Wall clock time and date at job start Tue Mar 31 2020 20:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 103.00198 * 2 1 4 4 H 1.09003 * 109.46904 * 54.99714 * 3 2 1 5 5 C 1.53004 * 109.47067 * 294.99900 * 3 2 1 6 6 C 1.52993 * 109.47179 * 175.00107 * 3 2 1 7 7 C 1.53005 * 109.47095 * 294.99977 * 6 3 2 8 8 N 1.46897 * 109.47104 * 180.02562 * 7 6 3 9 9 C 1.46907 * 110.99968 * 179.97438 * 8 7 6 10 10 C 1.54412 * 129.01236 * 180.02562 * 9 8 7 11 11 C 1.54419 * 78.89086 * 180.64564 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00043 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00162 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46863 * 89.99320 * 21 19 17 23 23 H 1.48496 * 109.47186 * 209.99414 * 21 19 17 24 24 H 1.48506 * 109.46767 * 329.99535 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47170 * 300.00247 * 1 2 3 30 30 H 1.09002 * 109.47445 * 59.99786 * 1 2 3 31 31 H 1.08998 * 109.46778 * 300.00340 * 5 3 2 32 32 H 1.09004 * 109.46982 * 59.99774 * 5 3 2 33 33 H 1.08998 * 109.47051 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47412 * 175.00235 * 6 3 2 35 35 H 1.09002 * 109.47765 * 54.99811 * 6 3 2 36 36 H 1.08997 * 109.47495 * 60.00048 * 7 6 3 37 37 H 1.09002 * 109.46809 * 299.99959 * 7 6 3 38 38 H 1.00905 * 111.00263 * 56.04491 * 8 7 6 39 39 H 1.08992 * 114.93459 * 68.16028 * 10 9 8 40 40 H 1.08998 * 114.98218 * 293.12567 * 10 9 8 41 41 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 42 42 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 43 43 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 44 44 H 0.97000 * 120.00154 * 180.02562 * 20 19 17 45 45 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 46 46 H 1.09005 * 113.76708 * 269.66738 * 25 14 12 47 47 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 48 48 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 49 49 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 50 50 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 6 3.7369 1.9411 0.1257 7 6 4.1988 1.4191 1.4877 8 7 5.6532 1.5863 1.6086 9 6 6.1335 1.0953 2.9073 10 6 7.5730 1.0711 3.4654 11 6 6.7911 0.4276 4.6311 12 6 7.3048 -0.0703 5.9575 13 8 8.4862 0.0111 6.2194 14 7 6.4516 -0.6069 6.8521 15 6 6.5960 -1.1780 8.2054 16 6 5.3098 -1.9655 7.8965 17 6 4.3391 -2.0176 9.0480 18 1 4.5797 -1.5275 9.9798 19 6 3.1432 -2.6902 8.9116 20 7 2.2958 -2.7353 9.9163 21 14 2.7267 -3.5374 7.2997 22 1 3.2244 -4.9362 7.3327 23 1 1.2541 -3.5404 7.1082 24 1 3.3705 -2.8092 6.1770 25 6 4.9977 -0.8588 6.8726 26 6 6.0588 -0.3535 3.5119 27 6 5.7442 1.5317 4.3415 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2354 1.9149 -2.1491 32 1 0.6636 2.2778 -1.3970 33 1 1.9877 3.4637 -1.3072 34 1 3.9902 2.9975 0.0366 35 1 4.2340 1.3804 -0.6659 36 1 3.9456 0.3627 1.5769 37 1 3.7019 1.9799 2.2793 38 1 5.9197 2.5490 1.4654 39 1 7.9980 2.0509 3.6827 40 1 8.2571 0.4005 2.9455 41 1 6.4819 -0.4465 9.0054 42 1 7.4782 -1.8068 8.3250 43 1 5.4904 -2.9419 7.4469 44 1 1.4547 -3.2088 9.8205 45 1 4.6033 -1.2327 5.9278 46 1 4.4146 -0.0336 7.2815 47 1 6.6674 -1.0947 2.9940 48 1 5.0616 -0.7072 3.7743 49 1 4.7274 1.2957 4.6556 50 1 6.0601 2.5436 4.5950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278063823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:57 Heat of formation + Delta-G solvation = 87.410813 kcal Electronic energy + Delta-G solvation = -27209.008149 eV Core-core repulsion = 23559.900657 eV Total energy + Delta-G solvation = -3649.107492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.00545 -39.15266 -37.04010 -36.71256 -33.77802 -32.64509 -29.83542 -29.53967 -28.35586 -26.21797 -25.80304 -25.70290 -25.20561 -23.83813 -22.82537 -21.74655 -19.95820 -18.71260 -17.96966 -17.20253 -17.00578 -16.76363 -15.90653 -15.60909 -15.25737 -14.94851 -14.68608 -14.48674 -14.39359 -14.15469 -14.01427 -13.76405 -13.68001 -13.28723 -13.03720 -12.87183 -12.81484 -12.46115 -12.21476 -11.92877 -11.83566 -11.62809 -11.55123 -11.49024 -11.26453 -11.17503 -11.11913 -10.83804 -10.75509 -10.40449 -10.21124 -10.12795 -10.08452 -9.90451 -9.41113 -9.15145 -8.71184 -8.66758 -8.05276 -7.96365 -6.22482 -4.25146 1.34833 2.24585 2.85226 3.19800 3.21696 3.28854 3.31341 3.57782 4.08891 4.25827 4.29247 4.34743 4.36578 4.39578 4.58870 4.65022 4.70925 4.79540 4.84576 4.89166 5.00575 5.01937 5.03581 5.20235 5.29006 5.33768 5.41566 5.50608 5.56033 5.62365 5.65243 5.74551 5.76267 5.78489 5.84315 5.88721 5.92733 5.96891 6.05878 6.13861 6.19954 6.33974 6.38410 6.56389 6.76340 7.05228 7.13135 7.52748 8.26297 8.37214 8.62993 8.81286 9.38493 10.89560 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.003305 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.770692 B = 8470.361512 C =11132.033639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.251 6.251 3 C -0.057 4.057 4 H 0.087 0.913 5 C -0.147 4.147 6 C -0.098 4.098 7 C 0.056 3.944 8 N -0.624 5.624 9 C 0.047 3.953 10 C -0.078 4.078 11 C -0.146 4.146 12 C 0.588 3.412 13 O -0.555 6.555 14 N -0.633 5.633 15 C 0.118 3.882 16 C -0.006 4.006 17 C -0.515 4.515 18 H 0.080 0.920 19 C 0.077 3.923 20 N -0.892 5.892 21 Si 0.873 3.127 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.259 1.259 25 C 0.089 3.911 26 C -0.090 4.090 27 C -0.131 4.131 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.346 0.654 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.266 0.734 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 10.826 -22.505 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.025 6.025 3 C -0.186 4.186 4 H 0.105 0.895 5 C -0.206 4.206 6 C -0.137 4.137 7 C -0.073 4.073 8 N -0.251 5.251 9 C -0.046 4.046 10 C -0.116 4.116 11 C -0.150 4.150 12 C 0.376 3.624 13 O -0.434 6.434 14 N -0.366 5.366 15 C -0.003 4.003 16 C -0.026 4.026 17 C -0.553 4.553 18 H 0.098 0.902 19 C -0.127 4.127 20 N -0.529 5.529 21 Si 0.699 3.301 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.183 1.183 25 C -0.033 4.033 26 C -0.128 4.128 27 C -0.172 4.172 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.165 0.835 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.715 9.431 -22.804 24.687 hybrid contribution -1.738 1.320 -0.128 2.187 sum -2.454 10.751 -22.932 25.445 Atomic orbital electron populations 1.23425 0.94690 1.06570 1.04773 1.87110 1.06894 1.10691 1.97820 1.23144 0.99843 0.94254 1.01389 0.89491 1.22077 1.01291 1.00929 0.96296 1.21407 0.91745 1.01948 0.98575 1.22074 0.86540 1.02944 0.95737 1.59900 1.13066 1.25870 1.26307 1.24280 0.96743 0.96899 0.86635 1.23767 0.94504 1.00525 0.92816 1.23377 0.98866 0.99365 0.93417 1.18132 0.84927 0.76537 0.82806 1.90652 1.16287 1.57567 1.78916 1.50259 1.10400 1.58690 1.17252 1.23313 0.99394 0.95231 0.82373 1.20928 0.93177 0.93444 0.95036 1.20827 1.00935 1.34893 0.98637 0.90239 1.25004 0.96061 0.95272 0.96317 1.69894 1.09738 1.42139 1.31136 0.86945 0.77768 0.80705 0.84640 1.20090 1.21258 1.18302 1.24103 0.79336 0.99719 1.00185 1.24553 1.00250 0.94985 0.93061 1.24662 0.98445 0.97573 0.96480 0.88080 0.90490 0.90607 0.91179 0.92496 0.91650 0.90584 0.89865 0.89224 0.94632 0.83464 0.90679 0.90068 0.89997 0.91488 0.92417 0.92380 0.91912 0.89751 0.90130 0.90229 0.90265 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 10.45 101.05 1.06 0.19 16 2 S -0.25 -2.33 20.60 -107.50 -2.21 -4.54 16 3 C -0.06 -0.40 2.82 -26.73 -0.08 -0.48 16 4 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 5 C -0.15 -0.82 9.10 37.16 0.34 -0.48 16 6 C -0.10 -0.70 4.94 -26.73 -0.13 -0.84 16 7 C 0.06 0.52 5.51 -3.82 -0.02 0.49 16 8 N -0.62 -6.09 6.86 -116.36 -0.80 -6.88 16 9 C 0.05 0.56 3.89 -146.94 -0.57 -0.02 16 10 C -0.08 -1.01 7.78 -26.71 -0.21 -1.22 16 11 C -0.15 -2.25 3.11 -172.27 -0.54 -2.79 16 12 C 0.59 11.40 8.17 -10.99 -0.09 11.31 16 13 O -0.55 -12.37 17.82 5.56 0.10 -12.27 16 14 N -0.63 -12.39 3.61 -178.41 -0.64 -13.04 16 15 C 0.12 2.37 8.39 -2.97 -0.02 2.34 16 16 C -0.01 -0.14 2.88 -90.83 -0.26 -0.40 16 17 C -0.52 -13.24 9.32 -34.44 -0.32 -13.56 16 18 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 19 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.89 -25.61 13.96 55.43 0.77 -24.83 16 21 Si 0.87 19.81 27.09 -169.99 -4.60 15.20 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.26 -5.44 5.47 56.52 0.31 -5.13 16 25 C 0.09 1.73 7.37 -2.96 -0.02 1.71 16 26 C -0.09 -1.24 7.95 -24.71 -0.20 -1.44 16 27 C -0.13 -1.69 7.84 -25.99 -0.20 -1.90 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.07 0.42 7.14 -51.92 -0.37 0.05 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.30 6.92 -51.93 -0.36 -0.06 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.01 7.13 -51.93 -0.37 0.64 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.35 2.75 8.82 -39.29 -0.35 2.40 16 39 H 0.07 0.92 7.94 -51.93 -0.41 0.51 16 40 H 0.08 1.05 7.91 -51.93 -0.41 0.64 16 41 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.06 1.26 7.10 -51.93 -0.37 0.89 16 44 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.06 1.17 6.47 -51.93 -0.34 0.83 16 46 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 47 H 0.08 1.09 7.91 -51.93 -0.41 0.68 16 48 H 0.08 1.12 7.45 -51.93 -0.39 0.74 16 49 H 0.08 1.04 7.97 -51.92 -0.41 0.63 16 50 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 LS Contribution 411.13 15.07 6.20 6.20 Total: -1.00 -30.12 411.13 -11.45 -41.58 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.89 Total: 3.71 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.37 Total: -5.13 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.67 Total: -44.75 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.10 Total: -12.27 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.60 Total: 15.20 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.21 Total: -4.54 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.12 -11.45 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278063823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.987 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds