Wall clock time and date at job start Tue Mar 31 2020 20:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 103.00198 * 2 1 4 4 H 1.09003 * 109.46904 * 54.99714 * 3 2 1 5 5 C 1.53004 * 109.47067 * 294.99900 * 3 2 1 6 6 C 1.52993 * 109.47179 * 175.00107 * 3 2 1 7 7 C 1.53005 * 109.47095 * 294.99977 * 6 3 2 8 8 N 1.46897 * 109.47104 * 180.02562 * 7 6 3 9 9 C 1.46907 * 110.99968 * 179.97438 * 8 7 6 10 10 C 1.54412 * 129.01236 * 180.02562 * 9 8 7 11 11 C 1.54419 * 78.89086 * 180.64564 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00043 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00162 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46863 * 89.99320 * 21 19 17 23 23 H 1.48496 * 109.47186 * 209.99414 * 21 19 17 24 24 H 1.48506 * 109.46767 * 329.99535 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47170 * 300.00247 * 1 2 3 30 30 H 1.09002 * 109.47445 * 59.99786 * 1 2 3 31 31 H 1.08998 * 109.46778 * 300.00340 * 5 3 2 32 32 H 1.09004 * 109.46982 * 59.99774 * 5 3 2 33 33 H 1.08998 * 109.47051 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47412 * 175.00235 * 6 3 2 35 35 H 1.09002 * 109.47765 * 54.99811 * 6 3 2 36 36 H 1.08997 * 109.47495 * 60.00048 * 7 6 3 37 37 H 1.09002 * 109.46809 * 299.99959 * 7 6 3 38 38 H 1.00905 * 111.00263 * 56.04491 * 8 7 6 39 39 H 1.08992 * 114.93459 * 68.16028 * 10 9 8 40 40 H 1.08998 * 114.98218 * 293.12567 * 10 9 8 41 41 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 42 42 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 43 43 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 44 44 H 0.97000 * 120.00154 * 180.02562 * 20 19 17 45 45 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 46 46 H 1.09005 * 113.76708 * 269.66738 * 25 14 12 47 47 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 48 48 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 49 49 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 50 50 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 0.8418 5 6 1.7428 2.4016 -1.3074 6 6 3.7369 1.9411 0.1257 7 6 4.1988 1.4191 1.4877 8 7 5.6532 1.5863 1.6086 9 6 6.1335 1.0953 2.9073 10 6 7.5730 1.0711 3.4654 11 6 6.7911 0.4276 4.6311 12 6 7.3048 -0.0703 5.9575 13 8 8.4862 0.0111 6.2194 14 7 6.4516 -0.6069 6.8521 15 6 6.5960 -1.1780 8.2054 16 6 5.3098 -1.9655 7.8965 17 6 4.3391 -2.0176 9.0480 18 1 4.5797 -1.5275 9.9798 19 6 3.1432 -2.6902 8.9116 20 7 2.2958 -2.7353 9.9163 21 14 2.7267 -3.5374 7.2997 22 1 3.2244 -4.9362 7.3327 23 1 1.2541 -3.5404 7.1082 24 1 3.3705 -2.8092 6.1770 25 6 4.9977 -0.8588 6.8726 26 6 6.0588 -0.3535 3.5119 27 6 5.7442 1.5317 4.3415 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.2354 1.9149 -2.1491 32 1 0.6636 2.2778 -1.3970 33 1 1.9877 3.4637 -1.3072 34 1 3.9902 2.9975 0.0366 35 1 4.2340 1.3804 -0.6659 36 1 3.9456 0.3627 1.5769 37 1 3.7019 1.9799 2.2793 38 1 5.9197 2.5490 1.4654 39 1 7.9980 2.0509 3.6827 40 1 8.2571 0.4005 2.9455 41 1 6.4819 -0.4465 9.0054 42 1 7.4782 -1.8068 8.3250 43 1 5.4904 -2.9419 7.4469 44 1 1.4547 -3.2088 9.8205 45 1 4.6033 -1.2327 5.9278 46 1 4.4146 -0.0336 7.2815 47 1 6.6674 -1.0947 2.9940 48 1 5.0616 -0.7072 3.7743 49 1 4.7274 1.2957 4.6556 50 1 6.0601 2.5436 4.5950 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278063823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:57 Heat of formation + Delta-G solvation = 69.530136 kcal Electronic energy + Delta-G solvation = -27209.783513 eV Core-core repulsion = 23559.900657 eV Total energy + Delta-G solvation = -3649.882856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.08895 -40.73906 -38.60805 -37.42734 -34.66666 -34.43855 -31.47847 -30.18893 -28.97048 -27.79365 -27.01891 -26.83507 -26.69558 -25.00257 -23.71977 -22.33759 -21.56845 -19.99287 -19.29011 -19.09995 -18.03740 -17.61326 -17.29297 -16.72694 -16.44893 -15.92605 -15.91290 -15.48527 -15.31100 -15.27022 -15.04521 -14.90290 -14.78315 -14.56880 -14.29648 -13.75737 -13.55969 -13.50713 -13.40263 -13.34614 -13.12279 -12.67437 -12.58967 -12.49198 -12.33291 -12.25186 -12.14852 -12.00850 -11.87260 -11.86403 -11.65858 -11.45119 -11.32725 -11.19665 -10.85028 -10.67246 -10.64883 -9.67744 -9.52394 -8.64090 -8.28394 -6.35828 0.78639 1.38215 1.40846 1.43286 1.52239 1.69212 1.81054 2.37454 2.66573 3.03918 3.11373 3.23028 3.27471 3.41677 3.50343 3.60970 3.84212 3.94021 4.04218 4.13363 4.28925 4.31222 4.33933 4.39546 4.43722 4.45332 4.49126 4.52631 4.56947 4.60652 4.67843 4.74664 4.75339 4.78853 4.83463 4.84406 4.85930 4.90431 4.93054 4.94438 5.01097 5.15256 5.21941 5.28798 5.35153 5.59150 5.92223 6.26903 6.37091 6.68287 6.77677 7.08031 7.31581 8.87105 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.003305 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.770692 B = 8470.361512 C =11132.033639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.315 6.315 3 C -0.044 4.044 4 H 0.090 0.910 5 C -0.143 4.143 6 C -0.091 4.091 7 C 0.059 3.941 8 N -0.621 5.621 9 C 0.076 3.924 10 C -0.073 4.073 11 C -0.175 4.175 12 C 0.585 3.415 13 O -0.589 6.589 14 N -0.634 5.634 15 C 0.117 3.883 16 C -0.012 4.012 17 C -0.515 4.515 18 H 0.042 0.958 19 C 0.023 3.977 20 N -0.943 5.943 21 Si 0.934 3.066 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.230 1.230 25 C 0.104 3.896 26 C -0.092 4.092 27 C -0.123 4.123 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.361 0.639 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.268 0.732 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 12.215 -25.723 28.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.090 6.090 3 C -0.173 4.173 4 H 0.108 0.892 5 C -0.202 4.202 6 C -0.129 4.129 7 C -0.070 4.070 8 N -0.250 5.250 9 C -0.017 4.017 10 C -0.112 4.112 11 C -0.179 4.179 12 C 0.375 3.625 13 O -0.471 6.471 14 N -0.366 5.366 15 C -0.004 4.004 16 C -0.031 4.031 17 C -0.553 4.553 18 H 0.060 0.940 19 C -0.176 4.176 20 N -0.582 5.582 21 Si 0.757 3.243 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.153 1.153 25 C -0.018 4.018 26 C -0.130 4.130 27 C -0.164 4.164 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.183 0.817 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.091 10.845 -26.046 28.235 hybrid contribution -1.563 0.916 0.967 2.054 sum -2.654 11.761 -25.079 27.826 Atomic orbital electron populations 1.23420 0.92288 1.06949 1.05613 1.87314 1.09763 1.13914 1.97974 1.23151 0.99725 0.92015 1.02368 0.89180 1.22049 1.01455 1.01573 0.95145 1.21362 0.91667 1.02981 0.96924 1.22032 0.86003 1.01881 0.97035 1.59891 1.13557 1.27040 1.24511 1.23947 0.95600 0.95179 0.86979 1.23775 0.95133 1.00714 0.91546 1.23353 1.01091 1.01286 0.92152 1.18740 0.84346 0.75577 0.83790 1.90626 1.17733 1.58869 1.79870 1.50229 1.10459 1.58901 1.17017 1.23231 0.98893 0.95211 0.83112 1.20872 0.93147 0.94596 0.94519 1.20977 1.01759 1.33897 0.98632 0.93970 1.25821 0.95874 0.96071 0.99809 1.70035 1.10530 1.43906 1.33705 0.85958 0.77530 0.79655 0.81112 1.19980 1.21350 1.15256 1.23874 0.79418 0.98591 0.99936 1.24586 0.99706 0.96197 0.92534 1.24664 0.97466 0.97135 0.97095 0.87996 0.90140 0.89216 0.91603 0.92132 0.90097 0.88323 0.90690 0.91266 0.94442 0.81749 0.89714 0.90110 0.90178 0.90865 0.91906 0.92331 0.90251 0.89666 0.90160 0.90524 0.90395 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.45 113.37 1.18 -0.20 16 2 S -0.31 -5.45 20.60 -56.49 -1.16 -6.61 16 3 C -0.04 -0.51 2.82 30.59 0.09 -0.43 16 4 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.14 -1.21 9.10 71.98 0.66 -0.55 16 6 C -0.09 -1.05 4.94 30.59 0.15 -0.90 16 7 C 0.06 0.94 5.51 86.31 0.48 1.41 16 8 N -0.62 -10.17 6.86 -522.04 -3.58 -13.75 16 9 C 0.08 1.58 3.89 -6.41 -0.02 1.55 16 10 C -0.07 -1.74 7.78 30.61 0.24 -1.50 16 11 C -0.17 -5.08 3.11 -63.68 -0.20 -5.28 16 12 C 0.59 22.13 8.17 87.66 0.72 22.85 16 13 O -0.59 -26.06 17.82 -3.03 -0.05 -26.11 16 14 N -0.63 -24.19 3.61 -836.76 -3.02 -27.20 16 15 C 0.12 4.69 8.39 86.48 0.73 5.41 16 16 C -0.01 -0.51 2.88 -10.87 -0.03 -0.54 16 17 C -0.51 -26.91 9.32 25.60 0.24 -26.67 16 18 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 19 C 0.02 1.23 5.47 84.65 0.46 1.69 16 20 N -0.94 -55.43 13.96 21.45 0.30 -55.13 16 21 Si 0.93 40.23 27.09 68.60 1.86 42.09 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.23 -8.70 5.47 99.48 0.54 -8.16 16 25 C 0.10 3.89 7.37 86.49 0.64 4.53 16 26 C -0.09 -2.33 7.95 31.90 0.25 -2.08 16 27 C -0.12 -2.86 7.84 31.07 0.24 -2.61 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.81 7.14 -2.39 -0.02 0.80 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.48 6.92 -2.39 -0.02 0.46 16 33 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.43 7.13 -2.39 -0.02 1.41 16 37 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.36 4.34 8.82 -89.69 -0.79 3.55 16 39 H 0.08 1.85 7.94 -2.39 -0.02 1.83 16 40 H 0.08 1.92 7.91 -2.39 -0.02 1.90 16 41 H 0.08 3.20 8.09 -2.39 -0.02 3.18 16 42 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.06 2.65 7.10 -2.39 -0.02 2.63 16 44 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.08 2.72 6.47 -2.39 -0.02 2.71 16 46 H 0.09 3.19 8.09 -2.38 -0.02 3.17 16 47 H 0.08 2.03 7.91 -2.39 -0.02 2.01 16 48 H 0.08 1.99 7.45 -2.39 -0.02 1.97 16 49 H 0.08 1.85 7.97 -2.38 -0.02 1.83 16 50 H 0.08 1.76 7.93 -2.39 -0.02 1.74 16 Total: -1.00 -66.23 411.13 0.12 -66.11 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -0.04 Total: 23.93 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 5.81 Total: -3.32 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -6.30 Total: -96.08 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.86 Total: 42.09 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -1.16 Total: -6.61 kcal Total: -66.23 0.12 -66.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278063823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.638 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds