Wall clock time and date at job start Tue Mar 31 2020 20:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00154 * 2 1 4 4 H 1.09005 * 109.47246 * 304.99703 * 3 2 1 5 5 C 1.52997 * 109.47329 * 64.99585 * 3 2 1 6 6 C 1.52996 * 109.47072 * 184.99935 * 3 2 1 7 7 C 1.52999 * 109.47319 * 64.99663 * 6 3 2 8 8 N 1.46900 * 109.47167 * 180.02562 * 7 6 3 9 9 C 1.48095 * 111.00268 * 170.00362 * 8 7 6 10 10 C 1.53283 * 85.92645 * 222.87220 * 9 8 7 11 11 C 1.52335 * 128.80609 * 243.48068 * 10 9 8 12 12 C 1.52337 * 128.80807 * 163.13919 * 10 9 8 13 13 H 1.09000 * 117.55545 * 225.29882 * 12 10 9 14 14 C 1.50699 * 117.51393 * 10.43754 * 12 10 9 15 15 O 1.21285 * 119.99879 * 359.82052 * 14 12 10 16 16 N 1.34775 * 120.00193 * 179.81435 * 14 12 10 17 17 C 1.47580 * 134.49629 * 180.02562 * 16 14 12 18 18 C 1.53946 * 86.24073 * 155.42618 * 17 16 14 19 19 C 1.50699 * 113.74034 * 137.89610 * 18 17 16 20 20 H 1.08005 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00116 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99968 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00066 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46987 * 120.00122 * 23 21 19 26 26 H 1.48500 * 109.47371 * 239.99690 * 23 21 19 27 27 C 1.47812 * 134.57995 * 359.95741 * 16 14 12 28 28 C 1.48094 * 111.00394 * 70.40971 * 8 7 6 29 29 H 1.09009 * 109.46918 * 60.00106 * 1 2 3 30 30 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47130 * 300.00777 * 1 2 3 32 32 H 1.09002 * 109.47285 * 300.00392 * 5 3 2 33 33 H 1.09005 * 109.46859 * 59.99882 * 5 3 2 34 34 H 1.08999 * 109.46879 * 179.97438 * 5 3 2 35 35 H 1.09008 * 109.47329 * 304.99498 * 6 3 2 36 36 H 1.09005 * 109.47037 * 184.99723 * 6 3 2 37 37 H 1.09002 * 109.47314 * 60.00312 * 7 6 3 38 38 H 1.08996 * 109.47029 * 299.99718 * 7 6 3 39 39 H 1.09003 * 113.80436 * 108.61911 * 9 8 7 40 40 H 1.09006 * 113.90857 * 337.13623 * 9 8 7 41 41 H 1.08999 * 117.52117 * 134.67821 * 11 10 9 42 42 H 1.08998 * 117.51454 * 349.55271 * 11 10 9 43 43 H 1.09002 * 113.76914 * 41.06930 * 17 16 14 44 44 H 1.09000 * 113.77064 * 269.78402 * 17 16 14 45 45 H 1.08995 * 113.74143 * 269.20333 * 18 17 16 46 46 H 0.97003 * 119.99565 * 180.02562 * 22 21 19 47 47 H 1.08996 * 113.67199 * 90.26545 * 27 16 14 48 48 H 1.08996 * 113.93703 * 318.91196 * 27 16 14 49 49 H 1.09005 * 113.79517 * 22.87928 * 28 8 7 50 50 H 1.08994 * 113.80630 * 251.37522 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4016 1.3073 6 6 3.7370 1.9411 -0.1257 7 6 4.1989 1.4190 -1.4876 8 7 5.6535 1.5851 -1.6080 9 6 6.1712 0.8798 -2.8029 10 6 7.3165 0.4140 -1.8968 11 6 8.8046 0.7213 -2.0047 12 6 8.3065 -0.7226 -2.1174 13 1 8.5032 -1.3900 -1.2784 14 6 8.3365 -1.3651 -3.4802 15 8 7.5875 -0.9755 -4.3509 16 7 9.1957 -2.3726 -3.7315 17 6 9.4922 -3.2093 -4.9105 18 6 10.8849 -3.4153 -4.2878 19 6 11.3891 -4.8322 -4.3840 20 1 10.7827 -5.5901 -4.8577 21 6 12.6239 -5.1612 -3.8664 22 7 13.3616 -4.2386 -3.2883 23 14 13.2491 -6.9174 -3.9863 24 1 12.2371 -7.7571 -4.6763 25 1 14.5190 -6.9393 -4.7557 26 1 13.4879 -7.4521 -2.6216 27 6 10.2211 -3.0837 -2.9392 28 6 6.3707 0.6479 -0.7133 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 0.6635 2.2779 1.3968 33 1 2.2353 1.9149 2.1491 34 1 1.9884 3.4636 1.3074 35 1 4.2339 1.3803 0.6660 36 1 3.9902 2.9976 -0.0366 37 1 3.7021 1.9797 -2.2794 38 1 3.9457 0.3626 -1.5767 39 1 6.4881 1.5468 -3.6047 40 1 5.5290 0.0708 -3.1512 41 1 9.3281 1.0037 -1.0913 42 1 9.1538 1.2061 -2.9164 43 1 9.5081 -2.6558 -5.8493 44 1 8.8958 -4.1202 -4.9639 45 1 11.6217 -2.6782 -4.6071 46 1 14.2305 -4.4701 -2.9245 47 1 9.8383 -3.9571 -2.4114 48 1 10.8199 -2.4313 -2.3036 49 1 5.7867 -0.2299 -0.4368 50 1 6.8457 1.1313 0.1404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278063783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:14 Heat of formation + Delta-G solvation = 35.948769 kcal Electronic energy + Delta-G solvation = -26557.678963 eV Core-core repulsion = 22906.339909 eV Total energy + Delta-G solvation = -3651.339054 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.71716 -40.56890 -38.66968 -36.91852 -35.33468 -34.61696 -31.36854 -30.79006 -29.49403 -27.52243 -27.21771 -26.84660 -26.22586 -24.49344 -23.03417 -22.23497 -21.69966 -19.98770 -19.27430 -18.77783 -18.00649 -17.59793 -17.05977 -16.76188 -16.59110 -16.48107 -16.02414 -15.81683 -15.51736 -15.15905 -14.89156 -14.53893 -14.38184 -14.10240 -14.04259 -13.86643 -13.73104 -13.51443 -13.34088 -13.30448 -13.12625 -12.97451 -12.77464 -12.56750 -12.50416 -12.23219 -12.22203 -12.11451 -11.89014 -11.64144 -11.37633 -11.22990 -11.16939 -11.12351 -10.71600 -10.66296 -10.49299 -9.79508 -9.52836 -8.67308 -8.16129 -6.27071 0.75469 1.45754 1.49147 1.50349 1.59817 1.66664 1.95589 2.46231 2.58233 3.04400 3.14308 3.18304 3.46901 3.67702 3.74063 3.84416 3.90537 4.11867 4.17970 4.28549 4.30145 4.32237 4.33882 4.42773 4.45154 4.47791 4.49806 4.57893 4.64037 4.65366 4.65718 4.74518 4.78228 4.78966 4.84037 4.87803 4.90306 4.95117 4.98126 5.00641 5.06528 5.10471 5.14915 5.24769 5.35458 5.60113 5.82125 6.03141 6.23232 6.80888 6.90713 7.20252 7.42872 8.93757 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.001904 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.713857 B =14703.622149 C =15235.257202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.322 6.322 3 C -0.042 4.042 4 H 0.092 0.908 5 C -0.143 4.143 6 C -0.086 4.086 7 C 0.021 3.979 8 N -0.477 5.477 9 C 0.061 3.939 10 C -0.135 4.135 11 C -0.098 4.098 12 C -0.181 4.181 13 H 0.134 0.866 14 C 0.548 3.452 15 O -0.591 6.591 16 N -0.640 5.640 17 C 0.107 3.893 18 C 0.023 3.977 19 C -0.530 4.530 20 H 0.064 0.936 21 C 0.021 3.979 22 N -0.917 5.917 23 Si 0.957 3.043 24 H -0.266 1.266 25 H -0.283 1.283 26 H -0.279 1.279 27 C 0.121 3.879 28 C 0.055 3.945 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.136 0.864 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.265 0.735 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.476 13.434 11.620 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.097 6.097 3 C -0.171 4.171 4 H 0.110 0.890 5 C -0.201 4.201 6 C -0.125 4.125 7 C -0.108 4.108 8 N -0.199 5.199 9 C -0.067 4.067 10 C -0.136 4.136 11 C -0.135 4.135 12 C -0.202 4.202 13 H 0.152 0.848 14 C 0.340 3.660 15 O -0.473 6.473 16 N -0.373 5.373 17 C -0.015 4.015 18 C 0.004 3.996 19 C -0.568 4.568 20 H 0.082 0.918 21 C -0.179 4.179 22 N -0.555 5.555 23 Si 0.783 3.217 24 H -0.190 1.190 25 H -0.209 1.209 26 H -0.205 1.205 27 C -0.001 4.001 28 C -0.073 4.073 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.154 0.846 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -21.101 13.656 11.355 27.581 hybrid contribution -0.448 -1.080 -0.525 1.282 sum -21.549 12.576 10.830 27.200 Atomic orbital electron populations 1.23412 0.91703 1.07032 1.05739 1.87306 1.10408 1.13991 1.98005 1.23153 0.99502 0.91941 1.02472 0.88984 1.22042 1.01547 1.01515 0.95045 1.21315 0.91878 1.03042 0.96242 1.22714 0.89309 0.99948 0.98809 1.68569 1.05823 1.41880 1.03621 1.23179 0.93675 0.95914 0.93953 1.22703 0.91633 0.99737 0.99521 1.22837 0.93641 0.92365 1.04686 1.22110 1.09253 0.93521 0.95345 0.84803 1.19912 0.77762 0.79174 0.89160 1.90592 1.42566 1.65267 1.48910 1.50432 1.36951 1.32564 1.17333 1.23367 0.96521 0.92321 0.89273 1.20399 0.90669 0.96731 0.91820 1.21285 1.02775 0.94294 1.38426 0.91805 1.25742 0.96674 1.01049 0.94459 1.70058 1.12041 1.34703 1.38672 0.85513 0.78151 0.80195 0.77825 1.19018 1.20928 1.20507 1.23478 0.85510 0.93436 0.97683 1.23534 0.93217 0.95205 0.95311 0.89869 0.87826 0.89237 0.91786 0.91753 0.90259 0.91330 0.88718 0.90653 0.94208 0.90362 0.92258 0.84554 0.89028 0.92157 0.90140 0.94532 0.92627 0.90380 0.91460 0.90815 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.45 113.37 1.19 0.00 16 2 S -0.32 -5.58 20.60 -56.49 -1.16 -6.74 16 3 C -0.04 -0.54 2.82 30.59 0.09 -0.46 16 4 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 5 C -0.14 -1.34 9.10 71.98 0.66 -0.69 16 6 C -0.09 -1.28 4.74 30.59 0.15 -1.14 16 7 C 0.02 0.41 4.64 86.30 0.40 0.82 16 8 N -0.48 -10.86 6.26 -918.40 -5.75 -16.61 16 9 C 0.06 1.73 6.41 86.17 0.55 2.28 16 10 C -0.13 -3.56 3.03 -52.40 -0.16 -3.72 16 11 C -0.10 -2.50 10.24 30.43 0.31 -2.19 16 12 C -0.18 -5.50 5.95 -11.71 -0.07 -5.57 16 13 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 14 C 0.55 21.70 7.84 87.66 0.69 22.38 16 15 O -0.59 -26.34 15.86 -3.05 -0.05 -26.39 16 16 N -0.64 -26.46 3.62 -833.68 -3.02 -29.48 16 17 C 0.11 4.58 8.38 86.48 0.72 5.31 16 18 C 0.02 1.10 3.62 -10.89 -0.04 1.06 16 19 C -0.53 -27.02 8.77 25.60 0.22 -26.79 16 20 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 21 C 0.02 1.09 5.46 84.65 0.46 1.55 16 22 N -0.92 -49.83 13.27 21.45 0.28 -49.55 16 23 Si 0.96 40.89 29.54 68.60 2.03 42.92 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 27 C 0.12 5.09 8.18 86.43 0.71 5.80 16 28 C 0.06 1.18 7.11 86.17 0.61 1.79 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 0.71 7.14 -2.39 -0.02 0.70 16 32 H 0.06 0.51 6.92 -2.39 -0.02 0.49 16 33 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 1.10 7.54 -2.38 -0.02 1.08 16 36 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.04 0.92 6.70 -2.39 -0.02 0.91 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.06 1.89 7.67 -2.38 -0.02 1.87 16 41 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.08 3.29 8.09 -2.39 -0.02 3.27 16 45 H 0.04 1.93 8.13 -2.39 -0.02 1.91 16 46 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 47 H 0.08 3.21 8.09 -2.39 -0.02 3.19 16 48 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 49 H 0.07 1.60 7.79 -2.38 -0.02 1.58 16 50 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -61.62 415.38 -0.29 -61.90 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.89 Total: 23.51 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 6.49 Total: 0.43 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -8.48 Total: -95.63 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -1.16 Total: -6.74 kcal Total: -61.62 -0.29 -61.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278063783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.854 kcal (2) G-P(sol) polarization free energy of solvation -61.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds