Wall clock time and date at job start Tue Mar 31 2020 20:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00154 * 2 1 4 4 H 1.09005 * 109.47246 * 304.99703 * 3 2 1 5 5 C 1.52997 * 109.47329 * 64.99585 * 3 2 1 6 6 C 1.52996 * 109.47072 * 184.99935 * 3 2 1 7 7 C 1.52999 * 109.47319 * 64.99663 * 6 3 2 8 8 N 1.46900 * 109.47167 * 180.02562 * 7 6 3 9 9 C 1.48095 * 111.00268 * 170.00362 * 8 7 6 10 10 C 1.53283 * 85.92645 * 222.87220 * 9 8 7 11 11 C 1.52335 * 128.80609 * 243.48068 * 10 9 8 12 12 C 1.52337 * 128.80807 * 163.13919 * 10 9 8 13 13 H 1.09000 * 117.55545 * 225.29882 * 12 10 9 14 14 C 1.50699 * 117.51393 * 10.43754 * 12 10 9 15 15 O 1.21285 * 119.99879 * 359.82052 * 14 12 10 16 16 N 1.34775 * 120.00193 * 179.81435 * 14 12 10 17 17 C 1.47580 * 134.49629 * 180.02562 * 16 14 12 18 18 C 1.53946 * 86.24073 * 155.42618 * 17 16 14 19 19 C 1.50699 * 113.74034 * 137.89610 * 18 17 16 20 20 H 1.08005 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00116 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00066 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46987 * 120.00122 * 23 21 19 26 26 H 1.48500 * 109.47371 * 239.99690 * 23 21 19 27 27 C 1.47812 * 134.57995 * 359.95741 * 16 14 12 28 28 C 1.48094 * 111.00394 * 70.40971 * 8 7 6 29 29 H 1.09009 * 109.46918 * 60.00106 * 1 2 3 30 30 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47130 * 300.00777 * 1 2 3 32 32 H 1.09002 * 109.47285 * 300.00392 * 5 3 2 33 33 H 1.09005 * 109.46859 * 59.99882 * 5 3 2 34 34 H 1.08999 * 109.46879 * 179.97438 * 5 3 2 35 35 H 1.09008 * 109.47329 * 304.99498 * 6 3 2 36 36 H 1.09005 * 109.47037 * 184.99723 * 6 3 2 37 37 H 1.09002 * 109.47314 * 60.00312 * 7 6 3 38 38 H 1.08996 * 109.47029 * 299.99718 * 7 6 3 39 39 H 1.09003 * 113.80436 * 108.61911 * 9 8 7 40 40 H 1.09006 * 113.90857 * 337.13623 * 9 8 7 41 41 H 1.08999 * 117.52117 * 134.67821 * 11 10 9 42 42 H 1.08998 * 117.51454 * 349.55271 * 11 10 9 43 43 H 1.09002 * 113.76914 * 41.06930 * 17 16 14 44 44 H 1.09000 * 113.77064 * 269.78402 * 17 16 14 45 45 H 1.08995 * 113.74143 * 269.20333 * 18 17 16 46 46 H 0.97003 * 119.99565 * 180.02562 * 22 21 19 47 47 H 1.08996 * 113.67199 * 90.26545 * 27 16 14 48 48 H 1.08996 * 113.93703 * 318.91196 * 27 16 14 49 49 H 1.09005 * 113.79517 * 22.87928 * 28 8 7 50 50 H 1.08994 * 113.80630 * 251.37522 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4016 1.3073 6 6 3.7370 1.9411 -0.1257 7 6 4.1989 1.4190 -1.4876 8 7 5.6535 1.5851 -1.6080 9 6 6.1712 0.8798 -2.8029 10 6 7.3165 0.4140 -1.8968 11 6 8.8046 0.7213 -2.0047 12 6 8.3065 -0.7226 -2.1174 13 1 8.5032 -1.3900 -1.2784 14 6 8.3365 -1.3651 -3.4802 15 8 7.5875 -0.9755 -4.3509 16 7 9.1957 -2.3726 -3.7315 17 6 9.4922 -3.2093 -4.9105 18 6 10.8849 -3.4153 -4.2878 19 6 11.3891 -4.8322 -4.3840 20 1 10.7827 -5.5901 -4.8577 21 6 12.6239 -5.1612 -3.8664 22 7 13.3616 -4.2386 -3.2883 23 14 13.2491 -6.9174 -3.9863 24 1 12.2371 -7.7571 -4.6763 25 1 14.5190 -6.9393 -4.7557 26 1 13.4879 -7.4521 -2.6216 27 6 10.2211 -3.0837 -2.9392 28 6 6.3707 0.6479 -0.7133 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.6635 2.2779 1.3968 33 1 2.2353 1.9149 2.1491 34 1 1.9884 3.4636 1.3074 35 1 4.2339 1.3803 0.6660 36 1 3.9902 2.9976 -0.0366 37 1 3.7021 1.9797 -2.2794 38 1 3.9457 0.3626 -1.5767 39 1 6.4881 1.5468 -3.6047 40 1 5.5290 0.0708 -3.1512 41 1 9.3281 1.0037 -1.0913 42 1 9.1538 1.2061 -2.9164 43 1 9.5081 -2.6558 -5.8493 44 1 8.8958 -4.1202 -4.9639 45 1 11.6217 -2.6782 -4.6071 46 1 14.2305 -4.4701 -2.9245 47 1 9.8383 -3.9571 -2.4114 48 1 10.8199 -2.4313 -2.3036 49 1 5.7867 -0.2299 -0.4368 50 1 6.8457 1.1313 0.1404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278063783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:15 Heat of formation + Delta-G solvation = 51.630891 kcal Electronic energy + Delta-G solvation = -26556.998935 eV Core-core repulsion = 22906.339909 eV Total energy + Delta-G solvation = -3650.659026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53294 -39.05314 -37.13139 -35.98023 -34.36055 -32.66419 -30.52412 -29.24263 -28.88926 -26.39701 -25.70420 -25.27006 -25.06349 -23.08063 -22.29339 -21.37150 -20.10167 -18.69777 -17.85209 -17.03727 -16.89555 -16.33935 -15.97790 -15.77340 -15.24247 -15.05814 -14.80526 -14.59471 -14.42435 -14.24946 -13.88124 -13.52848 -13.28875 -13.14463 -13.04549 -12.98945 -12.53212 -12.35478 -12.19646 -11.92568 -11.78113 -11.57606 -11.54789 -11.38906 -11.22615 -11.10270 -10.96645 -10.78092 -10.60906 -10.40542 -10.17798 -10.12392 -10.03767 -9.56312 -9.28129 -8.95926 -8.74348 -8.58489 -7.99211 -7.82268 -6.18459 -4.23843 1.32415 2.21673 2.96802 3.22491 3.31477 3.34825 3.48787 3.70452 4.08852 4.31034 4.32319 4.38512 4.44112 4.64395 4.72024 4.75311 4.84660 4.91090 4.94289 5.05664 5.12173 5.16130 5.26990 5.27419 5.33671 5.40539 5.44549 5.50655 5.53748 5.64816 5.70963 5.74155 5.79469 5.87097 5.98702 6.03789 6.09135 6.12770 6.23004 6.27823 6.31233 6.40406 6.59803 6.69111 6.84388 7.00484 7.55710 7.79444 8.17280 8.54341 8.80005 8.81722 9.43040 10.91193 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.001904 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.713857 B =14703.622149 C =15235.257202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.258 6.258 3 C -0.055 4.055 4 H 0.087 0.913 5 C -0.147 4.147 6 C -0.094 4.094 7 C 0.018 3.982 8 N -0.481 5.481 9 C 0.065 3.935 10 C -0.136 4.136 11 C -0.111 4.111 12 C -0.165 4.165 13 H 0.120 0.880 14 C 0.554 3.446 15 O -0.564 6.564 16 N -0.636 5.636 17 C 0.103 3.897 18 C 0.033 3.967 19 C -0.518 4.518 20 H 0.063 0.937 21 C 0.067 3.933 22 N -0.886 5.886 23 Si 0.895 3.105 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.105 3.895 28 C 0.044 3.956 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.263 0.737 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.454 12.826 9.905 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.032 6.032 3 C -0.185 4.185 4 H 0.105 0.895 5 C -0.206 4.206 6 C -0.133 4.133 7 C -0.111 4.111 8 N -0.203 5.203 9 C -0.063 4.063 10 C -0.138 4.138 11 C -0.149 4.149 12 C -0.187 4.187 13 H 0.138 0.862 14 C 0.343 3.657 15 O -0.445 6.445 16 N -0.369 5.369 17 C -0.019 4.019 18 C 0.014 3.986 19 C -0.556 4.556 20 H 0.081 0.919 21 C -0.136 4.136 22 N -0.523 5.523 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.018 4.018 28 C -0.084 4.084 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.064 13.043 9.635 25.797 hybrid contribution -0.704 -0.937 0.085 1.175 sum -20.767 12.105 9.720 25.929 Atomic orbital electron populations 1.23401 0.94727 1.06424 1.04723 1.87091 1.06889 1.11388 1.97842 1.23189 1.00280 0.93660 1.01333 0.89471 1.22074 1.01109 1.01086 0.96317 1.21379 0.91158 1.02800 0.97950 1.22723 0.90396 1.00630 0.97366 1.68572 1.04717 1.42297 1.04709 1.23296 0.93242 0.96418 0.93330 1.22520 0.91382 1.01420 0.98447 1.22707 0.93644 0.94771 1.03767 1.22138 1.06503 0.92426 0.97594 0.86167 1.19207 0.78758 0.79910 0.87796 1.90609 1.41666 1.64729 1.47498 1.50428 1.36532 1.32159 1.17816 1.23483 0.97725 0.91720 0.88926 1.20496 0.90236 0.98156 0.89702 1.21013 1.02458 0.93477 1.38688 0.91850 1.25029 0.96434 0.97484 0.94678 1.69961 1.11672 1.32955 1.37719 0.86492 0.78891 0.84532 0.77852 1.19587 1.20884 1.20921 1.23746 0.85810 0.93266 0.98939 1.23509 0.94204 0.95139 0.95564 0.90614 0.88186 0.90587 0.92605 0.91265 0.91514 0.90951 0.89711 0.90690 0.92785 0.89190 0.90381 0.87618 0.87989 0.92156 0.90921 0.91724 0.92710 0.90834 0.91721 0.90800 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.45 101.05 1.06 0.30 16 2 S -0.26 -2.32 20.60 -107.50 -2.21 -4.53 16 3 C -0.06 -0.40 2.82 -26.73 -0.08 -0.48 16 4 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 5 C -0.15 -0.86 9.10 37.16 0.34 -0.52 16 6 C -0.09 -0.78 4.74 -26.73 -0.13 -0.91 16 7 C 0.02 0.18 4.64 -3.82 -0.02 0.16 16 8 N -0.48 -5.75 6.26 -241.64 -1.51 -7.27 16 9 C 0.06 0.92 6.41 -3.02 -0.02 0.90 16 10 C -0.14 -1.88 3.03 -154.98 -0.47 -2.35 16 11 C -0.11 -1.51 10.24 -26.99 -0.28 -1.79 16 12 C -0.16 -2.59 5.95 -92.03 -0.55 -3.14 16 13 H 0.12 1.76 8.14 -51.93 -0.42 1.33 16 14 C 0.55 10.92 7.84 -10.99 -0.09 10.84 16 15 O -0.56 -12.36 15.86 5.55 0.09 -12.28 16 16 N -0.64 -13.11 3.62 -177.44 -0.64 -13.75 16 17 C 0.10 2.18 8.38 -2.97 -0.02 2.15 16 18 C 0.03 0.78 3.62 -90.84 -0.33 0.45 16 19 C -0.52 -13.17 8.77 -34.44 -0.30 -13.48 16 20 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 21 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -23.97 13.27 55.43 0.74 -23.23 16 23 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.10 2.20 8.18 -2.86 -0.02 2.18 16 28 C 0.04 0.51 7.11 -3.02 -0.02 0.49 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.38 7.14 -51.92 -0.37 0.01 16 32 H 0.05 0.29 6.92 -51.93 -0.36 -0.07 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.64 7.54 -51.92 -0.39 0.25 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.62 6.70 -51.93 -0.35 0.28 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.20 7.67 -51.93 -0.40 0.80 16 41 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 45 H 0.06 1.65 8.13 -51.93 -0.42 1.23 16 46 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 47 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 48 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 415.38 15.07 6.26 6.26 Total: -1.00 -28.64 415.38 -12.33 -40.97 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -9.00 Total: 2.36 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.02 Total: -3.55 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -1.42 Total: -44.25 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.21 Total: -4.53 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -28.64 -12.33 -40.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278063783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.599 kcal (2) G-P(sol) polarization free energy of solvation -28.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds