Wall clock time and date at job start Tue Mar 31 2020 21:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35960 * 116.99907 * 2 1 4 4 C 1.38657 * 120.05998 * 0.02562 * 3 2 1 5 5 C 1.38189 * 119.96661 * 179.70604 * 4 3 2 6 6 C 1.38259 * 120.09486 * 0.54968 * 5 4 3 7 7 C 1.50698 * 119.93896 * 179.72617 * 6 5 4 8 8 C 1.50701 * 109.47055 * 269.72412 * 7 6 5 9 9 O 1.21281 * 119.99835 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00140 * 179.72326 * 8 7 6 11 11 C 1.46502 * 119.99837 * 0.27315 * 10 8 7 12 12 C 1.46494 * 120.00156 * 180.27672 * 10 8 7 13 13 C 1.53006 * 109.47359 * 89.99914 * 12 10 8 14 14 C 1.52998 * 109.47154 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.46720 * 179.97438 * 14 13 12 16 16 C 1.46498 * 120.00115 * 269.99959 * 15 14 13 17 17 C 1.36945 * 119.99950 * 90.00495 * 15 14 13 18 18 H 1.07993 * 119.99771 * 22.34187 * 17 15 14 19 19 C 1.38805 * 119.99540 * 202.34331 * 17 15 14 20 20 N 1.31614 * 120.00641 * 11.34264 * 19 17 15 21 21 Si 1.86806 * 119.99614 * 191.33949 * 19 17 15 22 22 H 1.48498 * 109.46906 * 90.00025 * 21 19 17 23 23 H 1.48494 * 109.47240 * 209.99970 * 21 19 17 24 24 H 1.48497 * 109.47298 * 330.00303 * 21 19 17 25 25 C 1.38259 * 120.12420 * 359.45089 * 6 5 4 26 26 C 1.38329 * 120.03087 * 0.27160 * 25 6 5 27 27 F 1.35103 * 120.04843 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47357 * 300.00183 * 1 2 3 30 30 H 1.09001 * 109.47320 * 60.00176 * 1 2 3 31 31 H 1.08000 * 120.02179 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.95061 * 180.29181 * 5 4 3 33 33 H 1.08996 * 109.47000 * 149.72484 * 7 6 5 34 34 H 1.09001 * 109.47112 * 29.72088 * 7 6 5 35 35 H 1.09002 * 109.46790 * 89.99963 * 11 10 8 36 36 H 1.08998 * 109.47120 * 210.00063 * 11 10 8 37 37 H 1.08998 * 109.47331 * 330.00606 * 11 10 8 38 38 H 1.08996 * 109.47244 * 210.00172 * 12 10 8 39 39 H 1.09000 * 109.47038 * 329.99953 * 12 10 8 40 40 H 1.09009 * 109.46897 * 300.00167 * 13 12 10 41 41 H 1.09000 * 109.47014 * 60.00024 * 13 12 10 42 42 H 1.08996 * 109.47363 * 300.00205 * 14 13 12 43 43 H 1.09000 * 109.47124 * 60.00112 * 14 13 12 44 44 H 1.08996 * 109.47259 * 94.21898 * 16 15 14 45 45 H 1.09006 * 109.47114 * 214.21366 * 16 15 14 46 46 H 1.09000 * 109.47568 * 334.21055 * 16 15 14 47 47 H 0.97008 * 120.00266 * 179.97438 * 20 19 17 48 48 H 1.08003 * 119.98566 * 180.25486 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3022 3.6778 0.0008 7 6 3.9849 5.0213 0.0013 8 6 4.2123 5.4697 -1.4194 9 8 3.8548 4.7676 -2.3414 10 7 4.8075 6.6537 -1.6653 11 6 5.2387 7.5020 -0.5514 12 6 5.0230 7.0923 -3.0463 13 6 3.8097 7.8937 -3.5222 14 6 4.0352 8.3524 -4.9643 15 7 2.8731 9.1192 -5.4201 16 6 1.7537 8.4348 -6.0718 17 6 2.8332 10.4758 -5.2371 18 1 3.7506 11.0298 -5.1038 19 6 1.6137 11.1386 -5.2230 20 7 0.4924 10.4524 -5.1606 21 14 1.5642 13.0047 -5.2926 22 1 1.5058 13.4457 -6.7094 23 1 0.3622 13.4952 -4.5716 24 1 2.7850 13.5565 -4.6523 25 6 4.0579 2.5200 0.0002 26 6 3.4333 1.2857 -0.0001 27 9 4.1713 0.1541 -0.0012 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2136 2.3201 0.0005 32 1 1.3341 4.5115 0.0119 33 1 4.9429 4.9418 0.5150 34 1 3.3560 5.7482 0.5154 35 1 6.2636 7.2502 -0.2787 36 1 5.1893 8.5487 -0.8516 37 1 4.5843 7.3382 0.3047 38 1 5.9136 7.7189 -3.0936 39 1 5.1573 6.2211 -3.6874 40 1 2.9190 7.2670 -3.4748 41 1 3.6754 8.7649 -2.8810 42 1 4.9257 8.9791 -5.0113 43 1 4.1696 7.4814 -5.6058 44 1 0.9926 8.1949 -5.3294 45 1 1.3249 9.0848 -6.8347 46 1 2.1105 7.5157 -6.5365 47 1 -0.3599 10.9157 -5.1503 48 1 5.1363 2.5792 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280832642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:41 Heat of formation + Delta-G solvation = -66.713394 kcal Electronic energy + Delta-G solvation = -28939.114390 eV Core-core repulsion = 24717.110395 eV Total energy + Delta-G solvation = -4222.003995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.90622 -40.46815 -39.70106 -37.80620 -36.17600 -35.23845 -32.81599 -31.93656 -30.94448 -30.19799 -28.46722 -26.96407 -26.91259 -25.81518 -24.88570 -23.01654 -22.46456 -21.52692 -20.16364 -19.12183 -18.51236 -17.20797 -17.13397 -16.95281 -16.68135 -16.34206 -15.93184 -15.41697 -15.23463 -15.04303 -14.73056 -14.48818 -14.33513 -14.12583 -13.63237 -13.46088 -13.29613 -12.99444 -12.83547 -12.65849 -12.51553 -12.46722 -12.24626 -12.02011 -11.80869 -11.45583 -11.38053 -11.30990 -11.30098 -10.88446 -10.82289 -10.65766 -10.39286 -10.03013 -9.88515 -9.71483 -9.66667 -9.12221 -8.57198 -8.47785 -8.32446 -6.70295 -5.68179 -3.13829 0.94398 0.98952 2.70928 2.86197 3.02963 3.38474 3.42194 3.44683 3.45880 4.00440 4.35974 4.45322 4.52293 4.61420 4.68737 4.83734 4.91689 4.95229 5.03748 5.10897 5.16817 5.21153 5.29268 5.35315 5.43347 5.46500 5.56239 5.61563 5.68125 5.83358 5.90135 5.91794 6.08533 6.16116 6.24974 6.28961 6.39074 6.53543 6.71307 6.86587 6.91194 7.01172 7.17612 7.45415 7.46880 7.78838 7.85256 8.27573 8.44625 9.28362 9.92501 10.42230 11.36817 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002241 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.401013 B =12493.706611 C =13358.698596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.093 3.907 4 C -0.178 4.178 5 C -0.071 4.071 6 C -0.071 4.071 7 C -0.098 4.098 8 C 0.510 3.490 9 O -0.528 6.528 10 N -0.615 5.615 11 C 0.076 3.924 12 C 0.116 3.884 13 C -0.149 4.149 14 C 0.156 3.844 15 N -0.604 5.604 16 C 0.165 3.835 17 C -0.251 4.251 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.280 1.280 25 C -0.101 4.101 26 C 0.069 3.931 27 F -0.135 7.135 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.026 0.974 45 H 0.044 0.956 46 H -0.004 1.004 47 H 0.251 0.749 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -15.972 15.998 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.047 3.953 4 C -0.197 4.197 5 C -0.090 4.090 6 C -0.072 4.072 7 C -0.138 4.138 8 C 0.298 3.702 9 O -0.404 6.404 10 N -0.348 5.348 11 C -0.067 4.067 12 C -0.007 4.007 13 C -0.190 4.190 14 C 0.028 3.972 15 N -0.326 5.326 16 C 0.020 3.980 17 C -0.380 4.380 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.554 5.554 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.120 4.120 26 C 0.049 3.951 27 F -0.113 7.113 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.015 0.985 47 H 0.061 0.939 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.317 -16.515 15.470 23.245 hybrid contribution -0.365 1.135 0.116 1.197 sum 4.952 -15.381 15.586 22.450 Atomic orbital electron populations 1.23123 0.77884 1.04222 1.01675 1.86120 1.21772 1.25874 1.88791 1.18987 0.90801 0.85616 0.99903 1.21098 1.00332 0.91328 1.06924 1.20895 0.93783 0.97533 0.96753 1.19030 0.93276 0.93398 1.01515 1.20677 1.02622 0.94864 0.95636 1.20438 0.77822 0.80990 0.90987 1.90742 1.49481 1.54012 1.46156 1.47958 1.59991 1.19036 1.07849 1.21818 0.99481 0.96037 0.89396 1.21642 0.98939 0.99247 0.80856 1.22599 0.96789 0.99101 1.00522 1.20733 0.91024 0.94084 0.91392 1.43980 1.17883 1.04036 1.66706 1.20777 0.89288 0.92150 0.95770 1.19219 0.92107 0.82541 1.44167 0.91444 1.25038 0.95733 0.97899 1.01258 1.70081 0.96748 1.33603 1.55013 0.86257 0.76959 0.85688 0.77638 1.21543 1.21815 1.20575 1.20787 1.00763 0.89742 1.00722 1.16845 0.85905 0.82853 1.09503 1.91489 1.76421 1.49029 1.94378 0.87997 0.92427 0.92228 0.84367 0.84916 0.87908 0.87596 0.92706 0.90482 0.91218 0.91015 0.90368 0.92439 0.92048 0.93990 0.94477 0.95543 0.93773 0.98512 0.93856 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.57 10.36 -19.61 -0.20 -3.77 16 3 C 0.09 1.12 6.69 -39.18 -0.26 0.86 16 4 C -0.18 -1.87 9.04 -39.44 -0.36 -2.22 16 5 C -0.07 -0.77 9.69 -39.59 -0.38 -1.16 16 6 C -0.07 -0.79 4.37 -104.61 -0.46 -1.25 16 7 C -0.10 -0.93 4.38 -29.04 -0.13 -1.05 16 8 C 0.51 7.06 7.67 -10.98 -0.08 6.98 16 9 O -0.53 -9.66 15.61 5.56 0.09 -9.58 16 10 N -0.61 -7.92 2.87 -181.57 -0.52 -8.44 16 11 C 0.08 0.67 10.25 59.85 0.61 1.28 16 12 C 0.12 1.72 5.41 -4.04 -0.02 1.69 16 13 C -0.15 -2.83 5.86 -26.73 -0.16 -2.99 16 14 C 0.16 3.26 5.71 -4.04 -0.02 3.24 16 15 N -0.60 -15.68 2.93 -181.13 -0.53 -16.21 16 16 C 0.16 4.28 9.01 59.85 0.54 4.82 16 17 C -0.25 -6.95 9.67 -15.06 -0.15 -7.10 16 18 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 19 C 0.00 -0.04 5.13 -17.44 -0.09 -0.13 16 20 N -0.91 -26.92 10.58 55.49 0.59 -26.34 16 21 Si 0.90 21.92 29.57 -169.99 -5.03 16.90 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.10 -1.15 9.67 -39.54 -0.38 -1.53 16 26 C 0.07 0.87 7.31 -39.30 -0.29 0.59 16 27 F -0.13 -1.82 17.11 2.25 0.04 -1.78 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.11 0.79 7.34 -51.93 -0.38 0.41 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 38 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 39 H 0.08 1.25 7.42 -51.93 -0.39 0.86 16 40 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 43 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 44 H 0.03 0.74 7.42 -51.93 -0.39 0.35 16 45 H 0.04 1.21 7.19 -51.93 -0.37 0.84 16 46 H 0.00 -0.09 7.84 -51.93 -0.41 -0.49 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.14 1.32 8.06 -52.48 -0.42 0.90 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -35.49 400.23 -7.73 -43.22 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -7.56 Total: -3.22 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.63 Total: 3.20 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.46 Total: -50.98 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.12 Total: -13.35 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.49 -7.73 -43.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280832642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.494 kcal (2) G-P(sol) polarization free energy of solvation -35.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds