Wall clock time and date at job start Tue Mar 31 2020 21:55:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30823 * 1
3 3 Si 1.86802 * 119.99974 * 2 1
4 4 H 1.48503 * 109.47311 * 240.00393 * 3 2 1
5 5 H 1.48498 * 109.47065 * 0.02562 * 3 2 1
6 6 H 1.48495 * 109.46840 * 120.00009 * 3 2 1
7 7 C 1.39941 * 119.99972 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00153 * 163.50698 * 7 2 1
9 9 C 1.41392 * 120.00038 * 343.50382 * 7 2 1
10 10 C 1.40735 * 120.24720 * 334.17161 * 9 7 2
11 11 C 1.37588 * 119.75108 * 180.02562 * 10 9 7
12 12 C 1.38658 * 120.24630 * 0.02562 * 11 10 9
13 13 C 1.38608 * 120.50018 * 359.72537 * 12 11 10
14 14 C 1.37630 * 120.24950 * 0.55170 * 13 12 11
15 15 C 1.50707 * 120.13080 * 179.72324 * 14 13 12
16 16 N 1.46893 * 109.47200 * 259.72897 * 15 14 13
17 17 C 1.48179 * 111.00058 * 169.99880 * 16 15 14
18 18 C 1.52844 * 85.92929 * 223.21119 * 17 16 15
19 19 C 1.52864 * 121.43898 * 148.85159 * 18 17 16
20 20 C 1.54139 * 85.93219 * 148.92415 * 19 18 17
21 21 N 1.46811 * 121.51939 * 257.07580 * 18 17 16
22 22 C 1.46900 * 110.99986 * 97.50687 * 21 18 17
23 23 C 1.50700 * 109.47383 * 169.99654 * 22 21 18
24 24 C 1.39865 * 126.04049 * 269.69128 * 23 22 21
25 25 N 1.30840 * 108.19881 * 179.81648 * 24 23 22
26 26 N 1.40078 * 108.20874 * 0.43886 * 25 24 23
27 27 H 0.97002 * 126.04225 * 179.70019 * 26 25 24
28 28 C 1.34951 * 107.92566 * 359.71905 * 26 25 24
29 29 C 1.48436 * 111.08606 * 70.42118 * 16 15 14
30 30 H 0.97001 * 120.00098 * 0.02562 * 1 2 3
31 31 H 1.08004 * 120.12150 * 0.02562 * 10 9 7
32 32 H 1.08005 * 119.87901 * 179.97438 * 11 10 9
33 33 H 1.08011 * 119.74970 * 180.02562 * 12 11 10
34 34 H 1.08005 * 119.87693 * 180.30006 * 13 12 11
35 35 H 1.09005 * 109.46942 * 139.72601 * 15 14 13
36 36 H 1.09005 * 109.46897 * 19.72973 * 15 14 13
37 37 H 1.09004 * 113.82172 * 108.93189 * 17 16 15
38 38 H 1.09001 * 113.82173 * 337.48972 * 17 16 15
39 39 H 1.09001 * 113.79973 * 263.18188 * 19 18 17
40 40 H 1.09003 * 113.79475 * 34.55342 * 19 18 17
41 41 H 1.08999 * 113.71484 * 91.52163 * 20 19 18
42 42 H 1.09003 * 113.71935 * 222.64201 * 20 19 18
43 43 H 1.08997 * 109.47085 * 289.99963 * 22 21 18
44 44 H 1.09000 * 109.47320 * 49.99659 * 22 21 18
45 45 H 1.07996 * 125.90078 * 0.02562 * 24 23 22
46 46 H 1.07998 * 126.13243 * 180.02562 * 28 26 25
47 47 H 1.09007 * 113.70804 * 22.48951 * 29 16 15
48 48 H 1.09001 * 114.00743 * 250.98302 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3082 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 3.0959 1.6965 -1.2126
5 1 1.2772 2.7464 0.0006
6 1 3.0959 1.6964 1.2125
7 6 2.0079 -1.2119 -0.0005
8 1 3.0546 -1.2311 -0.2661
9 6 1.3446 -2.4114 0.3466
10 6 0.2141 -2.3795 1.1842
11 6 -0.4232 -3.5528 1.5159
12 6 0.0448 -4.7637 1.0287
13 6 1.1542 -4.8067 0.1989
14 6 1.8108 -3.6460 -0.1414
15 6 3.0205 -3.6964 -1.0388
16 7 4.2390 -3.6020 -0.2239
17 6 5.4449 -3.8865 -1.0367
18 6 5.9170 -4.7209 0.1537
19 6 6.7949 -5.9577 -0.0377
20 6 7.3963 -5.6085 1.3379
21 7 6.9377 -4.2224 1.0837
22 6 6.3189 -3.6442 2.2840
23 6 7.3829 -3.3697 3.3153
24 6 7.8151 -4.2555 4.3076
25 7 8.7500 -3.6629 5.0053
26 7 8.9354 -2.3758 4.4845
27 1 9.5639 -1.7130 4.8111
28 6 8.0849 -2.2204 3.4484
29 6 4.4502 -4.8407 0.5663
30 1 -0.4850 0.8400 -0.0004
31 1 -0.1518 -1.4374 1.5651
32 1 -1.2907 -3.5308 2.1589
33 1 -0.4619 -5.6800 1.2939
34 1 1.5072 -5.7550 -0.1788
35 1 2.9873 -2.8630 -1.7406
36 1 3.0244 -4.6363 -1.5908
37 1 6.0615 -3.0091 -1.2315
38 1 5.2432 -4.4730 -1.9331
39 1 6.2381 -6.8947 -0.0494
40 1 7.5014 -5.8720 -0.8633
41 1 6.8895 -6.0916 2.1733
42 1 8.4804 -5.7123 1.3816
43 1 5.8181 -2.7123 2.0216
44 1 5.5907 -4.3457 2.6912
45 1 7.4440 -5.2569 4.4680
46 1 7.9829 -1.3374 2.8350
47 1 3.9468 -5.7150 0.1537
48 1 4.2824 -4.7181 1.6364
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001276243060.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:55:33
Heat of formation + Delta-G solvation = 155.505592 kcal
Electronic energy + Delta-G solvation = -29376.356439 eV
Core-core repulsion = 25627.050558 eV
Total energy + Delta-G solvation = -3749.305881 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.180 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.40496 -41.75342 -39.54349 -37.79875 -35.43351 -33.55001 -32.70969 -32.12728
-31.27089 -29.36877 -28.79753 -27.19965 -26.88378 -24.95344 -24.88555 -22.98066
-22.76741 -22.27797 -21.07160 -20.97224 -18.96590 -18.88653 -18.68071 -17.29770
-17.12707 -16.71275 -16.41867 -16.15240 -15.62835 -15.52412 -15.38901 -15.32776
-15.20287 -14.53907 -14.35289 -14.16888 -14.04503 -13.62731 -13.37146 -13.27809
-13.11550 -12.89128 -12.75127 -12.64551 -12.54814 -12.34346 -12.28156 -12.14262
-12.00272 -11.55802 -11.48159 -11.29103 -11.19573 -10.99142 -10.92976 -10.57648
-9.67895 -9.46220 -9.32637 -9.18177 -9.10524 -8.54377 -6.19825 0.99004
1.04397 1.17732 1.39144 1.49064 1.57751 1.79928 2.07862 2.24623
2.82280 2.94662 3.27336 3.50872 3.75211 3.81427 3.86173 4.05838
4.18205 4.28300 4.31235 4.36980 4.39962 4.51052 4.57159 4.62702
4.63395 4.65906 4.74584 4.75383 4.84984 4.87609 4.91481 4.98504
5.02793 5.06769 5.18921 5.23038 5.28621 5.35058 5.42514 5.57437
5.65822 5.67135 5.69889 5.84066 6.12576 6.19187 6.25545 6.28830
6.38338 6.44563 6.51851 6.72962 6.83249 7.09987 7.18173 8.42079
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.009605 B = 0.003819 C = 0.003277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2914.529051 B = 7330.188908 C = 8541.228814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.832 5.832
2 C 0.034 3.966
3 Si 0.970 3.030
4 H -0.260 1.260
5 H -0.273 1.273
6 H -0.264 1.264
7 C -0.470 4.470
8 H 0.085 0.915
9 C 0.101 3.899
10 C -0.196 4.196
11 C -0.116 4.116
12 C -0.245 4.245
13 C -0.089 4.089
14 C -0.194 4.194
15 C 0.102 3.898
16 N -0.479 5.479
17 C 0.022 3.978
18 C 0.040 3.960
19 C -0.123 4.123
20 C 0.011 3.989
21 N -0.453 5.453
22 C 0.111 3.889
23 C -0.244 4.244
24 C 0.055 3.945
25 N -0.327 5.327
26 N -0.471 5.471
27 H 0.451 0.549
28 C 0.079 3.921
29 C 0.014 3.986
30 H 0.283 0.717
31 H 0.093 0.907
32 H 0.100 0.900
33 H 0.112 0.888
34 H 0.113 0.887
35 H 0.056 0.944
36 H 0.041 0.959
37 H 0.082 0.918
38 H 0.085 0.915
39 H 0.086 0.914
40 H 0.100 0.900
41 H 0.074 0.926
42 H 0.089 0.911
43 H 0.064 0.936
44 H 0.045 0.955
45 H 0.194 0.806
46 H 0.195 0.805
47 H 0.078 0.922
48 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.744 -7.623 1.946 17.600
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.458 5.458
2 C -0.180 4.180
3 Si 0.792 3.208
4 H -0.184 1.184
5 H -0.198 1.198
6 H -0.189 1.189
7 C -0.500 4.500
8 H 0.103 0.897
9 C 0.098 3.902
10 C -0.215 4.215
11 C -0.135 4.135
12 C -0.264 4.264
13 C -0.108 4.108
14 C -0.196 4.196
15 C -0.026 4.026
16 N -0.201 5.201
17 C -0.107 4.107
18 C -0.052 4.052
19 C -0.162 4.162
20 C -0.117 4.117
21 N -0.175 5.175
22 C -0.018 4.018
23 C -0.255 4.255
24 C -0.132 4.132
25 N -0.150 5.150
26 N -0.181 5.181
27 H 0.297 0.703
28 C -0.070 4.070
29 C -0.116 4.116
30 H 0.093 0.907
31 H 0.111 0.889
32 H 0.118 0.882
33 H 0.130 0.870
34 H 0.130 0.870
35 H 0.074 0.926
36 H 0.059 0.941
37 H 0.101 0.899
38 H 0.103 0.897
39 H 0.105 0.895
40 H 0.119 0.881
41 H 0.092 0.908
42 H 0.108 0.892
43 H 0.083 0.917
44 H 0.064 0.936
45 H 0.211 0.789
46 H 0.211 0.789
47 H 0.096 0.904
48 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 16.742 -6.408 3.020 18.179
hybrid contribution -1.349 0.347 -0.494 1.478
sum 15.393 -6.061 2.526 16.735
Atomic orbital electron populations
1.69900 1.08897 1.30008 1.37038 1.26693 0.95292 1.04250 0.91759
0.85432 0.78857 0.76585 0.79921 1.18432 1.19802 1.18893 1.19807
0.98010 0.91428 1.40732 0.89713 1.17705 0.90912 0.92913 0.88652
1.21306 1.00750 0.96622 1.02847 1.20917 0.98999 0.93480 1.00105
1.20659 1.01770 0.96517 1.07442 1.20685 0.95758 0.96483 0.97860
1.19796 1.00840 0.93160 1.05779 1.20987 0.88904 0.98851 0.93819
1.68732 1.01106 1.33853 1.16413 1.23781 0.92123 0.99368 0.95452
1.23465 0.91021 0.95337 0.95370 1.23207 0.98198 0.96550 0.98196
1.23832 1.01688 0.88982 0.97223 1.68343 1.22344 1.17272 1.09543
1.20583 0.92576 0.99952 0.88691 1.20029 1.06611 0.95768 1.03128
1.24046 0.94678 1.00807 0.93657 1.77226 1.21515 0.92758 1.23542
1.46288 1.33004 1.13036 1.25769 0.70317 1.22752 0.91926 1.00670
0.91670 1.23950 0.94320 0.93183 1.00124 0.90684 0.88866 0.88152
0.87028 0.86950 0.92595 0.94068 0.89930 0.89687 0.89519 0.88125
0.90783 0.89225 0.91726 0.93647 0.78929 0.78851 0.90431 0.90858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.83 -44.40 10.97 21.83 0.24 -44.16 16
2 C 0.03 1.72 5.16 85.26 0.44 2.16 16
3 Si 0.97 39.42 29.59 68.60 2.03 41.45 16
4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16
5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16
6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16
7 C -0.47 -24.97 8.18 23.46 0.19 -24.77 16
8 H 0.08 4.43 6.85 -2.91 -0.02 4.42 16
9 C 0.10 5.34 5.56 -21.29 -0.12 5.22 16
10 C -0.20 -10.50 8.69 22.73 0.20 -10.30 16
11 C -0.12 -5.54 10.02 22.22 0.22 -5.32 16
12 C -0.24 -10.56 10.05 22.46 0.23 -10.33 16
13 C -0.09 -3.75 9.47 22.21 0.21 -3.54 16
14 C -0.19 -8.89 5.02 -19.40 -0.10 -8.99 16
15 C 0.10 3.95 4.14 85.56 0.35 4.31 16
16 N -0.48 -16.64 5.99 -927.40 -5.55 -22.19 16
17 C 0.02 0.60 7.87 86.00 0.68 1.27 16
18 C 0.04 0.97 1.48 4.80 0.01 0.98 16
19 C -0.12 -2.19 8.06 30.94 0.25 -1.94 16
20 C 0.01 0.21 7.26 86.32 0.63 0.83 16
21 N -0.45 -10.92 6.28 -874.65 -5.49 -16.41 16
22 C 0.11 2.93 4.65 85.56 0.40 3.33 16
23 C -0.24 -5.81 5.23 -20.14 -0.11 -5.91 16
24 C 0.05 1.24 11.67 85.23 1.00 2.23 16
25 N -0.33 -7.87 12.70 -57.03 -0.72 -8.60 16
26 N -0.47 -9.07 7.36 -57.59 -0.42 -9.49 16
27 H 0.45 5.59 8.96 -213.33 -1.91 3.68 16
28 C 0.08 1.64 11.90 83.54 0.99 2.64 16
29 C 0.01 0.42 6.47 85.95 0.56 0.97 16
30 H 0.28 13.86 8.30 -92.71 -0.77 13.09 16
31 H 0.09 5.31 6.21 -2.91 -0.02 5.29 16
32 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16
33 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16
34 H 0.11 3.97 8.03 -2.91 -0.02 3.94 16
35 H 0.06 2.40 7.34 -2.38 -0.02 2.38 16
36 H 0.04 1.40 7.57 -2.38 -0.02 1.38 16
37 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16
38 H 0.09 2.05 7.80 -2.39 -0.02 2.03 16
39 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16
40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16
41 H 0.07 1.30 7.77 -2.39 -0.02 1.28 16
42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
44 H 0.05 1.24 5.93 -2.39 -0.01 1.23 16
45 H 0.19 3.46 8.06 -2.91 -0.02 3.43 16
46 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16
47 H 0.08 2.14 7.79 -2.38 -0.02 2.12 16
48 H 0.07 2.37 5.92 -2.39 -0.01 2.36 16
Total: -1.00 -63.97 386.50 -4.83 -68.80
By element:
Atomic # 1 Polarization: 38.68 SS G_CDS: -0.93 Total: 37.75 kcal
Atomic # 6 Polarization: -53.17 SS G_CDS: 6.02 Total: -47.15 kcal
Atomic # 7 Polarization: -88.90 SS G_CDS: -11.95 Total: -100.85 kcal
Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal
Total: -63.97 -4.83 -68.80 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001276243060.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 224.310 kcal
(2) G-P(sol) polarization free energy of solvation -63.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.337 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.831 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal
(6) G-S(sol) free energy of system = (1) + (5) 155.506 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds