Wall clock time and date at job start Tue Mar 31 2020 21:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47265 * 2 1 4 4 C 1.52998 * 109.47217 * 240.00621 * 2 1 3 5 5 N 1.46504 * 109.47104 * 184.99976 * 4 2 1 6 6 C 1.46497 * 120.00154 * 269.99333 * 5 4 2 7 7 C 1.34775 * 120.00092 * 89.99805 * 5 4 2 8 8 O 1.21287 * 119.99831 * 359.97438 * 7 5 4 9 9 C 1.50697 * 120.00286 * 179.97438 * 7 5 4 10 10 C 1.52995 * 109.47523 * 179.97438 * 9 7 5 11 11 C 1.53004 * 109.47487 * 180.02562 * 10 9 7 12 12 O 1.42893 * 109.47267 * 180.02562 * 11 10 9 13 13 C 1.35956 * 117.00026 * 179.97438 * 12 11 10 14 14 C 1.38657 * 120.06128 * 359.97438 * 13 12 11 15 15 C 1.38184 * 119.96964 * 180.02562 * 14 13 12 16 16 C 1.38265 * 120.09281 * 359.97438 * 15 14 13 17 17 C 1.38248 * 120.12705 * 0.02562 * 16 15 14 18 18 C 1.38332 * 120.03366 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.05240 * 180.02562 * 18 17 16 20 20 N 1.46496 * 109.47202 * 120.00259 * 2 1 3 21 21 C 1.36938 * 119.99855 * 274.99914 * 20 2 1 22 22 H 1.07999 * 119.99993 * 0.02562 * 21 20 2 23 23 C 1.38813 * 119.99853 * 179.97438 * 21 20 2 24 24 N 1.31625 * 119.99527 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99986 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47146 * 90.00160 * 25 23 21 27 27 H 1.48508 * 109.46895 * 209.99751 * 25 23 21 28 28 H 1.48497 * 109.47353 * 329.99509 * 25 23 21 29 29 H 1.08996 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47160 * 299.99988 * 1 2 3 31 31 H 1.09001 * 109.47415 * 60.00052 * 1 2 3 32 32 H 1.08999 * 109.47906 * 64.99585 * 4 2 1 33 33 H 1.08998 * 109.46800 * 304.99613 * 4 2 1 34 34 H 1.08997 * 109.47493 * 270.00482 * 6 5 4 35 35 H 1.09004 * 109.46714 * 29.99944 * 6 5 4 36 36 H 1.08988 * 109.47358 * 149.99861 * 6 5 4 37 37 H 1.09004 * 109.46976 * 60.00006 * 9 7 5 38 38 H 1.09001 * 109.47011 * 300.00149 * 9 7 5 39 39 H 1.09007 * 109.47098 * 60.00288 * 10 9 7 40 40 H 1.09001 * 109.47491 * 300.00335 * 10 9 7 41 41 H 1.08994 * 109.46599 * 59.99869 * 11 10 9 42 42 H 1.09001 * 109.46881 * 300.00527 * 11 10 9 43 43 H 1.08004 * 120.01774 * 0.03769 * 14 13 12 44 44 H 1.08000 * 119.95526 * 180.27319 * 15 14 13 45 45 H 1.08001 * 119.93128 * 179.97438 * 16 15 14 46 46 H 1.07998 * 119.98480 * 180.02562 * 17 16 15 47 47 H 0.96993 * 120.00073 * 95.00393 * 20 2 1 48 48 H 0.96999 * 119.99381 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5001 -0.8262 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0758 -1.8985 -0.6117 8 8 3.3851 -2.7763 -0.1389 9 6 5.5776 -2.0070 -0.5518 10 6 5.9674 -3.3086 0.1514 11 6 7.4923 -3.4184 0.2127 12 8 7.8563 -4.6345 0.8690 13 6 9.1849 -4.8877 1.0068 14 6 10.1182 -3.9850 0.5201 15 6 11.4681 -4.2445 0.6608 16 6 11.8899 -5.4030 1.2866 17 6 10.9627 -6.3058 1.7733 18 6 9.6101 -6.0512 1.6354 19 9 8.7037 -6.9329 2.1113 20 7 2.0183 -0.6906 1.1961 21 6 2.1491 -0.0075 2.3757 22 1 1.8919 1.0403 2.4243 23 6 2.6113 -0.6621 3.5092 24 7 2.7365 -0.0055 4.6431 25 14 3.0556 -2.4745 3.4252 26 1 4.4884 -2.6166 3.0620 27 1 2.8155 -3.1048 4.7483 28 1 2.2160 -3.1429 2.3989 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7516 -0.1582 -2.1370 33 1 1.6054 -1.7196 -1.2952 34 1 4.5425 0.0095 -2.8073 35 1 3.8090 1.1867 -1.6919 36 1 5.2721 0.2954 -1.2093 37 1 5.9813 -1.1599 0.0029 38 1 5.9827 -2.0049 -1.5638 39 1 5.5638 -4.1560 -0.4029 40 1 5.5624 -3.3104 1.1634 41 1 7.8955 -2.5711 0.7672 42 1 7.8977 -3.4165 -0.7991 43 1 9.7902 -3.0794 0.0316 44 1 12.1948 -3.5392 0.2856 45 1 12.9456 -5.6035 1.3948 46 1 11.2947 -7.2097 2.2622 47 1 2.2490 -1.6317 1.1525 48 1 3.0592 -0.4630 5.4353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278026625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:42 Heat of formation + Delta-G solvation = -105.197557 kcal Electronic energy + Delta-G solvation = -29573.946964 eV Core-core repulsion = 25350.274170 eV Total energy + Delta-G solvation = -4223.672794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.88741 -41.20964 -40.89800 -38.59503 -37.80484 -36.06981 -34.95607 -33.97779 -31.69560 -31.34599 -30.89064 -28.93253 -27.96579 -26.41509 -25.40814 -24.21916 -23.45004 -22.49628 -21.60747 -20.32089 -19.71380 -19.37431 -18.30246 -17.88652 -17.68262 -17.51060 -17.12982 -16.93956 -16.63140 -16.39401 -15.96120 -15.73256 -15.41947 -15.10420 -14.97259 -14.67494 -14.55323 -14.27862 -14.00349 -13.82336 -13.61985 -13.47303 -13.21629 -13.20733 -13.12482 -13.02666 -12.83956 -12.67868 -12.45883 -12.39755 -12.34448 -12.21177 -11.97607 -11.83650 -11.80139 -11.67895 -11.05142 -10.78418 -9.97185 -9.53198 -9.26453 -9.25259 -8.08654 -5.34441 0.09974 0.24127 1.23936 1.29042 1.43952 1.69637 1.88054 2.30173 2.39920 2.58678 3.21813 3.24327 3.50921 3.68816 3.73383 3.79344 3.85143 3.95666 4.10403 4.13104 4.20986 4.29576 4.31286 4.33859 4.39108 4.43927 4.53317 4.56386 4.61735 4.68972 4.79374 4.89248 4.95061 4.96381 5.00807 5.05139 5.07693 5.10442 5.23774 5.24145 5.40230 5.45066 5.68697 5.70392 5.78621 6.19029 6.27441 6.49593 7.08833 7.29168 7.93547 8.09826 9.13309 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.002901 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.167348 B = 9649.157259 C =10786.333591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.054 0.946 4 C 0.112 3.888 5 N -0.608 5.608 6 C 0.072 3.928 7 C 0.502 3.498 8 O -0.588 6.588 9 C -0.124 4.124 10 C -0.108 4.108 11 C 0.064 3.936 12 O -0.343 6.343 13 C 0.073 3.927 14 C -0.186 4.186 15 C -0.081 4.081 16 C -0.126 4.126 17 C -0.118 4.118 18 C 0.021 3.979 19 F -0.157 7.157 20 N -0.756 5.756 21 C -0.207 4.207 22 H 0.066 0.934 23 C -0.052 4.052 24 N -0.979 5.979 25 Si 0.931 3.069 26 H -0.283 1.283 27 H -0.304 1.304 28 H -0.275 1.275 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.160 0.840 44 H 0.169 0.831 45 H 0.169 0.831 46 H 0.158 0.842 47 H 0.372 0.628 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.172 -3.701 -19.936 28.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.073 0.927 4 C -0.011 4.011 5 N -0.339 5.339 6 C -0.070 4.070 7 C 0.292 3.708 8 O -0.469 6.469 9 C -0.163 4.163 10 C -0.146 4.146 11 C -0.010 4.010 12 O -0.257 6.257 13 C 0.027 3.973 14 C -0.204 4.204 15 C -0.099 4.099 16 C -0.144 4.144 17 C -0.136 4.136 18 C 0.001 3.999 19 F -0.136 7.136 20 N -0.403 5.403 21 C -0.338 4.338 22 H 0.084 0.916 23 C -0.243 4.243 24 N -0.631 5.631 25 Si 0.763 3.237 26 H -0.210 1.210 27 H -0.232 1.232 28 H -0.201 1.201 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.127 0.873 38 H 0.161 0.839 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.178 0.822 44 H 0.187 0.813 45 H 0.187 0.813 46 H 0.175 0.825 47 H 0.209 0.791 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.604 -4.112 -19.529 27.975 hybrid contribution -0.621 -1.330 1.170 1.877 sum 18.982 -5.441 -18.359 26.962 Atomic orbital electron populations 1.22247 0.97172 1.00842 1.01427 1.20995 0.93194 0.95876 0.86091 0.92750 1.21838 0.79801 1.01403 0.98103 1.47817 1.07122 1.21293 1.57674 1.22095 0.95465 0.89928 0.99470 1.21142 0.91814 0.81356 0.76465 1.90649 1.66189 1.42198 1.47839 1.21543 0.91120 0.98509 1.05166 1.21226 0.93998 0.98612 1.00773 1.22984 0.94952 0.84496 0.98541 1.86110 1.20992 1.42960 1.75675 1.19454 0.84009 0.95043 0.98819 1.21557 0.93734 1.00450 1.04677 1.21536 0.94760 0.97464 0.96158 1.21410 1.00978 0.93582 0.98409 1.21355 0.88921 1.02426 1.00932 1.17694 0.88074 0.88997 1.05138 1.91441 1.67600 1.67701 1.86881 1.43257 1.79535 1.10529 1.06979 1.19102 1.32988 0.94418 0.87311 0.91590 1.25077 1.03570 0.99926 0.95758 1.69819 1.55815 1.36663 1.00829 0.85793 0.78761 0.83834 0.75339 1.20999 1.23161 1.20054 0.94242 0.94864 0.89618 0.85705 0.92059 0.89384 0.90259 0.90164 0.87261 0.83907 0.91147 0.94918 0.90373 0.87826 0.82219 0.81317 0.81317 0.82474 0.79076 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 9.49 71.98 0.68 -4.65 16 2 C 0.15 5.49 3.19 44.99 0.14 5.63 16 3 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 4 C 0.11 3.23 5.14 86.38 0.44 3.67 16 5 N -0.61 -16.68 2.77 -846.78 -2.35 -19.03 16 6 C 0.07 1.17 10.24 127.77 1.31 2.48 16 7 C 0.50 16.81 6.97 87.66 0.61 17.42 16 8 O -0.59 -25.97 13.14 -3.05 -0.04 -26.01 16 9 C -0.12 -2.96 4.25 29.85 0.13 -2.83 16 10 C -0.11 -3.23 4.87 30.59 0.15 -3.08 16 11 C 0.06 1.47 4.74 71.98 0.34 1.81 16 12 O -0.34 -10.58 10.00 -93.06 -0.93 -11.51 16 13 C 0.07 1.88 6.69 22.53 0.15 2.03 16 14 C -0.19 -3.16 9.04 22.36 0.20 -2.95 16 15 C -0.08 -0.95 10.04 22.26 0.22 -0.73 16 16 C -0.13 -1.51 10.04 22.28 0.22 -1.28 16 17 C -0.12 -2.10 10.02 22.29 0.22 -1.88 16 18 C 0.02 0.55 7.31 22.45 0.16 0.71 16 19 F -0.16 -5.11 17.11 44.97 0.77 -4.34 16 20 N -0.76 -37.91 4.33 -322.95 -1.40 -39.30 16 21 C -0.21 -12.27 10.41 84.03 0.87 -11.40 16 22 H 0.07 4.15 8.06 -2.91 -0.02 4.12 16 23 C -0.05 -3.27 5.50 84.86 0.47 -2.81 16 24 N -0.98 -65.68 13.97 21.65 0.30 -65.38 16 25 Si 0.93 53.61 27.58 68.60 1.89 55.50 16 26 H -0.28 -16.05 6.69 99.48 0.67 -15.39 16 27 H -0.30 -17.61 7.11 99.48 0.71 -16.90 16 28 H -0.27 -15.99 6.52 99.48 0.65 -15.34 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.13 2.37 8.07 -2.39 -0.02 2.35 16 33 H 0.06 2.03 7.42 -2.39 -0.02 2.01 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.22 8.07 -2.38 -0.02 1.20 16 36 H 0.08 1.16 6.44 -2.39 -0.02 1.15 16 37 H 0.11 2.39 7.40 -2.39 -0.02 2.37 16 38 H 0.14 1.91 8.11 -2.39 -0.02 1.89 16 39 H 0.07 2.21 8.10 -2.38 -0.02 2.19 16 40 H 0.03 1.31 7.68 -2.39 -0.02 1.29 16 41 H 0.08 1.57 7.66 -2.39 -0.02 1.55 16 42 H 0.10 1.52 7.66 -2.39 -0.02 1.50 16 43 H 0.16 1.88 6.30 -2.91 -0.02 1.86 16 44 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 45 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 47 H 0.37 19.66 2.88 -92.71 -0.27 19.39 16 48 H 0.25 16.49 8.31 -92.71 -0.77 15.72 16 Total: -1.00 -91.00 394.17 5.17 -85.82 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.59 Total: 22.09 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 6.34 Total: 2.14 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -3.44 Total: -123.71 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.97 Total: -37.52 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.77 Total: -4.34 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 1.89 Total: 55.50 kcal Total: -91.00 5.17 -85.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278026625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.375 kcal (2) G-P(sol) polarization free energy of solvation -90.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds