -0.1532
35 1 3.0271 -4.6414 -1.5770
36 1 2.9888 -2.8688 -1.7333
37 1 4.2971 -4.7870 1.5886
38 1 4.0198 -5.7301 0.0615
39 1 7.7324 -3.4985 0.6798
40 1 6.5461 -3.7205 2.0406
41 1 9.2043 -6.6037 0.8917
42 1 9.3144 -4.8375 0.7001
43 1 9.7089 -3.3412 2.9424
44 1 9.4256 -7.5889 3.3854
45 1 6.3623 -6.8615 -0.0562
46 1 7.5984 -5.7880 -0.8485
47 1 5.2385 -4.4852 -1.9101
48 1 6.0430 -3.0028 -1.2378
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001276242123.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:55:39
Heat of formation + Delta-G solvation = 176.049171 kcal
Electronic energy + Delta-G solvation = -28455.387280 eV
Core-core repulsion = 24706.972235 eV
Total energy + Delta-G solvation = -3748.415044 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.180 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.42450 -40.83924 -38.05864 -36.89989 -33.55040 -32.64316 -31.47551 -30.92727
-29.39990 -28.22407 -26.25773 -26.22557 -25.68396 -24.99446 -23.16870 -22.12713
-21.18706 -20.86601 -20.15281 -19.38108 -18.20420 -17.73076 -17.07164 -15.86345
-15.66772 -15.45028 -15.18357 -14.76763 -14.66897 -14.49252 -14.23578 -14.09425
-13.81354 -13.43196 -13.10142 -12.96208 -12.79117 -12.56116 -12.30733 -12.06952
-11.69144 -11.54386 -11.43857 -11.20769 -10.99785 -10.93457 -10.68124 -10.58978
-10.49498 -10.39457 -10.18059 -10.11303 -9.82061 -9.42326 -9.21790 -9.07460
-8.83791 -8.62159 -8.20895 -7.30046 -7.24135 -6.67176 -4.24301 1.73126
2.57809 2.73126 2.84969 3.03226 3.12954 3.18386 3.32241 3.94143
4.01449 4.32053 4.49492 4.56206 4.71160 4.72267 4.87284 4.99911
5.13174 5.17643 5.37158 5.43559 5.50990 5.54221 5.63586 5.69870
5.80917 5.86419 5.88199 5.92779 5.97671 6.03105 6.15203 6.23077
6.31256 6.34062 6.38304 6.43498 6.50307 6.57524 6.90374 6.97811
7.05135 7.06728 7.20256 7.34631 7.45777 7.46941 7.66636 7.74830
7.98755 8.15558 8.21588 8.39607 8.75483 9.01862 9.08996 10.27607
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.011869 B = 0.002729 C = 0.002525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2358.597057 B =10258.077818 C =11086.970622
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.798 5.798
2 C 0.074 3.926
3 Si 0.904 3.096
4 H -0.271 1.271
5 H -0.279 1.279
6 H -0.260 1.260
7 C -0.446 4.446
8 H 0.089 0.911
9 C 0.130 3.870
10 C -0.164 4.164
11 C -0.106 4.106
12 C -0.247 4.247
13 C -0.085 4.085
14 C -0.195 4.195
15 C 0.092 3.908
16 N -0.448 5.448
17 C 0.042 3.958
18 C -0.119 4.119
19 C 0.041 3.959
20 N -0.472 5.472
21 C 0.097 3.903
22 C -0.223 4.223
23 C 0.060 3.940
24 N -0.299 5.299
25 N -0.481 5.481
26 H 0.438 0.562
27 C 0.072 3.928
28 C 0.015 3.985
29 C 0.005 3.995
30 H 0.278 0.722
31 H 0.116 0.884
32 H 0.084 0.916
33 H 0.083 0.917
34 H 0.081 0.919
35 H 0.022 0.978
36 H 0.078 0.922
37 H 0.083 0.917
38 H 0.065 0.935
39 H 0.071 0.929
40 H 0.093 0.907
41 H 0.075 0.925
42 H 0.050 0.950
43 H 0.180 0.820
44 H 0.174 0.826
45 H 0.088 0.912
46 H 0.070 0.930
47 H 0.064 0.936
48 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.416 -10.666 1.021 20.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.423 5.423
2 C -0.143 4.143
3 Si 0.728 3.272
4 H -0.196 1.196
5 H -0.204 1.204
6 H -0.184 1.184
7 C -0.476 4.476
8 H 0.107 0.893
9 C 0.127 3.873
10 C -0.184 4.184
11 C -0.125 4.125
12 C -0.266 4.266
13 C -0.104 4.104
14 C -0.197 4.197
15 C -0.035 4.035
16 N -0.170 5.170
17 C -0.087 4.087
18 C -0.120 4.120
19 C -0.087 4.087
20 N -0.195 5.195
21 C -0.032 4.032
22 C -0.235 4.235
23 C -0.127 4.127
24 N -0.121 5.121
25 N -0.189 5.189
26 H 0.281 0.719
27 C -0.076 4.076
28 C -0.114 4.114
29 C -0.124 4.124
30 H 0.089 0.911
31 H 0.133 0.867
32 H 0.102 0.898
33 H 0.101 0.899
34 H 0.099 0.901
35 H 0.040 0.960
36 H 0.096 0.904
37 H 0.102 0.898
38 H 0.083 0.917
39 H 0.090 0.910
40 H 0.111 0.889
41 H 0.093 0.907
42 H 0.069 0.931
43 H 0.197 0.803
44 H 0.191 0.809
45 H 0.106 0.894
46 H 0.088 0.912
47 H 0.082 0.918
48 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges 17.364 -9.749 3.013 20.141
hybrid contribution 0.235 -0.180 -1.551 1.579
sum 17.599 -9.929 1.461 20.260
Atomic orbital electron populations
1.69836 1.07609 1.29009 1.35891 1.25962 0.94640 1.01330 0.92416
0.86400 0.80718 0.80766 0.79280 1.19609 1.20428 1.18369 1.19703
0.98135 0.90487 1.39259 0.89264 1.17374 0.90413 0.91530 0.87974
1.21334 0.99286 0.96602 1.01147 1.20665 0.98511 0.93499 0.99807
1.20276 1.01762 0.96051 1.08517 1.20334 0.96146 0.95527 0.98354
1.19385 1.00068 0.93694 1.06527 1.21167 0.89019 0.98805 0.94522
1.69153 1.00910 1.30703 1.16242 1.23253 0.90942 0.93028 1.01463
1.22872 0.95441 0.96112 0.97561 1.23568 0.95617 0.90493 0.99014
1.68623 1.08966 1.14240 1.27640 1.20862 0.89462 1.01377 0.91512
1.19895 1.12773 0.92122 0.98719 1.23810 0.97984 0.99562 0.91349
1.77329 1.24795 0.90781 1.19219 1.46287 1.53490 1.05888 1.13211
0.71898 1.22344 0.98785 0.99815 0.86668 1.23750 0.96991 0.99294
0.91374 1.23639 0.94884 0.98752 0.95146 0.91101 0.86660 0.89774
0.89896 0.90111 0.96000 0.90413 0.89824 0.91710 0.91050 0.88886
0.90673 0.93137 0.80327 0.80865 0.89411 0.91207 0.91768 0.90170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -20.79 10.98 55.55 0.61 -20.18 16
2 C 0.07 1.85 5.15 -17.34 -0.09 1.76 16
3 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16
4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16
5 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16
6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16
7 C -0.45 -11.67 8.19 -37.74 -0.31 -11.98 16
8 H 0.09 2.29 6.84 -52.49 -0.36 1.93 16
9 C 0.13 3.43 5.56 -106.83 -0.59 2.83 16
10 C -0.16 -4.35 8.69 -38.87 -0.34 -4.69 16
11 C -0.11 -2.57 10.02 -39.66 -0.40 -2.97 16
12 C -0.25 -5.66 10.05 -39.29 -0.39 -6.06 16
13 C -0.08 -1.91 9.54 -39.66 -0.38 -2.28 16
14 C -0.19 -4.60 5.10 -103.91 -0.53 -5.13 16
15 C 0.09 1.85 4.14 -4.98 -0.02 1.83 16
16 N -0.45 -8.13 6.13 -246.02 -1.51 -9.64 16
17 C 0.04 0.68 7.03 -6.68 -0.05 0.63 16
18 C -0.12 -1.52 1.46 -155.81 -0.23 -1.75 16
19 C 0.04 0.50 7.78 -3.26 -0.03 0.48 16
20 N -0.47 -5.22 6.14 -246.79 -1.51 -6.74 16
21 C 0.10 0.87 5.28 -4.97 -0.03 0.85 16
22 C -0.22 -2.20 5.66 -105.05 -0.59 -2.79 16
23 C 0.06 0.65 11.96 -17.37 -0.21 0.44 16
24 N -0.30 -3.52 12.70 30.62 0.39 -3.13 16
25 N -0.48 -4.22 7.36 30.45 0.22 -4.00 16
26 H 0.44 2.42 8.96 -182.61 -1.64 0.78 16
27 C 0.07 0.61 11.90 -17.22 -0.21 0.40 16
28 C 0.01 0.15 7.78 -3.25 -0.03 0.13 16
29 C 0.01 0.08 7.54 -6.68 -0.05 0.02 16
30 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16
31 H 0.12 3.16 6.22 -52.48 -0.33 2.83 16
32 H 0.08 1.84 8.06 -52.49 -0.42 1.41 16
33 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16
34 H 0.08 1.61 8.03 -52.49 -0.42 1.19 16
35 H 0.02 0.40 7.45 -51.93 -0.39 0.01 16
36 H 0.08 1.66 7.34 -51.93 -0.38 1.27 16
37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16
38 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16
39 H 0.07 0.77 7.48 -51.93 -0.39 0.38 16
40 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16
41 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16
42 H 0.05 0.43 7.39 -51.93 -0.38 0.04 16
43 H 0.18 1.60 8.06 -52.48 -0.42 1.18 16
44 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16
45 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
46 H 0.07 0.61 7.92 -51.93 -0.41 0.19 16
47 H 0.06 0.83 7.77 -51.93 -0.40 0.43 16
48 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16
LS Contribution 391.32 15.07 5.90 5.90
Total: -1.00 -30.28 391.32 -13.83 -44.11
By element:
Atomic # 1 Polarization: 16.40 SS G_CDS: -8.44 Total: 7.97 kcal
Atomic # 6 Polarization: -23.81 SS G_CDS: -4.46 Total: -28.26 kcal
Atomic # 7 Polarization: -41.89 SS G_CDS: -1.80 Total: -43.69 kcal
Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -30.28 -13.83 -44.11 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001276242123.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 220.157 kcal
(2) G-P(sol) polarization free energy of solvation -30.280 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) 176.049 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds