Wall clock time and date at job start Tue Mar 31 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99994 * 2 1 4 4 H 1.48505 * 109.47511 * 270.00032 * 3 2 1 5 5 H 1.48502 * 109.47270 * 30.00179 * 3 2 1 6 6 H 1.48502 * 109.47184 * 150.00369 * 3 2 1 7 7 C 1.38810 * 119.99767 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00609 * 359.97438 * 7 2 1 9 9 N 1.36944 * 119.99655 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99780 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46985 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47609 * 294.99874 * 11 10 9 13 13 N 1.46502 * 109.46936 * 55.00227 * 11 10 9 14 14 C 1.34783 * 119.99820 * 244.77819 * 13 11 10 15 15 O 1.21607 * 119.99891 * 355.04067 * 14 13 11 16 16 C 1.47429 * 119.99994 * 174.76816 * 14 13 11 17 17 C 1.41288 * 126.41268 * 359.95703 * 16 14 13 18 18 N 1.30446 * 108.02186 * 179.88110 * 17 16 14 19 19 N 1.39940 * 108.89598 * 0.38625 * 18 17 16 20 20 C 1.46496 * 125.75237 * 179.72699 * 19 18 17 21 21 C 1.52997 * 109.47674 * 305.02554 * 20 19 18 22 22 F 1.39892 * 109.47318 * 180.02562 * 21 20 19 23 23 C 1.34251 * 108.49045 * 359.75236 * 19 18 17 24 24 C 1.53001 * 109.47131 * 174.99837 * 11 10 9 25 25 C 1.54268 * 110.03328 * 297.06414 * 24 11 10 26 26 C 1.54964 * 104.16233 * 217.13806 * 25 24 11 27 27 C 1.54889 * 102.77787 * 37.88597 * 26 25 24 28 28 C 1.53874 * 110.03216 * 179.84928 * 24 11 10 29 29 H 0.96998 * 119.99948 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00357 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47428 * 59.99706 * 10 9 7 32 32 H 1.08999 * 109.46836 * 299.99779 * 10 9 7 33 33 H 0.96995 * 120.00103 * 64.77650 * 13 11 10 34 34 H 1.08000 * 125.98749 * 0.04138 * 17 16 14 35 35 H 1.09000 * 109.47251 * 65.03229 * 20 19 18 36 36 H 1.09007 * 109.46987 * 185.02262 * 20 19 18 37 37 H 1.09000 * 109.46855 * 300.00393 * 21 20 19 38 38 H 1.08999 * 109.46820 * 59.99773 * 21 20 19 39 39 H 1.08005 * 126.29328 * 179.97438 * 23 19 18 40 40 H 1.09002 * 110.01769 * 58.45364 * 24 11 10 41 41 H 1.09004 * 110.48447 * 335.78617 * 25 24 11 42 42 H 1.09000 * 110.48723 * 98.42318 * 25 24 11 43 43 H 1.09002 * 110.71536 * 279.57224 * 26 25 24 44 44 H 1.08991 * 110.76693 * 156.22421 * 26 25 24 45 45 H 1.08997 * 110.48633 * 203.41447 * 27 26 25 46 46 H 1.09003 * 110.59899 * 80.81632 * 27 26 25 47 47 H 1.09003 * 110.02955 * 238.56810 * 28 24 11 48 48 H 1.08999 * 110.03244 * 359.94628 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.6164 -2.1913 0.0000 12 1 5.8943 -1.6979 -0.9314 13 7 5.9517 -1.3232 1.1315 14 6 6.4263 -0.0812 0.9105 15 8 6.6614 0.2868 -0.2245 16 6 6.6547 0.8332 2.0441 17 6 6.4232 0.5510 3.4091 18 7 6.7482 1.6083 4.1005 19 7 7.1882 2.6059 3.2233 20 6 7.6371 3.9464 3.6075 21 6 6.5483 4.6310 4.4362 22 9 6.9769 5.9113 4.8025 23 6 7.1290 2.1275 1.9703 24 6 6.3804 -3.5109 0.1258 25 6 6.0525 -4.1850 1.4741 26 6 7.3946 -4.8212 1.9162 27 6 8.4371 -3.7659 1.4707 28 6 7.8960 -3.2449 0.1233 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0004 31 1 3.8492 -3.0423 -0.8902 32 1 3.8485 -3.0426 0.8898 33 1 5.8321 -1.6422 2.0396 34 1 6.0460 -0.3782 3.8099 35 1 8.5492 3.8685 4.1992 36 1 7.8349 4.5342 2.7110 37 1 5.6363 4.7089 3.8444 38 1 6.3506 4.0433 5.3326 39 1 7.4018 2.6579 1.0699 40 1 6.1165 -4.1748 -0.6975 41 1 5.7243 -3.4428 2.2018 42 1 5.2907 -4.9532 1.3413 43 1 7.5599 -5.7684 1.4028 44 1 7.4202 -4.9571 2.9973 45 1 9.4147 -4.2287 1.3357 46 1 8.4967 -2.9552 2.1969 47 1 8.3677 -3.7803 -0.7007 48 1 8.0872 -2.1757 0.0315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278250961.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:24 Heat of formation + Delta-G solvation = -7.093801 kcal Electronic energy + Delta-G solvation = -30309.317969 eV Core-core repulsion = 26122.192024 eV Total energy + Delta-G solvation = -4187.125944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.13265 -41.53997 -39.80134 -37.87223 -35.30047 -34.54347 -33.46773 -31.44594 -30.63796 -30.18796 -28.98537 -28.71894 -26.49219 -24.32809 -23.49431 -22.56216 -21.48870 -20.98212 -20.53824 -19.92201 -19.24099 -18.20577 -17.60771 -16.85949 -16.60983 -15.93511 -15.90206 -15.73183 -15.43958 -15.02368 -14.66102 -14.43545 -14.34692 -14.04306 -13.76946 -13.72145 -13.33331 -13.24276 -12.97148 -12.85024 -12.66173 -12.15814 -11.96190 -11.82898 -11.51861 -11.47532 -11.09836 -11.08830 -11.03648 -10.85060 -10.65548 -10.58430 -10.47103 -10.41892 -10.06697 -9.80913 -9.64530 -9.56390 -8.91717 -8.85015 -8.58726 -7.17503 -5.73772 -3.07730 1.39991 1.96726 2.10180 3.41601 3.43762 3.47862 3.49724 3.66992 3.78817 4.12070 4.46023 4.53176 4.56896 4.59935 4.63841 4.65260 4.71938 4.73353 4.90779 5.06930 5.19193 5.23669 5.37774 5.40443 5.46454 5.56034 5.58636 5.60949 5.65129 5.65639 5.81902 5.86067 5.91261 5.93710 6.08378 6.12877 6.22972 6.27894 6.31000 6.42077 6.47363 6.54539 6.66318 6.92556 7.31459 7.81396 8.03528 8.45431 8.54570 9.26462 9.99407 10.19731 11.44663 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.007420 B = 0.004764 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3772.593508 B = 5875.679926 C = 8836.061616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.752 5.752 10 C 0.146 3.854 11 C 0.135 3.865 12 H 0.101 0.899 13 N -0.705 5.705 14 C 0.597 3.403 15 O -0.553 6.553 16 C -0.282 4.282 17 C 0.090 3.910 18 N -0.298 5.298 19 N -0.368 5.368 20 C 0.104 3.896 21 C 0.051 3.949 22 F -0.208 7.208 23 C 0.128 3.872 24 C -0.097 4.097 25 C -0.119 4.119 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.258 0.742 30 H 0.364 0.636 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.396 0.604 34 H 0.191 0.809 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.189 0.811 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.657 -0.728 8.227 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.190 4.190 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.398 5.398 10 C 0.018 3.982 11 C 0.030 3.970 12 H 0.119 0.881 13 N -0.356 5.356 14 C 0.384 3.616 15 O -0.432 6.432 16 C -0.296 4.296 17 C -0.098 4.098 18 N -0.117 5.117 19 N -0.147 5.147 20 C -0.018 4.018 21 C -0.005 4.005 22 F -0.189 7.189 23 C -0.022 4.022 24 C -0.117 4.117 25 C -0.156 4.156 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.156 4.156 29 H 0.068 0.932 30 H 0.197 0.803 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.232 0.768 34 H 0.208 0.792 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.206 0.794 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.708 0.141 8.630 22.435 hybrid contribution 0.280 0.846 -0.383 0.970 sum 20.987 0.987 8.247 22.571 Atomic orbital electron populations 1.69702 1.05037 1.25686 1.57907 1.24617 0.95149 0.97033 1.02168 0.86588 0.79210 0.85160 0.77965 1.21130 1.22043 1.20149 1.19055 0.80696 0.94620 1.42640 0.89223 1.42656 1.03890 1.02285 1.90973 1.21029 0.88221 0.89740 0.99201 1.21411 0.95135 0.89757 0.90683 0.88060 1.45620 1.65829 1.14097 1.10004 1.17145 0.76083 0.81139 0.87229 1.90760 1.53217 1.76030 1.23160 1.20348 1.18189 0.96721 0.94374 1.24090 0.96655 0.97735 0.91286 1.77127 1.20641 0.97334 1.16636 1.48208 1.50272 1.11688 1.04572 1.22281 0.98426 0.78678 1.02406 1.22182 0.97236 0.79732 1.01337 1.92795 1.91718 1.41093 1.93262 1.22986 0.95919 0.94294 0.88983 1.22079 0.94917 0.96092 0.98625 1.22440 0.97128 0.99545 0.96511 1.22508 0.95112 0.98220 1.00335 1.22322 0.98080 0.98267 0.97241 1.22150 0.94708 1.01589 0.97114 0.93177 0.80306 0.94656 0.95098 0.76840 0.79205 0.88143 0.87107 0.89767 0.88868 0.79434 0.89793 0.91570 0.91211 0.91721 0.91899 0.92324 0.91947 0.92223 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.87 13.97 55.49 0.78 -29.09 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 23.29 27.74 -169.99 -4.71 18.57 16 4 H -0.28 -7.63 7.11 56.52 0.40 -7.22 16 5 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 7 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -18.16 5.24 -59.91 -0.31 -18.47 16 10 C 0.15 2.73 5.84 -4.04 -0.02 2.71 16 11 C 0.13 2.05 2.04 -67.93 -0.14 1.91 16 12 H 0.10 1.78 6.91 -51.93 -0.36 1.42 16 13 N -0.71 -10.21 3.74 -54.88 -0.21 -10.41 16 14 C 0.60 9.81 6.92 -12.51 -0.09 9.72 16 15 O -0.55 -10.83 16.24 5.27 0.09 -10.74 16 16 C -0.28 -4.02 6.13 -105.07 -0.64 -4.66 16 17 C 0.09 1.13 11.51 -16.98 -0.20 0.94 16 18 N -0.30 -3.76 12.33 30.86 0.38 -3.38 16 19 N -0.37 -4.05 3.65 -60.81 -0.22 -4.27 16 20 C 0.10 0.77 6.94 -4.05 -0.03 0.75 16 21 C 0.05 0.42 7.73 37.16 0.29 0.71 16 22 F -0.21 -1.97 17.36 2.25 0.04 -1.93 16 23 C 0.13 1.59 11.25 -16.57 -0.19 1.40 16 24 C -0.10 -1.13 2.81 -89.50 -0.25 -1.38 16 25 C -0.12 -1.22 5.13 -25.03 -0.13 -1.35 16 26 C -0.12 -1.09 6.91 -24.70 -0.17 -1.27 16 27 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 28 C -0.12 -1.28 6.19 -25.61 -0.16 -1.44 16 29 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 30 H 0.36 8.99 4.67 -40.82 -0.19 8.80 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.56 7.13 -51.93 -0.37 0.19 16 33 H 0.40 4.87 5.93 -40.82 -0.24 4.63 16 34 H 0.19 1.84 7.51 -52.49 -0.39 1.44 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.58 8.06 -51.93 -0.42 0.16 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.19 1.93 8.06 -52.48 -0.42 1.50 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.69 5.96 -51.93 -0.31 0.38 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -36.15 390.47 -7.76 -43.91 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.32 Total: 10.17 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.15 Total: -0.24 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: 0.41 Total: -65.63 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.71 Total: 18.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.15 -7.76 -43.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278250961.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.819 kcal (2) G-P(sol) polarization free energy of solvation -36.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds