Wall clock time and date at job start Tue Mar 31 2020 21:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00586 * 2 1 4 4 H 1.08000 * 119.99984 * 203.18546 * 3 2 1 5 5 C 1.38810 * 119.99901 * 23.18745 * 3 2 1 6 6 N 1.31627 * 119.99923 * 13.70777 * 5 3 2 7 7 Si 1.86798 * 120.00202 * 193.70978 * 5 3 2 8 8 H 1.48496 * 109.47234 * 89.99913 * 7 5 3 9 9 H 1.48503 * 109.47195 * 209.99869 * 7 5 3 10 10 H 1.48498 * 109.47042 * 329.99928 * 7 5 3 11 11 C 1.46505 * 119.99713 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47071 * 90.00213 * 11 2 1 13 13 H 1.09001 * 109.47036 * 60.00097 * 12 11 2 14 14 O 1.42904 * 109.46948 * 300.00126 * 12 11 2 15 15 C 1.52998 * 109.47128 * 180.02562 * 12 11 2 16 16 N 1.46493 * 109.47098 * 185.00030 * 15 12 11 17 17 C 1.46504 * 119.99917 * 270.00121 * 16 15 12 18 18 C 1.34779 * 120.00382 * 89.99771 * 16 15 12 19 19 O 1.21280 * 119.99662 * 0.02562 * 18 16 15 20 20 C 1.50699 * 120.00351 * 180.02562 * 18 16 15 21 21 H 1.09002 * 109.47134 * 14.99753 * 20 18 16 22 22 F 1.39907 * 109.47123 * 255.00195 * 20 18 16 23 23 C 1.52992 * 109.47014 * 135.00220 * 20 18 16 24 24 C 1.50698 * 109.47282 * 184.99838 * 23 20 18 25 25 C 1.38238 * 120.00307 * 269.73178 * 24 23 20 26 26 C 1.38237 * 120.00024 * 179.76476 * 25 24 23 27 27 C 1.38236 * 119.99835 * 0.50170 * 26 25 24 28 28 C 1.38228 * 120.00148 * 359.74845 * 27 26 25 29 29 C 1.38234 * 120.00014 * 89.99560 * 24 23 20 30 30 H 1.08995 * 109.47208 * 275.16338 * 1 2 3 31 31 H 1.09009 * 109.46675 * 35.15807 * 1 2 3 32 32 H 1.08994 * 109.47331 * 155.15521 * 1 2 3 33 33 H 0.96997 * 119.99706 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47111 * 330.00356 * 11 2 1 35 35 H 1.09001 * 109.47274 * 209.99963 * 11 2 1 36 36 H 0.96695 * 113.99745 * 299.99832 * 14 12 11 37 37 H 1.09003 * 109.46850 * 305.00245 * 15 12 11 38 38 H 1.08999 * 109.46819 * 65.00110 * 15 12 11 39 39 H 1.09000 * 109.47362 * 90.00239 * 17 16 15 40 40 H 1.09006 * 109.46899 * 209.99623 * 17 16 15 41 41 H 1.08998 * 109.47345 * 329.99790 * 17 16 15 42 42 H 1.08998 * 109.47377 * 305.00004 * 23 20 18 43 43 H 1.09003 * 109.47482 * 65.00247 * 23 20 18 44 44 H 1.08001 * 119.99562 * 359.97438 * 25 24 23 45 45 H 1.07998 * 119.99656 * 180.22841 * 26 25 24 46 46 H 1.07999 * 119.99490 * 179.72369 * 27 26 25 47 47 H 1.07997 * 120.00373 * 179.97438 * 28 27 26 48 48 H 1.08004 * 119.99772 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1643 1.2235 -0.3682 5 6 1.5399 2.3395 0.4733 6 7 0.4225 2.2572 1.1641 7 14 2.3049 4.0086 0.1300 8 1 1.7682 4.5462 -1.1459 9 1 1.9756 4.9414 1.2376 10 1 3.7793 3.8653 0.0255 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 1 3.0416 -0.9517 -1.9559 14 8 1.2038 -1.8822 -2.1154 15 6 3.2168 -3.0365 -1.4412 16 7 3.5653 -3.3998 -2.8169 17 6 2.6446 -4.2130 -3.6154 18 6 4.7328 -2.9860 -3.3482 19 8 5.4951 -2.3132 -2.6871 20 6 5.0910 -3.3593 -4.7636 21 1 4.2021 -3.7221 -5.2797 22 9 6.0643 -4.3641 -4.7488 23 6 5.6378 -2.1302 -5.4923 24 6 5.8808 -2.4713 -6.9399 25 6 7.1108 -2.9610 -7.3377 26 6 7.3321 -3.2784 -8.6648 27 6 6.3267 -3.0963 -9.5959 28 6 5.0984 -2.6018 -9.1990 29 6 4.8755 -2.2893 -7.8710 30 1 -0.3633 0.0925 1.0234 31 1 -0.3633 0.8403 -0.5918 32 1 -0.3634 -0.9325 -0.4318 33 1 -0.0035 3.0633 1.4951 34 1 1.6083 -2.0282 0.5147 35 1 3.1499 -1.1383 0.5143 36 1 0.6266 -2.5446 -1.7116 37 1 4.1275 -2.9304 -0.8516 38 1 2.5914 -3.8163 -1.0067 39 1 1.9582 -3.5605 -4.1550 40 1 3.2127 -4.8113 -4.3277 41 1 2.0780 -4.8720 -2.9576 42 1 4.9146 -1.3174 -5.4269 43 1 6.5751 -1.8207 -5.0298 44 1 7.8978 -3.0988 -6.6110 45 1 8.2919 -3.6645 -8.9749 46 1 6.5010 -3.3401 -10.6335 47 1 4.3130 -2.4591 -9.9265 48 1 3.9160 -1.9022 -7.5610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278882641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:46 Heat of formation + Delta-G solvation = -79.676891 kcal Electronic energy + Delta-G solvation = -29634.002399 eV Core-core repulsion = 25411.436264 eV Total energy + Delta-G solvation = -4222.566134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.06427 -40.02084 -39.40925 -37.50214 -35.48165 -34.55682 -33.96986 -31.43663 -31.14693 -30.39322 -29.20606 -27.02501 -26.21636 -25.67608 -24.22644 -22.83115 -22.09227 -21.26792 -20.61319 -19.53958 -18.00334 -17.05617 -16.91568 -16.74171 -16.27011 -15.95582 -15.43924 -15.28626 -15.14486 -14.93996 -14.82908 -14.61363 -14.04236 -13.66743 -13.60928 -13.37753 -13.23755 -12.98763 -12.96012 -12.89973 -12.79166 -12.66905 -12.16462 -11.90524 -11.60387 -11.40298 -11.26971 -11.20090 -11.12202 -10.85653 -10.67468 -10.54830 -10.36458 -10.08980 -9.88483 -9.83058 -9.71629 -9.17606 -8.98732 -8.70347 -8.40150 -6.65268 -5.67583 -3.14273 1.03875 1.14736 2.32980 2.72291 3.42490 3.48470 3.49834 3.50520 4.00064 4.30436 4.34359 4.52924 4.55160 4.64017 4.75383 4.79036 4.85900 4.87932 4.89804 5.10993 5.22522 5.24861 5.26258 5.32410 5.46986 5.51698 5.57753 5.58676 5.77472 5.79492 5.81070 5.87577 5.89478 6.00873 6.19339 6.25155 6.35504 6.38261 6.61293 6.73168 6.73447 6.83900 7.15262 7.44953 7.76167 7.86091 7.92816 8.14091 8.44548 9.28493 9.91270 10.39784 11.36456 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.002613 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.659328 B =10714.066987 C =11693.781767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.592 5.592 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.126 3.874 12 C 0.070 3.930 13 H 0.097 0.903 14 O -0.549 6.549 15 C 0.082 3.918 16 N -0.598 5.598 17 C 0.074 3.926 18 C 0.490 3.510 19 O -0.516 6.516 20 C 0.087 3.913 21 H 0.103 0.897 22 F -0.189 7.189 23 C -0.099 4.099 24 C -0.086 4.086 25 C -0.104 4.104 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.000 1.000 33 H 0.252 0.748 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.358 0.642 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -17.235 -18.090 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.313 5.313 3 C -0.383 4.383 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C -0.003 4.003 12 C 0.007 3.993 13 H 0.115 0.885 14 O -0.352 6.352 15 C -0.041 4.041 16 N -0.331 5.331 17 C -0.069 4.069 18 C 0.275 3.725 19 O -0.390 6.390 20 C 0.048 3.952 21 H 0.121 0.879 22 F -0.170 7.170 23 C -0.137 4.137 24 C -0.086 4.086 25 C -0.122 4.122 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.138 4.138 29 C -0.132 4.132 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.203 0.797 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.568 -16.281 -18.006 25.428 hybrid contribution 0.099 0.423 0.148 0.459 sum 7.667 -15.858 -17.857 25.083 Atomic orbital electron populations 1.20733 0.82395 0.95588 0.98788 1.43702 1.01873 1.00170 1.85587 1.19183 0.98318 0.85720 1.35104 0.91595 1.24997 0.97999 0.98495 0.98133 1.70079 1.20108 1.27135 1.37945 0.86263 0.78834 0.84155 0.77390 1.21516 1.21768 1.20418 1.21280 0.97049 0.89501 0.92467 1.23285 0.84170 0.94146 0.97674 0.88495 1.86633 1.29136 1.63319 1.56151 1.22466 1.01622 0.98510 0.81541 1.47800 1.18486 1.51962 1.14849 1.21939 0.93661 0.95056 0.96223 1.20844 0.81888 0.80904 0.88870 1.90762 1.49565 1.37074 1.61626 1.21656 0.91174 0.87933 0.94470 0.87893 1.92878 1.64987 1.61787 1.97365 1.21052 1.04722 0.96362 0.91548 1.19715 0.94416 0.99896 0.94615 1.21130 0.96766 0.98108 0.96164 1.21162 0.99260 1.00198 0.93244 1.21178 0.93648 0.99664 0.99519 1.21147 0.97356 0.99394 0.95942 1.21131 0.98904 0.99982 0.93138 0.95545 0.94402 0.98133 0.93833 0.94349 0.92553 0.79694 0.88996 0.90294 0.91245 0.91476 0.90588 0.88428 0.88345 0.85804 0.86015 0.86157 0.85947 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.20 8.66 59.84 0.52 4.72 16 2 N -0.59 -14.99 2.84 -181.12 -0.51 -15.50 16 3 C -0.25 -7.18 9.65 -15.06 -0.15 -7.32 16 4 H 0.07 1.86 7.87 -52.49 -0.41 1.45 16 5 C 0.00 0.05 5.09 -17.43 -0.09 -0.03 16 6 N -0.91 -27.04 10.76 55.49 0.60 -26.44 16 7 Si 0.90 22.60 29.58 -169.99 -5.03 17.58 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 C 0.13 2.50 5.34 -4.04 -0.02 2.48 16 12 C 0.07 1.20 3.48 -26.73 -0.09 1.11 16 13 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 14 O -0.55 -8.94 11.70 -35.23 -0.41 -9.36 16 15 C 0.08 1.09 5.11 -4.05 -0.02 1.07 16 16 N -0.60 -7.37 2.84 -181.57 -0.52 -7.89 16 17 C 0.07 0.62 9.54 59.85 0.57 1.19 16 18 C 0.49 6.92 7.01 -10.98 -0.08 6.85 16 19 O -0.52 -9.33 16.19 5.56 0.09 -9.24 16 20 C 0.09 0.97 3.15 -27.89 -0.09 0.88 16 21 H 0.10 0.89 5.86 -51.93 -0.30 0.59 16 22 F -0.19 -2.35 16.77 2.25 0.04 -2.32 16 23 C -0.10 -1.08 4.82 -27.89 -0.13 -1.22 16 24 C -0.09 -0.87 5.00 -104.62 -0.52 -1.39 16 25 C -0.10 -1.01 9.56 -39.58 -0.38 -1.39 16 26 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 27 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 28 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 29 C -0.11 -1.03 9.70 -39.58 -0.38 -1.42 16 30 H 0.03 0.71 7.33 -51.93 -0.38 0.33 16 31 H 0.04 1.03 7.37 -51.92 -0.38 0.64 16 32 H 0.00 0.00 7.00 -51.93 -0.36 -0.36 16 33 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.04 0.67 8.07 -51.93 -0.42 0.26 16 35 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 36 H 0.36 4.50 8.79 45.56 0.40 4.90 16 37 H 0.09 1.35 7.42 -51.93 -0.39 0.97 16 38 H 0.08 0.82 7.89 -51.93 -0.41 0.41 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.45 6.23 -51.93 -0.32 0.13 16 41 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 42 H 0.10 1.05 8.09 -51.93 -0.42 0.63 16 43 H 0.10 1.17 7.99 -51.93 -0.41 0.76 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -34.96 398.97 -8.53 -43.49 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.74 Total: 2.30 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.06 Total: 1.36 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.43 Total: -49.83 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.32 Total: -18.59 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.96 -8.53 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278882641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.187 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds