Wall clock time and date at job start Tue Mar 31 2020 21:55:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30814 * 1
3 3 Si 1.86797 * 120.00475 * 2 1
4 4 H 1.48505 * 109.46786 * 265.15327 * 3 2 1
5 5 H 1.48497 * 109.47035 * 25.14921 * 3 2 1
6 6 H 1.48497 * 109.47380 * 145.15566 * 3 2 1
7 7 C 1.39949 * 119.99883 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00133 * 163.33996 * 7 2 1
9 9 C 1.41394 * 119.99809 * 343.34995 * 7 2 1
10 10 C 1.40730 * 120.24657 * 334.12798 * 9 7 2
11 11 C 1.37598 * 119.74815 * 179.69808 * 10 9 7
12 12 C 1.38658 * 120.24494 * 0.60755 * 11 10 9
13 13 C 1.38612 * 120.50351 * 359.66610 * 12 11 10
14 14 C 1.37640 * 120.24559 * 0.02932 * 13 12 11
15 15 C 1.50698 * 120.12685 * 180.02562 * 14 13 12
16 16 N 1.46903 * 109.47055 * 259.97730 * 15 14 13
17 17 C 1.47727 * 111.00120 * 73.61561 * 16 15 14
18 18 C 1.52265 * 87.55913 * 137.73452 * 17 16 15
19 19 C 1.52686 * 122.14225 * 99.93599 * 18 17 16
20 20 N 1.48212 * 85.72423 * 104.12924 * 19 18 17
21 21 C 1.46901 * 111.00519 * 136.73868 * 20 19 18
22 22 C 1.50702 * 109.46800 * 90.28125 * 21 20 19
23 23 C 1.39865 * 126.04288 * 269.69000 * 22 21 20
24 24 N 1.30831 * 108.20550 * 179.81997 * 23 22 21
25 25 N 1.40083 * 108.20378 * 0.44291 * 24 23 22
26 26 H 0.97000 * 126.04163 * 179.73799 * 25 24 23
27 27 C 1.34946 * 107.92744 * 359.71665 * 25 24 23
28 28 C 1.48219 * 91.07191 * 23.71483 * 20 19 18
29 29 C 1.47729 * 110.99989 * 169.99867 * 16 15 14
30 30 H 0.97006 * 120.00124 * 0.02562 * 1 2 3
31 31 H 1.08004 * 120.12473 * 0.02562 * 10 9 7
32 32 H 1.07997 * 119.87851 * 180.31738 * 11 10 9
33 33 H 1.08002 * 119.74719 * 179.69582 * 12 11 10
34 34 H 1.08000 * 119.87576 * 180.02562 * 13 12 11
35 35 H 1.08999 * 109.46988 * 19.97674 * 15 14 13
36 36 H 1.08997 * 109.47257 * 139.97545 * 15 14 13
37 37 H 1.09003 * 113.53050 * 252.40802 * 17 16 15
38 38 H 1.08992 * 113.53768 * 23.05573 * 17 16 15
39 39 H 1.09003 * 113.83448 * 218.32810 * 19 18 17
40 40 H 1.09007 * 113.83353 * 349.92475 * 19 18 17
41 41 H 1.08994 * 109.47028 * 210.28443 * 21 20 19
42 42 H 1.08999 * 109.46702 * 330.28288 * 21 20 19
43 43 H 1.08008 * 125.89852 * 0.02562 * 23 22 21
44 44 H 1.07996 * 126.13347 * 180.02562 * 27 25 24
45 45 H 1.08997 * 113.83482 * 222.08773 * 28 20 19
46 46 H 1.08995 * 113.82894 * 90.48151 * 28 20 19
47 47 H 1.08995 * 113.53604 * 336.93506 * 29 16 15
48 48 H 1.09000 * 113.53747 * 107.52599 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3081 0.0000 0.0000
3 14 2.2423 1.6176 0.0000
4 1 2.5922 1.9871 -1.3951
5 1 1.3923 2.6800 0.5950
6 1 3.4848 1.4718 0.7999
7 6 2.0079 -1.2120 0.0005
8 1 3.0539 -1.2318 -0.2676
9 6 1.3453 -2.4106 0.3519
10 6 0.2173 -2.3768 1.1928
11 6 -0.4233 -3.5489 1.5232
12 6 0.0460 -4.7613 1.0411
13 6 1.1595 -4.8071 0.2168
14 6 1.8124 -3.6466 -0.1317
15 6 3.0223 -3.6995 -1.0284
16 7 4.2406 -3.6013 -0.2134
17 6 4.4909 -4.8599 0.5184
18 6 5.9610 -4.7030 0.1545
19 6 6.9868 -4.1473 1.1395
20 7 7.4315 -5.5522 1.2978
21 6 8.8977 -5.6429 1.3050
22 6 9.4016 -5.5208 2.7200
23 6 9.7524 -4.3325 3.3690
24 7 10.1383 -4.6287 4.5835
25 7 10.0548 -6.0179 4.7427
26 1 10.2830 -6.5154 5.5435
27 6 9.6002 -6.5421 3.5853
28 6 6.8840 -5.9047 -0.0337
29 6 5.4432 -3.8871 -1.0223
30 1 -0.4850 0.8401 -0.0004
31 1 -0.1473 -1.4340 1.5730
32 1 -1.2922 -3.5249 2.1641
33 1 -0.4601 -5.6769 1.3095
34 1 1.5162 -5.7570 -0.1532
35 1 3.0271 -4.6414 -1.5770
36 1 2.9888 -2.8688 -1.7333
37 1 4.2971 -4.7870 1.5886
38 1 4.0198 -5.7301 0.0615
39 1 7.7324 -3.4985 0.6798
40 1 6.5461 -3.7205 2.0406
41 1 9.2043 -6.6037 0.8917
42 1 9.3144 -4.8375 0.7001
43 1 9.7089 -3.3412 2.9424
44 1 9.4256 -7.5889 3.3854
45 1 6.3623 -6.8615 -0.0562
46 1 7.5984 -5.7880 -0.8485
47 1 5.2385 -4.4852 -1.9101
48 1 6.0430 -3.0028 -1.2378
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001276242123.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:55:38
Heat of formation + Delta-G solvation = 155.150609 kcal
Electronic energy + Delta-G solvation = -28456.293510 eV
Core-core repulsion = 24706.972235 eV
Total energy + Delta-G solvation = -3749.321274 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.180 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.24529 -41.79770 -39.59883 -38.27021 -35.44813 -33.66376 -32.57959 -31.96802
-31.28591 -29.42982 -27.57447 -27.09607 -26.95121 -26.65045 -24.32846 -22.92449
-22.78413 -22.28646 -21.10997 -20.84723 -19.08956 -18.98315 -18.55601 -17.24020
-16.83173 -16.69574 -16.52847 -16.03401 -15.82382 -15.50726 -15.43877 -15.29124
-15.02400 -14.77692 -14.39813 -14.33162 -13.88245 -13.76887 -13.43695 -13.36458
-13.20959 -12.92705 -12.81470 -12.72655 -12.54086 -12.48752 -12.26388 -12.07608
-11.55928 -11.42750 -11.37838 -11.36533 -11.19527 -11.00970 -10.93691 -10.56058
-9.68939 -9.49961 -9.34029 -9.20270 -9.12298 -8.55605 -6.21161 1.02943
1.04910 1.16056 1.39373 1.50245 1.57939 1.83902 2.13577 2.24717
2.81545 3.03979 3.22343 3.52786 3.71094 3.87050 3.87908 4.07450
4.16969 4.30890 4.35812 4.41236 4.42477 4.52088 4.59088 4.63506
4.64472 4.69663 4.75711 4.78851 4.81192 4.85426 4.89034 4.92720
5.01435 5.10605 5.14869 5.21606 5.25813 5.29435 5.40879 5.55627
5.57422 5.63898 5.72315 5.82612 6.10985 6.21252 6.25994 6.27663
6.38839 6.50502 6.50662 6.76545 6.81577 7.08311 7.16539 8.41254
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.011869 B = 0.002729 C = 0.002525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2358.597057 B =10258.077818 C =11086.970622
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.832 5.832
2 C 0.032 3.968
3 Si 0.972 3.028
4 H -0.261 1.261
5 H -0.272 1.272
6 H -0.262 1.262
7 C -0.471 4.471
8 H 0.085 0.915
9 C 0.097 3.903
10 C -0.197 4.197
11 C -0.116 4.116
12 C -0.246 4.246
13 C -0.090 4.090
14 C -0.197 4.197
15 C 0.101 3.899
16 N -0.480 5.480
17 C 0.042 3.958
18 C -0.110 4.110
19 C 0.042 3.958
20 N -0.484 5.484
21 C 0.102 3.898
22 C -0.243 4.243
23 C 0.047 3.953
24 N -0.340 5.340
25 N -0.476 5.476
26 H 0.450 0.550
27 C 0.081 3.919
28 C 0.030 3.970
29 C 0.011 3.989
30 H 0.283 0.717
31 H 0.094 0.906
32 H 0.102 0.898
33 H 0.113 0.887
34 H 0.113 0.887
35 H 0.043 0.957
36 H 0.058 0.942
37 H 0.054 0.946
38 H 0.072 0.928
39 H 0.087 0.913
40 H 0.063 0.937
41 H 0.095 0.905
42 H 0.058 0.942
43 H 0.186 0.814
44 H 0.207 0.793
45 H 0.094 0.906
46 H 0.095 0.905
47 H 0.081 0.919
48 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.351 -12.768 -0.051 23.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.458 5.458
2 C -0.182 4.182
3 Si 0.794 3.206
4 H -0.185 1.185
5 H -0.197 1.197
6 H -0.186 1.186
7 C -0.501 4.501
8 H 0.103 0.897
9 C 0.095 3.905
10 C -0.216 4.216
11 C -0.134 4.134
12 C -0.266 4.266
13 C -0.108 4.108
14 C -0.198 4.198
15 C -0.026 4.026
16 N -0.202 5.202
17 C -0.087 4.087
18 C -0.111 4.111
19 C -0.087 4.087
20 N -0.207 5.207
21 C -0.027 4.027
22 C -0.255 4.255
23 C -0.140 4.140
24 N -0.163 5.163
25 N -0.185 5.185
26 H 0.295 0.705
27 C -0.068 4.068
28 C -0.098 4.098
29 C -0.118 4.118
30 H 0.094 0.906
31 H 0.112 0.888
32 H 0.120 0.880
33 H 0.131 0.869
34 H 0.130 0.870
35 H 0.061 0.939
36 H 0.076 0.924
37 H 0.073 0.927
38 H 0.090 0.910
39 H 0.105 0.895
40 H 0.082 0.918
41 H 0.113 0.887
42 H 0.076 0.924
43 H 0.203 0.797
44 H 0.224 0.776
45 H 0.113 0.887
46 H 0.113 0.887
47 H 0.100 0.900
48 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 19.306 -11.868 1.950 22.746
hybrid contribution -0.383 0.317 -1.163 1.265
sum 18.922 -11.551 0.787 22.184
Atomic orbital electron populations
1.69903 1.08958 1.30056 1.36923 1.26739 0.95342 1.04394 0.91684
0.85362 0.79093 0.76578 0.79571 1.18537 1.19654 1.18629 1.19828
0.98062 0.91471 1.40724 0.89667 1.17754 0.91019 0.93018 0.88732
1.21315 1.00772 0.96700 1.02857 1.20923 0.99003 0.93440 1.00080
1.20677 1.01703 0.96565 1.07607 1.20699 0.95747 0.96497 0.97893
1.19834 1.00949 0.93148 1.05919 1.21013 0.88857 0.98969 0.93755
1.69069 1.01330 1.32321 1.17514 1.23200 0.93687 0.92352 0.99497
1.22754 0.94027 0.97597 0.96700 1.23518 0.95861 0.91614 0.97670
1.68586 1.10666 1.13047 1.28400 1.20885 0.87931 1.02720 0.91183
1.20122 1.13687 0.92063 0.99605 1.24078 0.97954 1.00532 0.91408
1.77258 1.26428 0.92558 1.20055 1.46347 1.52993 1.05140 1.14056
0.70466 1.22897 0.96954 1.01077 0.85867 1.23755 0.96298 0.98041
0.91721 1.23682 0.92825 0.99452 0.95794 0.90617 0.88785 0.88006
0.86940 0.86952 0.93905 0.92364 0.92718 0.90984 0.89468 0.91798
0.88667 0.92421 0.79731 0.77599 0.88721 0.88662 0.90046 0.89756
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -45.02 10.98 21.83 0.24 -44.78 16
2 C 0.03 1.67 5.15 85.26 0.44 2.11 16
3 Si 0.97 39.96 29.59 68.60 2.03 41.99 16
4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16
5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16
6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16
7 C -0.47 -25.59 8.19 23.46 0.19 -25.39 16
8 H 0.09 4.54 6.84 -2.91 -0.02 4.52 16
9 C 0.10 5.32 5.56 -21.29 -0.12 5.20 16
10 C -0.20 -10.84 8.69 22.73 0.20 -10.65 16
11 C -0.12 -5.67 10.02 22.22 0.22 -5.45 16
12 C -0.25 -11.01 10.05 22.46 0.23 -10.78 16
13 C -0.09 -3.92 9.54 22.22 0.21 -3.71 16
14 C -0.20 -9.34 5.10 -19.40 -0.10 -9.44 16
15 C 0.10 4.04 4.14 85.56 0.35 4.39 16
16 N -0.48 -17.25 6.13 -932.25 -5.72 -22.96 16
17 C 0.04 1.30 7.03 84.00 0.59 1.89 16
18 C -0.11 -2.59 1.46 -52.79 -0.08 -2.67 16
19 C 0.04 0.97 7.78 85.95 0.67 1.63 16
20 N -0.48 -9.47 6.14 -934.70 -5.74 -15.21 16
21 C 0.10 1.52 5.28 85.56 0.45 1.97 16
22 C -0.24 -4.31 5.66 -20.14 -0.11 -4.43 16
23 C 0.05 0.98 11.96 85.24 1.02 2.00 16
24 N -0.34 -7.88 12.70 -57.02 -0.72 -8.61 16
25 N -0.48 -7.71 7.36 -57.59 -0.42 -8.14 16
26 H 0.45 4.36 8.96 -213.33 -1.91 2.45 16
27 C 0.08 1.16 11.90 83.54 0.99 2.16 16
28 C 0.03 0.51 7.78 85.95 0.67 1.18 16
29 C 0.01 0.30 7.54 84.00 0.63 0.93 16
30 H 0.28 14.01 8.30 -92.70 -0.77 13.24 16
31 H 0.09 5.46 6.22 -2.91 -0.02 5.45 16
32 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16
33 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16
34 H 0.11 4.15 8.03 -2.91 -0.02 4.13 16
35 H 0.04 1.49 7.45 -2.39 -0.02 1.47 16
36 H 0.06 2.51 7.34 -2.39 -0.02 2.49 16
37 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
38 H 0.07 2.11 7.71 -2.39 -0.02 2.10 16
39 H 0.09 1.71 7.48 -2.39 -0.02 1.69 16
40 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16
41 H 0.10 1.06 8.08 -2.39 -0.02 1.04 16
42 H 0.06 0.79 7.39 -2.39 -0.02 0.77 16
43 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16
44 H 0.21 1.42 8.06 -2.91 -0.02 1.40 16
45 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16
46 H 0.10 1.18 7.92 -2.39 -0.02 1.16 16
47 H 0.08 1.85 7.77 -2.39 -0.02 1.84 16
48 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16
Total: -1.00 -68.36 391.32 -4.81 -73.17
By element:
Atomic # 1 Polarization: 34.53 SS G_CDS: -0.94 Total: 33.59 kcal
Atomic # 6 Polarization: -55.51 SS G_CDS: 6.46 Total: -49.05 kcal
Atomic # 7 Polarization: -87.33 SS G_CDS: -12.36 Total: -99.69 kcal
Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal
Total: -68.36 -4.81 -73.17 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001276242123.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 228.317 kcal
(2) G-P(sol) polarization free energy of solvation -68.357 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.960 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.166 kcal
(6) G-S(sol) free energy of system = (1) + (5) 155.151 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds