Wall clock time and date at job start Tue Mar 31 2020 21:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00586 * 2 1 4 4 H 1.08000 * 119.99984 * 203.18546 * 3 2 1 5 5 C 1.38810 * 119.99901 * 23.18745 * 3 2 1 6 6 N 1.31627 * 119.99923 * 13.70777 * 5 3 2 7 7 Si 1.86798 * 120.00202 * 193.70978 * 5 3 2 8 8 H 1.48496 * 109.47234 * 89.99913 * 7 5 3 9 9 H 1.48503 * 109.47195 * 209.99869 * 7 5 3 10 10 H 1.48498 * 109.47042 * 329.99928 * 7 5 3 11 11 C 1.46505 * 119.99713 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47071 * 90.00213 * 11 2 1 13 13 H 1.09001 * 109.47036 * 60.00097 * 12 11 2 14 14 O 1.42904 * 109.46948 * 300.00126 * 12 11 2 15 15 C 1.52998 * 109.47128 * 180.02562 * 12 11 2 16 16 N 1.46493 * 109.47098 * 185.00030 * 15 12 11 17 17 C 1.46504 * 119.99917 * 270.00121 * 16 15 12 18 18 C 1.34779 * 120.00382 * 89.99771 * 16 15 12 19 19 O 1.21280 * 119.99662 * 0.02562 * 18 16 15 20 20 C 1.50699 * 120.00351 * 180.02562 * 18 16 15 21 21 H 1.09002 * 109.47134 * 14.99753 * 20 18 16 22 22 F 1.39907 * 109.47123 * 255.00195 * 20 18 16 23 23 C 1.52992 * 109.47014 * 135.00220 * 20 18 16 24 24 C 1.50698 * 109.47282 * 184.99838 * 23 20 18 25 25 C 1.38238 * 120.00307 * 269.73178 * 24 23 20 26 26 C 1.38237 * 120.00024 * 179.76476 * 25 24 23 27 27 C 1.38236 * 119.99835 * 0.50170 * 26 25 24 28 28 C 1.38228 * 120.00148 * 359.74845 * 27 26 25 29 29 C 1.38234 * 120.00014 * 89.99560 * 24 23 20 30 30 H 1.08995 * 109.47208 * 275.16338 * 1 2 3 31 31 H 1.09009 * 109.46675 * 35.15807 * 1 2 3 32 32 H 1.08994 * 109.47331 * 155.15521 * 1 2 3 33 33 H 0.96997 * 119.99706 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47111 * 330.00356 * 11 2 1 35 35 H 1.09001 * 109.47274 * 209.99963 * 11 2 1 36 36 H 0.96695 * 113.99745 * 299.99832 * 14 12 11 37 37 H 1.09003 * 109.46850 * 305.00245 * 15 12 11 38 38 H 1.08999 * 109.46819 * 65.00110 * 15 12 11 39 39 H 1.09000 * 109.47362 * 90.00239 * 17 16 15 40 40 H 1.09006 * 109.46899 * 209.99623 * 17 16 15 41 41 H 1.08998 * 109.47345 * 329.99790 * 17 16 15 42 42 H 1.08998 * 109.47377 * 305.00004 * 23 20 18 43 43 H 1.09003 * 109.47482 * 65.00247 * 23 20 18 44 44 H 1.08001 * 119.99562 * 359.97438 * 25 24 23 45 45 H 1.07998 * 119.99656 * 180.22841 * 26 25 24 46 46 H 1.07999 * 119.99490 * 179.72369 * 27 26 25 47 47 H 1.07997 * 120.00373 * 179.97438 * 28 27 26 48 48 H 1.08004 * 119.99772 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1643 1.2235 -0.3682 5 6 1.5399 2.3395 0.4733 6 7 0.4225 2.2572 1.1641 7 14 2.3049 4.0086 0.1300 8 1 1.7682 4.5462 -1.1459 9 1 1.9756 4.9414 1.2376 10 1 3.7793 3.8653 0.0255 11 6 2.1974 -1.2688 0.0006 12 6 2.4524 -1.7111 -1.4418 13 1 3.0416 -0.9517 -1.9559 14 8 1.2038 -1.8822 -2.1154 15 6 3.2168 -3.0365 -1.4412 16 7 3.5653 -3.3998 -2.8169 17 6 2.6446 -4.2130 -3.6154 18 6 4.7328 -2.9860 -3.3482 19 8 5.4951 -2.3132 -2.6871 20 6 5.0910 -3.3593 -4.7636 21 1 4.2021 -3.7221 -5.2797 22 9 6.0643 -4.3641 -4.7488 23 6 5.6378 -2.1302 -5.4923 24 6 5.8808 -2.4713 -6.9399 25 6 7.1108 -2.9610 -7.3377 26 6 7.3321 -3.2784 -8.6648 27 6 6.3267 -3.0963 -9.5959 28 6 5.0984 -2.6018 -9.1990 29 6 4.8755 -2.2893 -7.8710 30 1 -0.3633 0.0925 1.0234 31 1 -0.3633 0.8403 -0.5918 32 1 -0.3634 -0.9325 -0.4318 33 1 -0.0035 3.0633 1.4951 34 1 1.6083 -2.0282 0.5147 35 1 3.1499 -1.1383 0.5143 36 1 0.6266 -2.5446 -1.7116 37 1 4.1275 -2.9304 -0.8516 38 1 2.5914 -3.8163 -1.0067 39 1 1.9582 -3.5605 -4.1550 40 1 3.2127 -4.8113 -4.3277 41 1 2.0780 -4.8720 -2.9576 42 1 4.9146 -1.3174 -5.4269 43 1 6.5751 -1.8207 -5.0298 44 1 7.8978 -3.0988 -6.6110 45 1 8.2919 -3.6645 -8.9749 46 1 6.5010 -3.3401 -10.6335 47 1 4.3130 -2.4591 -9.9265 48 1 3.9160 -1.9022 -7.5610 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278882641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:45 Heat of formation + Delta-G solvation = -102.307518 kcal Electronic energy + Delta-G solvation = -29634.983736 eV Core-core repulsion = 25411.436264 eV Total energy + Delta-G solvation = -4223.547472 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.01657 -41.09991 -40.09939 -38.93247 -36.92853 -36.06971 -34.77158 -33.32353 -31.78872 -31.67175 -30.23462 -28.16247 -27.79740 -27.24442 -25.35808 -23.58144 -23.47309 -22.31433 -22.02376 -20.57739 -19.04868 -18.68715 -17.99754 -17.68494 -17.31695 -17.16443 -16.76268 -16.50238 -16.29336 -16.04543 -15.85463 -15.75396 -15.48563 -14.94957 -14.82184 -14.73567 -14.28796 -14.12773 -13.95021 -13.71706 -13.69661 -13.62853 -13.46434 -13.04388 -13.00568 -12.85581 -12.73068 -12.53176 -12.23841 -12.21568 -12.05594 -11.99342 -11.97272 -11.86689 -11.82341 -11.34735 -10.89727 -10.63736 -9.82600 -9.72329 -9.66800 -8.68983 -7.83927 -5.32794 0.36708 0.49696 1.24268 1.41520 1.42814 1.51726 1.75153 2.47910 2.82653 3.08790 3.26455 3.47720 3.48687 3.54494 3.70068 3.76778 3.88990 4.04095 4.10481 4.16161 4.17023 4.24809 4.31064 4.46973 4.49927 4.52522 4.61947 4.67611 4.73837 4.76603 4.80479 4.92400 4.94618 4.99685 5.10004 5.16740 5.19922 5.38950 5.41515 5.56315 5.60087 5.62438 5.66974 5.73436 6.10543 6.15807 6.31459 6.87511 7.02514 7.14808 7.88114 8.28758 9.16850 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013371 B = 0.002613 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.659328 B =10714.066987 C =11693.781767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.611 5.611 3 C -0.262 4.262 4 H 0.057 0.943 5 C -0.051 4.051 6 N -0.935 5.935 7 Si 0.962 3.038 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.274 1.274 11 C 0.122 3.878 12 C 0.094 3.906 13 H 0.050 0.950 14 O -0.557 6.557 15 C 0.090 3.910 16 N -0.594 5.594 17 C 0.066 3.934 18 C 0.481 3.519 19 O -0.568 6.568 20 C 0.095 3.905 21 H 0.136 0.864 22 F -0.196 7.196 23 C -0.095 4.095 24 C -0.100 4.100 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.122 4.122 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.043 0.957 33 H 0.249 0.751 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.379 0.621 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.333 -19.368 -20.098 28.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.333 5.333 3 C -0.393 4.393 4 H 0.074 0.926 5 C -0.247 4.247 6 N -0.581 5.581 7 Si 0.791 3.209 8 H -0.213 1.213 9 H -0.215 1.215 10 H -0.199 1.199 11 C -0.005 4.005 12 C 0.030 3.970 13 H 0.068 0.932 14 O -0.364 6.364 15 C -0.033 4.033 16 N -0.325 5.325 17 C -0.075 4.075 18 C 0.267 3.733 19 O -0.446 6.446 20 C 0.056 3.944 21 H 0.153 0.847 22 F -0.177 7.177 23 C -0.133 4.133 24 C -0.100 4.100 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.142 4.142 29 C -0.140 4.140 30 H 0.019 0.981 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.227 0.773 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.137 0.863 45 H 0.158 0.842 46 H 0.163 0.837 47 H 0.162 0.838 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.878 -18.484 -20.039 28.116 hybrid contribution 0.294 0.995 0.724 1.266 sum 7.172 -17.488 -19.315 27.025 Atomic orbital electron populations 1.20477 0.82256 0.96267 0.96931 1.43929 1.02293 1.01190 1.85916 1.19389 0.98166 0.87434 1.34270 0.92565 1.25703 0.98798 1.01599 0.98551 1.70216 1.21269 1.27564 1.39091 0.85337 0.78245 0.80291 0.77048 1.21341 1.21538 1.19867 1.21510 0.96375 0.88114 0.94545 1.22668 0.84666 0.95004 0.94614 0.93167 1.86596 1.29097 1.64470 1.56198 1.22273 1.00963 0.97619 0.82469 1.47923 1.18476 1.51416 1.14733 1.22253 0.93384 0.95105 0.96791 1.21457 0.81991 0.80145 0.89755 1.90735 1.51363 1.39461 1.63078 1.21709 0.92027 0.87903 0.92720 0.84705 1.92862 1.65542 1.61998 1.97278 1.20959 1.03630 0.96299 0.92428 1.19678 0.95156 1.01099 0.94038 1.21248 0.96744 0.98966 0.97009 1.21430 1.00399 0.99860 0.92741 1.21531 0.93270 0.98724 1.00637 1.21469 0.98139 0.98655 0.95922 1.21315 0.99092 1.00092 0.93525 0.98082 0.97811 0.93809 0.94220 0.91083 0.93900 0.77251 0.90764 0.85991 0.90993 0.89577 0.87952 0.88785 0.90308 0.86263 0.84228 0.83726 0.83762 0.84742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.15 8.66 127.77 1.11 10.25 16 2 N -0.61 -31.07 2.84 -726.93 -2.07 -33.13 16 3 C -0.26 -15.15 9.65 84.03 0.81 -14.34 16 4 H 0.06 3.29 7.87 -2.91 -0.02 3.26 16 5 C -0.05 -3.00 5.09 84.86 0.43 -2.57 16 6 N -0.93 -56.81 10.76 21.65 0.23 -56.58 16 7 Si 0.96 47.38 29.58 68.60 2.03 49.41 16 8 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 9 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 11 C 0.12 4.74 5.34 86.38 0.46 5.20 16 12 C 0.09 3.10 3.48 30.60 0.11 3.21 16 13 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 14 O -0.56 -16.75 11.70 -148.98 -1.74 -18.49 16 15 C 0.09 2.24 5.11 86.38 0.44 2.68 16 16 N -0.59 -13.56 2.84 -846.76 -2.40 -15.96 16 17 C 0.07 0.86 9.54 127.77 1.22 2.08 16 18 C 0.48 13.52 7.01 87.66 0.61 14.13 16 19 O -0.57 -21.47 16.19 -3.03 -0.05 -21.52 16 20 C 0.10 2.06 3.15 29.85 0.09 2.16 16 21 H 0.14 2.02 5.86 -2.39 -0.01 2.01 16 22 F -0.20 -4.77 16.77 44.97 0.75 -4.01 16 23 C -0.10 -2.13 4.82 29.84 0.14 -1.99 16 24 C -0.10 -1.97 5.00 -19.87 -0.10 -2.07 16 25 C -0.12 -2.34 9.56 22.27 0.21 -2.12 16 26 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 27 C -0.12 -1.67 10.05 22.27 0.22 -1.44 16 28 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 29 C -0.12 -2.04 9.70 22.27 0.22 -1.83 16 30 H 0.00 0.05 7.33 -2.39 -0.02 0.03 16 31 H 0.00 0.17 7.37 -2.38 -0.02 0.15 16 32 H 0.04 1.73 7.00 -2.39 -0.02 1.71 16 33 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 35 H 0.04 1.77 8.04 -2.39 -0.02 1.75 16 36 H 0.38 7.89 8.79 -74.06 -0.65 7.24 16 37 H 0.07 2.16 7.42 -2.39 -0.02 2.14 16 38 H 0.12 2.01 7.89 -2.39 -0.02 1.99 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.83 6.23 -2.38 -0.01 0.81 16 41 H 0.10 0.85 7.89 -2.39 -0.02 0.83 16 42 H 0.09 2.11 8.09 -2.39 -0.02 2.09 16 43 H 0.08 2.04 7.99 -2.39 -0.02 2.02 16 44 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 46 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -79.21 398.97 3.49 -75.72 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.31 Total: 14.45 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.43 Total: 10.10 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.24 Total: -105.67 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.79 Total: -40.01 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.75 Total: -4.01 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -79.21 3.49 -75.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278882641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.588 kcal (2) G-P(sol) polarization free energy of solvation -79.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds