Wall clock time and date at job start Tue Mar 31 2020 20:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81404 * 103.00022 * 2 1 4 4 H 1.09003 * 109.46505 * 305.00099 * 3 2 1 5 5 C 1.53007 * 109.46918 * 64.99373 * 3 2 1 6 6 C 1.52989 * 109.47622 * 184.99858 * 3 2 1 7 7 C 1.53004 * 109.47237 * 64.99925 * 6 3 2 8 8 N 1.46893 * 109.47467 * 180.02562 * 7 6 3 9 9 C 1.48101 * 111.00409 * 169.99986 * 8 7 6 10 10 C 1.53290 * 85.92583 * 222.87726 * 9 8 7 11 11 C 1.52338 * 128.79966 * 243.47948 * 10 9 8 12 12 C 1.52335 * 128.80560 * 163.14376 * 10 9 8 13 13 H 1.08998 * 117.55401 * 10.45550 * 12 10 9 14 14 C 1.50700 * 117.51669 * 225.31083 * 12 10 9 15 15 O 1.21283 * 119.99803 * 0.18274 * 14 12 10 16 16 N 1.34777 * 119.99675 * 180.46150 * 14 12 10 17 17 C 1.47062 * 136.06053 * 359.34957 * 16 14 12 18 18 C 1.53238 * 88.08347 * 207.20712 * 17 16 14 19 19 C 1.50700 * 114.32516 * 220.46865 * 18 17 16 20 20 H 1.07998 * 120.00054 * 93.76145 * 19 18 17 21 21 C 1.37875 * 119.99983 * 273.75913 * 19 18 17 22 22 N 1.31519 * 120.00349 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99882 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47090 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47182 * 120.00223 * 23 21 19 26 26 H 1.48499 * 109.47181 * 240.00180 * 23 21 19 27 27 C 1.47070 * 136.05212 * 179.73146 * 16 14 12 28 28 C 1.48102 * 111.00232 * 70.41071 * 8 7 6 29 29 H 1.08995 * 109.47331 * 299.99949 * 1 2 3 30 30 H 1.09000 * 109.46962 * 60.00553 * 1 2 3 31 31 H 1.09005 * 109.46449 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46821 * 180.02562 * 5 3 2 33 33 H 1.08994 * 109.47436 * 300.00247 * 5 3 2 34 34 H 1.09000 * 109.46841 * 60.00470 * 5 3 2 35 35 H 1.09004 * 109.47220 * 305.00021 * 6 3 2 36 36 H 1.08999 * 109.47296 * 184.99949 * 6 3 2 37 37 H 1.08995 * 109.47150 * 59.99837 * 7 6 3 38 38 H 1.08999 * 109.46997 * 300.00207 * 7 6 3 39 39 H 1.08993 * 113.80122 * 108.62197 * 9 8 7 40 40 H 1.09002 * 113.90315 * 337.13907 * 9 8 7 41 41 H 1.09009 * 117.51354 * 134.67818 * 11 10 9 42 42 H 1.08999 * 117.55095 * 349.54728 * 11 10 9 43 43 H 1.09003 * 113.46714 * 321.94524 * 17 16 14 44 44 H 1.09000 * 113.46503 * 92.37692 * 17 16 14 45 45 H 1.09007 * 114.01505 * 87.72004 * 18 17 16 46 46 H 0.96992 * 119.99937 * 179.97438 * 22 21 19 47 47 H 1.09000 * 113.46340 * 267.61114 * 27 16 14 48 48 H 1.08998 * 113.47118 * 37.99715 * 27 16 14 49 49 H 1.09004 * 113.80205 * 22.87697 * 28 8 7 50 50 H 1.09002 * 113.80332 * 251.38162 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7426 2.4016 1.3074 6 6 3.7369 1.9413 -0.1257 7 6 4.1989 1.4193 -1.4877 8 7 5.6534 1.5856 -1.6082 9 6 6.1712 0.8803 -2.8031 10 6 7.3164 0.4145 -1.8969 11 6 8.8046 0.7220 -2.0049 12 6 8.3066 -0.7220 -2.1176 13 1 8.3291 -1.1869 -3.1031 14 6 8.5776 -1.6444 -0.9571 15 8 8.0128 -1.4690 0.1017 16 7 9.4519 -2.6609 -1.0943 17 6 10.3005 -3.1896 -2.1728 18 6 10.2074 -4.5643 -1.5022 19 6 11.4977 -5.3429 -1.5008 20 1 12.1629 -5.2842 -0.6520 21 6 11.8290 -6.1302 -2.5831 22 7 11.0192 -6.2014 -3.6170 23 14 13.4281 -7.0959 -2.5810 24 1 14.1556 -6.8459 -1.3107 25 1 13.1311 -8.5455 -2.7049 26 1 14.2691 -6.6632 -3.7258 27 6 9.9721 -3.7337 -0.2331 28 6 6.3707 0.6484 -0.7134 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.9874 3.4638 1.3071 33 1 0.6634 2.2779 1.3969 34 1 2.2352 1.9150 2.1492 35 1 4.2339 1.3806 0.6660 36 1 3.9900 2.9978 -0.0366 37 1 3.7019 1.9800 -2.2793 38 1 3.9457 0.3629 -1.5768 39 1 6.4879 1.5473 -3.6047 40 1 5.5289 0.0713 -3.1512 41 1 9.3280 1.0044 -1.0914 42 1 9.1544 1.2066 -2.9164 43 1 9.8275 -3.1540 -3.1542 44 1 11.3085 -2.7749 -2.1748 45 1 9.3462 -5.1539 -1.8167 46 1 11.2525 -6.7550 -4.3785 47 1 10.8918 -3.4654 0.2867 48 1 9.2208 -4.1591 0.4322 49 1 5.7869 -0.2296 -0.4368 50 1 6.8456 1.1317 0.1404 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278063784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:19 Heat of formation + Delta-G solvation = 39.174928 kcal Electronic energy + Delta-G solvation = -26672.374146 eV Core-core repulsion = 23021.174990 eV Total energy + Delta-G solvation = -3651.199157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74387 -40.69025 -38.78614 -36.94117 -35.34513 -34.64423 -31.40088 -30.84838 -29.50153 -27.46734 -27.29273 -26.72455 -26.26842 -24.54548 -23.06128 -22.22438 -21.76809 -20.03619 -19.32009 -18.74721 -18.06774 -17.62725 -17.05292 -16.75401 -16.63540 -16.30529 -16.12771 -15.85073 -15.55353 -15.16633 -14.87434 -14.62857 -14.33827 -14.17352 -14.12093 -13.89238 -13.77461 -13.49946 -13.29554 -13.23502 -13.13269 -13.06259 -12.75698 -12.59352 -12.53267 -12.24694 -12.18853 -12.10064 -11.93199 -11.63039 -11.38977 -11.22685 -11.18096 -11.05999 -10.71488 -10.68067 -10.51595 -9.82043 -9.53462 -8.70423 -8.17037 -6.28241 0.74076 1.46154 1.48868 1.50690 1.60415 1.66496 1.93000 2.45552 2.59408 3.06012 3.12402 3.17193 3.49195 3.62619 3.74213 3.82803 3.90166 4.10474 4.16698 4.24576 4.29488 4.30553 4.33159 4.39031 4.42923 4.47715 4.51359 4.55104 4.62435 4.65645 4.69023 4.74669 4.75981 4.76701 4.82117 4.87338 4.89060 4.94417 4.96502 4.99895 5.05920 5.08550 5.13557 5.22024 5.34563 5.58627 5.80984 6.02817 6.22735 6.80623 6.91336 7.18935 7.41947 8.93263 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.002012 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.120227 B =13912.014686 C =14595.306336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.331 6.331 3 C -0.038 4.038 4 H 0.101 0.899 5 C -0.144 4.144 6 C -0.091 4.091 7 C 0.022 3.978 8 N -0.476 5.476 9 C 0.053 3.947 10 C -0.139 4.139 11 C -0.091 4.091 12 C -0.183 4.183 13 H 0.131 0.869 14 C 0.555 3.445 15 O -0.590 6.590 16 N -0.643 5.643 17 C 0.118 3.882 18 C 0.022 3.978 19 C -0.526 4.526 20 H 0.067 0.933 21 C 0.020 3.980 22 N -0.919 5.919 23 Si 0.960 3.040 24 H -0.264 1.264 25 H -0.284 1.284 26 H -0.279 1.279 27 C 0.105 3.895 28 C 0.064 3.936 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.037 0.963 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.140 0.860 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.265 0.735 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.053 0.947 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.831 19.586 1.543 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.106 6.106 3 C -0.167 4.167 4 H 0.120 0.880 5 C -0.203 4.203 6 C -0.129 4.129 7 C -0.107 4.107 8 N -0.198 5.198 9 C -0.075 4.075 10 C -0.140 4.140 11 C -0.128 4.128 12 C -0.204 4.204 13 H 0.149 0.851 14 C 0.347 3.653 15 O -0.472 6.472 16 N -0.376 5.376 17 C -0.005 4.005 18 C 0.002 3.998 19 C -0.564 4.564 20 H 0.085 0.915 21 C -0.180 4.180 22 N -0.557 5.557 23 Si 0.785 3.215 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.205 1.205 27 C -0.017 4.017 28 C -0.064 4.064 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.157 0.843 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.564 19.613 2.011 25.750 hybrid contribution -0.293 -1.109 -0.059 1.149 sum -16.857 18.504 1.952 25.107 Atomic orbital electron populations 1.23406 0.91357 1.07024 1.05866 1.87527 1.10727 1.14332 1.98022 1.23137 0.99200 0.91719 1.02606 0.88050 1.22054 1.01625 1.01556 0.95064 1.21322 0.92114 1.02829 0.96655 1.22716 0.89372 0.99967 0.98624 1.68577 1.05733 1.41688 1.03820 1.23561 0.92491 0.97020 0.94410 1.22742 0.91990 0.99762 0.99504 1.22860 0.93100 0.91844 1.04978 1.22075 1.09130 0.91076 0.98135 0.85081 1.19793 0.77901 0.78996 0.88653 1.90605 1.52771 1.73048 1.30796 1.49943 1.40622 1.28521 1.18506 1.23257 0.92777 0.93761 0.90675 1.20188 0.97007 0.91425 0.91136 1.21225 1.04424 1.27461 1.03340 0.91518 1.25781 1.00099 0.97004 0.95145 1.70066 1.38095 1.40322 1.07215 0.85473 0.79541 0.78052 0.78393 1.18798 1.21014 1.20451 1.23218 0.97027 0.85363 0.96124 1.23120 0.93838 0.93973 0.95454 0.89366 0.89381 0.87922 0.90054 0.91479 0.92489 0.93019 0.88617 0.89092 0.94430 0.86596 0.90694 0.88700 0.84254 0.92209 0.89987 0.94575 0.92624 0.89793 0.92916 0.92925 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.45 113.37 1.19 -0.14 16 2 S -0.33 -6.68 20.60 -56.49 -1.16 -7.85 16 3 C -0.04 -0.57 2.82 30.59 0.09 -0.48 16 4 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.14 -1.73 9.10 71.98 0.66 -1.08 16 6 C -0.09 -1.64 4.74 30.59 0.15 -1.50 16 7 C 0.02 0.44 4.64 86.31 0.40 0.84 16 8 N -0.48 -10.87 6.26 -918.30 -5.75 -16.61 16 9 C 0.05 1.13 7.99 86.17 0.69 1.82 16 10 C -0.14 -3.65 3.03 -52.40 -0.16 -3.81 16 11 C -0.09 -2.17 10.24 30.43 0.31 -1.86 16 12 C -0.18 -5.56 6.02 -11.71 -0.07 -5.63 16 13 H 0.13 3.74 8.14 -2.39 -0.02 3.72 16 14 C 0.55 22.14 7.86 87.66 0.69 22.83 16 15 O -0.59 -26.68 15.91 -3.04 -0.05 -26.73 16 16 N -0.64 -26.77 3.69 -858.82 -3.17 -29.94 16 17 C 0.12 4.97 7.98 83.09 0.66 5.63 16 18 C 0.02 1.04 3.77 -11.29 -0.04 1.00 16 19 C -0.53 -26.89 8.82 25.60 0.23 -26.66 16 20 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 21 C 0.02 1.03 5.46 84.65 0.46 1.49 16 22 N -0.92 -50.42 13.26 21.45 0.28 -50.14 16 23 Si 0.96 40.89 29.54 68.60 2.03 42.91 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.11 4.52 8.19 83.18 0.68 5.20 16 28 C 0.06 1.85 5.53 86.17 0.48 2.33 16 29 H 0.09 0.86 7.14 -2.39 -0.02 0.84 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.07 0.66 6.92 -2.39 -0.02 0.64 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 1.18 7.54 -2.38 -0.02 1.17 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 0.90 6.70 -2.39 -0.02 0.89 16 39 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 1.60 7.80 -2.39 -0.02 1.59 16 41 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 42 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.08 3.33 8.10 -2.39 -0.02 3.31 16 45 H 0.04 1.95 8.11 -2.38 -0.02 1.93 16 46 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 47 H 0.08 3.41 8.10 -2.39 -0.02 3.39 16 48 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.05 1.79 7.66 -2.38 -0.02 1.77 16 50 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -63.23 415.39 -0.53 -63.76 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.89 Total: 24.61 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.40 Total: -0.02 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -8.63 Total: -96.69 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -1.16 Total: -7.85 kcal Total: -63.23 -0.53 -63.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278063784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.937 kcal (2) G-P(sol) polarization free energy of solvation -63.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds