Wall clock time and date at job start Tue Mar 31 2020 21:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47265 * 2 1 4 4 C 1.52998 * 109.47217 * 240.00621 * 2 1 3 5 5 N 1.46504 * 109.47104 * 184.99976 * 4 2 1 6 6 C 1.46497 * 120.00154 * 269.99333 * 5 4 2 7 7 C 1.34775 * 120.00092 * 89.99805 * 5 4 2 8 8 O 1.21287 * 119.99831 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00286 * 179.97438 * 7 5 4 10 10 C 1.52995 * 109.47523 * 179.97438 * 9 7 5 11 11 C 1.53004 * 109.47487 * 180.02562 * 10 9 7 12 12 O 1.42893 * 109.47267 * 180.02562 * 11 10 9 13 13 C 1.35956 * 117.00026 * 179.97438 * 12 11 10 14 14 C 1.38657 * 120.06128 * 359.97438 * 13 12 11 15 15 C 1.38184 * 119.96964 * 180.02562 * 14 13 12 16 16 C 1.38265 * 120.09281 * 359.97438 * 15 14 13 17 17 C 1.38248 * 120.12705 * 0.02562 * 16 15 14 18 18 C 1.38332 * 120.03366 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.05240 * 180.02562 * 18 17 16 20 20 N 1.46496 * 109.47202 * 120.00259 * 2 1 3 21 21 C 1.36938 * 119.99855 * 274.99914 * 20 2 1 22 22 H 1.07999 * 119.99993 * 0.02562 * 21 20 2 23 23 C 1.38813 * 119.99853 * 179.97438 * 21 20 2 24 24 N 1.31625 * 119.99527 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99986 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47146 * 90.00160 * 25 23 21 27 27 H 1.48508 * 109.46895 * 209.99751 * 25 23 21 28 28 H 1.48497 * 109.47353 * 329.99509 * 25 23 21 29 29 H 1.08996 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47160 * 299.99988 * 1 2 3 31 31 H 1.09001 * 109.47415 * 60.00052 * 1 2 3 32 32 H 1.08999 * 109.47906 * 64.99585 * 4 2 1 33 33 H 1.08998 * 109.46800 * 304.99613 * 4 2 1 34 34 H 1.08997 * 109.47493 * 270.00482 * 6 5 4 35 35 H 1.09004 * 109.46714 * 29.99944 * 6 5 4 36 36 H 1.08988 * 109.47358 * 149.99861 * 6 5 4 37 37 H 1.09004 * 109.46976 * 60.00006 * 9 7 5 38 38 H 1.09001 * 109.47011 * 300.00149 * 9 7 5 39 39 H 1.09007 * 109.47098 * 60.00288 * 10 9 7 40 40 H 1.09001 * 109.47491 * 300.00335 * 10 9 7 41 41 H 1.08994 * 109.46599 * 59.99869 * 11 10 9 42 42 H 1.09001 * 109.46881 * 300.00527 * 11 10 9 43 43 H 1.08004 * 120.01774 * 0.03769 * 14 13 12 44 44 H 1.08000 * 119.95526 * 180.27319 * 15 14 13 45 45 H 1.08001 * 119.93128 * 179.97438 * 16 15 14 46 46 H 1.07998 * 119.98480 * 180.02562 * 17 16 15 47 47 H 0.96993 * 120.00073 * 95.00393 * 20 2 1 48 48 H 0.96999 * 119.99381 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8985 -0.6117 8 8 3.3851 -2.7763 -0.1389 9 6 5.5776 -2.0070 -0.5518 10 6 5.9674 -3.3086 0.1514 11 6 7.4923 -3.4184 0.2127 12 8 7.8563 -4.6345 0.8690 13 6 9.1849 -4.8877 1.0068 14 6 10.1182 -3.9850 0.5201 15 6 11.4681 -4.2445 0.6608 16 6 11.8899 -5.4030 1.2866 17 6 10.9627 -6.3058 1.7733 18 6 9.6101 -6.0512 1.6354 19 9 8.7037 -6.9329 2.1113 20 7 2.0183 -0.6906 1.1961 21 6 2.1491 -0.0075 2.3757 22 1 1.8919 1.0403 2.4243 23 6 2.6113 -0.6621 3.5092 24 7 2.7365 -0.0055 4.6431 25 14 3.0556 -2.4745 3.4252 26 1 4.4884 -2.6166 3.0620 27 1 2.8155 -3.1048 4.7483 28 1 2.2160 -3.1429 2.3989 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7196 -1.2952 34 1 4.5425 0.0095 -2.8073 35 1 3.8090 1.1867 -1.6919 36 1 5.2721 0.2954 -1.2093 37 1 5.9813 -1.1599 0.0029 38 1 5.9827 -2.0049 -1.5638 39 1 5.5638 -4.1560 -0.4029 40 1 5.5624 -3.3104 1.1634 41 1 7.8955 -2.5711 0.7672 42 1 7.8977 -3.4165 -0.7991 43 1 9.7902 -3.0794 0.0316 44 1 12.1948 -3.5392 0.2856 45 1 12.9456 -5.6035 1.3948 46 1 11.2947 -7.2097 2.2622 47 1 2.2490 -1.6317 1.1525 48 1 3.0592 -0.4630 5.4353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278026625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:43 Heat of formation + Delta-G solvation = -79.734899 kcal Electronic energy + Delta-G solvation = -29572.842820 eV Core-core repulsion = 25350.274170 eV Total energy + Delta-G solvation = -4222.568650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.90200 -40.27735 -39.73378 -37.78529 -36.27799 -34.57401 -33.79282 -31.93638 -30.99467 -30.18129 -29.33178 -27.82803 -26.99624 -25.27745 -23.53919 -23.10629 -22.67281 -21.49538 -20.01489 -19.06691 -18.49996 -17.69037 -17.34112 -16.91354 -16.69547 -16.47986 -15.87718 -15.76283 -15.25707 -15.24173 -14.71551 -14.63223 -14.17996 -14.08857 -13.60248 -13.25809 -13.04534 -12.95137 -12.85523 -12.52501 -12.41913 -12.29851 -12.23773 -12.10696 -11.98471 -11.65848 -11.53336 -11.46009 -11.38883 -11.15190 -10.87072 -10.60202 -10.58938 -10.45827 -9.88299 -9.52851 -9.40096 -9.25674 -8.81845 -8.45081 -8.28232 -7.12501 -5.67430 -3.00562 0.81784 0.97101 2.75384 2.94750 3.28133 3.34787 3.53361 3.61234 3.74000 3.99547 4.39027 4.50102 4.62648 4.73311 4.77099 4.82281 4.90137 4.92936 5.03338 5.14567 5.16282 5.24164 5.28505 5.34991 5.38245 5.51635 5.59555 5.66226 5.67094 5.74222 5.75945 5.86876 5.89240 5.92926 6.04486 6.05856 6.18847 6.25208 6.27625 6.41088 6.47462 6.71347 6.81479 7.05779 7.10129 7.64724 8.11567 8.49218 8.55093 9.37612 10.10340 10.32524 11.50573 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.002901 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.167348 B = 9649.157259 C =10786.333591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.052 0.948 4 C 0.106 3.894 5 N -0.607 5.607 6 C 0.082 3.918 7 C 0.521 3.479 8 O -0.531 6.531 9 C -0.134 4.134 10 C -0.111 4.111 11 C 0.061 3.939 12 O -0.303 6.303 13 C 0.104 3.896 14 C -0.185 4.185 15 C -0.090 4.090 16 C -0.134 4.134 17 C -0.117 4.117 18 C 0.066 3.934 19 F -0.131 7.131 20 N -0.748 5.748 21 C -0.238 4.238 22 H 0.086 0.914 23 C 0.004 3.996 24 N -0.938 5.938 25 Si 0.878 3.122 26 H -0.284 1.284 27 H -0.297 1.297 28 H -0.266 1.266 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.139 0.861 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.141 0.859 47 H 0.376 0.624 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.353 -5.130 -16.336 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.017 4.017 5 N -0.340 5.340 6 C -0.062 4.062 7 C 0.309 3.691 8 O -0.408 6.408 9 C -0.174 4.174 10 C -0.149 4.149 11 C -0.014 4.014 12 O -0.216 6.216 13 C 0.057 3.943 14 C -0.204 4.204 15 C -0.108 4.108 16 C -0.153 4.153 17 C -0.136 4.136 18 C 0.046 3.954 19 F -0.110 7.110 20 N -0.395 5.395 21 C -0.369 4.369 22 H 0.103 0.897 23 C -0.191 4.191 24 N -0.586 5.586 25 Si 0.708 3.292 26 H -0.211 1.211 27 H -0.224 1.224 28 H -0.192 1.192 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.156 0.844 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.214 0.786 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.776 -5.580 -15.846 23.742 hybrid contribution 0.237 -0.982 0.179 1.026 sum 17.013 -6.562 -15.667 24.040 Atomic orbital electron populations 1.22382 0.98621 1.01037 1.00464 1.20592 0.92184 0.95789 0.86539 0.93050 1.21911 0.79104 1.02220 0.98476 1.47612 1.06948 1.20887 1.58516 1.21738 0.95764 0.91187 0.97496 1.20294 0.90121 0.81508 0.77186 1.90680 1.64727 1.40027 1.45351 1.21507 0.93910 0.99541 1.02398 1.21320 0.91816 0.97675 1.04055 1.22932 0.97174 0.84857 0.96404 1.86178 1.19228 1.41658 1.74579 1.19104 0.84261 0.93910 0.97054 1.21228 0.93366 1.00531 1.05227 1.21030 0.94963 0.97100 0.97691 1.20918 0.99638 0.94467 1.00250 1.21034 0.90099 1.01272 1.01175 1.17073 0.86988 0.88406 1.02957 1.91524 1.66464 1.66780 1.86221 1.43061 1.79356 1.10563 1.06492 1.19051 1.36473 0.95286 0.86047 0.89666 1.24610 1.01583 0.97395 0.95509 1.69719 1.53123 1.35567 1.00208 0.86641 0.79125 0.86971 0.76440 1.21081 1.22412 1.19162 0.93461 0.92168 0.94281 0.90669 0.90227 0.93082 0.90894 0.91189 0.88338 0.89017 0.89903 0.89391 0.91452 0.91700 0.84351 0.85031 0.84896 0.84115 0.78620 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.57 16 2 C 0.16 3.10 3.19 -67.94 -0.22 2.88 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C 0.11 1.66 5.14 -4.04 -0.02 1.64 16 5 N -0.61 -9.13 2.77 -181.58 -0.50 -9.63 16 6 C 0.08 0.85 10.24 59.85 0.61 1.46 16 7 C 0.52 8.96 6.97 -10.99 -0.08 8.89 16 8 O -0.53 -11.46 13.14 5.55 0.07 -11.38 16 9 C -0.13 -1.72 4.25 -27.89 -0.12 -1.84 16 10 C -0.11 -1.63 4.87 -26.73 -0.13 -1.76 16 11 C 0.06 0.73 4.74 37.16 0.18 0.90 16 12 O -0.30 -4.50 10.00 -19.60 -0.20 -4.69 16 13 C 0.10 1.33 6.69 -39.18 -0.26 1.07 16 14 C -0.18 -1.79 9.04 -39.45 -0.36 -2.15 16 15 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 16 C -0.13 -1.03 10.04 -39.57 -0.40 -1.43 16 17 C -0.12 -1.11 10.02 -39.54 -0.40 -1.50 16 18 C 0.07 0.84 7.31 -39.30 -0.29 0.55 16 19 F -0.13 -1.96 17.11 2.25 0.04 -1.92 16 20 N -0.75 -18.65 4.33 -53.43 -0.23 -18.88 16 21 C -0.24 -6.96 10.41 -15.06 -0.16 -7.12 16 22 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 23 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 24 N -0.94 -30.55 13.97 55.49 0.78 -29.78 16 25 Si 0.88 24.60 27.58 -169.99 -4.69 19.91 16 26 H -0.28 -7.78 6.69 56.52 0.38 -7.40 16 27 H -0.30 -8.43 7.11 56.52 0.40 -8.02 16 28 H -0.27 -7.52 6.52 56.52 0.37 -7.15 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.08 1.37 7.42 -51.93 -0.39 0.98 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.07 0.66 6.44 -51.94 -0.33 0.32 16 37 H 0.10 1.20 7.40 -51.93 -0.38 0.81 16 38 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 39 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.09 1.66 7.68 -51.93 -0.40 1.26 16 41 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 42 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 43 H 0.14 1.06 6.30 -52.48 -0.33 0.73 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 47 H 0.38 9.78 2.88 -40.82 -0.12 9.66 16 48 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 LS Contribution 394.17 15.07 5.94 5.94 Total: -1.00 -37.93 394.17 -7.98 -45.91 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.42 Total: 6.56 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.77 Total: -2.03 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.04 Total: -58.29 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.12 Total: -16.08 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -4.69 Total: 19.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.93 -7.98 -45.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278026625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.823 kcal (2) G-P(sol) polarization free energy of solvation -37.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds