Wall clock time and date at job start Tue Mar 31 2020 21:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35960 * 116.99907 * 2 1 4 4 C 1.38657 * 120.05998 * 0.02562 * 3 2 1 5 5 C 1.38189 * 119.96661 * 179.70604 * 4 3 2 6 6 C 1.38259 * 120.09486 * 0.54968 * 5 4 3 7 7 C 1.50698 * 119.93896 * 179.72617 * 6 5 4 8 8 C 1.50701 * 109.47055 * 269.72412 * 7 6 5 9 9 O 1.21281 * 119.99835 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00140 * 179.72326 * 8 7 6 11 11 C 1.46502 * 119.99837 * 0.27315 * 10 8 7 12 12 C 1.46494 * 120.00156 * 180.27672 * 10 8 7 13 13 C 1.53006 * 109.47359 * 89.99914 * 12 10 8 14 14 C 1.52998 * 109.47154 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.46720 * 179.97438 * 14 13 12 16 16 C 1.46498 * 120.00115 * 269.99959 * 15 14 13 17 17 C 1.36945 * 119.99950 * 90.00495 * 15 14 13 18 18 H 1.07993 * 119.99771 * 22.34187 * 17 15 14 19 19 C 1.38805 * 119.99540 * 202.34331 * 17 15 14 20 20 N 1.31614 * 120.00641 * 11.34264 * 19 17 15 21 21 Si 1.86806 * 119.99614 * 191.33949 * 19 17 15 22 22 H 1.48498 * 109.46906 * 90.00025 * 21 19 17 23 23 H 1.48494 * 109.47240 * 209.99970 * 21 19 17 24 24 H 1.48497 * 109.47298 * 330.00303 * 21 19 17 25 25 C 1.38259 * 120.12420 * 359.45089 * 6 5 4 26 26 C 1.38329 * 120.03087 * 0.27160 * 25 6 5 27 27 F 1.35103 * 120.04843 * 179.97438 * 26 25 6 28 28 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47357 * 300.00183 * 1 2 3 30 30 H 1.09001 * 109.47320 * 60.00176 * 1 2 3 31 31 H 1.08000 * 120.02179 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.95061 * 180.29181 * 5 4 3 33 33 H 1.08996 * 109.47000 * 149.72484 * 7 6 5 34 34 H 1.09001 * 109.47112 * 29.72088 * 7 6 5 35 35 H 1.09002 * 109.46790 * 89.99963 * 11 10 8 36 36 H 1.08998 * 109.47120 * 210.00063 * 11 10 8 37 37 H 1.08998 * 109.47331 * 330.00606 * 11 10 8 38 38 H 1.08996 * 109.47244 * 210.00172 * 12 10 8 39 39 H 1.09000 * 109.47038 * 329.99953 * 12 10 8 40 40 H 1.09009 * 109.46897 * 300.00167 * 13 12 10 41 41 H 1.09000 * 109.47014 * 60.00024 * 13 12 10 42 42 H 1.08996 * 109.47363 * 300.00205 * 14 13 12 43 43 H 1.09000 * 109.47124 * 60.00112 * 14 13 12 44 44 H 1.08996 * 109.47259 * 94.21898 * 16 15 14 45 45 H 1.09006 * 109.47114 * 214.21366 * 16 15 14 46 46 H 1.09000 * 109.47568 * 334.21055 * 16 15 14 47 47 H 0.97008 * 120.00266 * 179.97438 * 20 19 17 48 48 H 1.08003 * 119.98566 * 180.25486 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3022 3.6778 0.0008 7 6 3.9849 5.0213 0.0013 8 6 4.2123 5.4697 -1.4194 9 8 3.8548 4.7676 -2.3414 10 7 4.8075 6.6537 -1.6653 11 6 5.2387 7.5020 -0.5514 12 6 5.0230 7.0923 -3.0463 13 6 3.8097 7.8937 -3.5222 14 6 4.0352 8.3524 -4.9643 15 7 2.8731 9.1192 -5.4201 16 6 1.7537 8.4348 -6.0718 17 6 2.8332 10.4758 -5.2371 18 1 3.7506 11.0298 -5.1038 19 6 1.6137 11.1386 -5.2230 20 7 0.4924 10.4524 -5.1606 21 14 1.5642 13.0047 -5.2926 22 1 1.5058 13.4457 -6.7094 23 1 0.3622 13.4952 -4.5716 24 1 2.7850 13.5565 -4.6523 25 6 4.0579 2.5200 0.0002 26 6 3.4333 1.2857 -0.0001 27 9 4.1713 0.1541 -0.0012 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2136 2.3201 0.0005 32 1 1.3341 4.5115 0.0119 33 1 4.9429 4.9418 0.5150 34 1 3.3560 5.7482 0.5154 35 1 6.2636 7.2502 -0.2787 36 1 5.1893 8.5487 -0.8516 37 1 4.5843 7.3382 0.3047 38 1 5.9136 7.7189 -3.0936 39 1 5.1573 6.2211 -3.6874 40 1 2.9190 7.2670 -3.4748 41 1 3.6754 8.7649 -2.8810 42 1 4.9257 8.9791 -5.0113 43 1 4.1696 7.4814 -5.6058 44 1 0.9926 8.1949 -5.3294 45 1 1.3249 9.0848 -6.8347 46 1 2.1105 7.5157 -6.5365 47 1 -0.3599 10.9157 -5.1503 48 1 5.1363 2.5792 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280832642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:41 Heat of formation + Delta-G solvation = -88.090792 kcal Electronic energy + Delta-G solvation = -28940.041383 eV Core-core repulsion = 24717.110395 eV Total energy + Delta-G solvation = -4222.930989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.87004 -41.34876 -40.65041 -38.65692 -37.85701 -36.59763 -34.19699 -33.23411 -31.88589 -31.75462 -29.25876 -28.14530 -27.80738 -27.67630 -26.23836 -23.96161 -23.82821 -22.60642 -21.91377 -20.12394 -19.31567 -18.75950 -18.10918 -18.02619 -17.85628 -17.19103 -17.11290 -16.61437 -16.40624 -16.08272 -15.85011 -15.80045 -15.36893 -15.26112 -15.08350 -14.77412 -14.65599 -14.21266 -14.16395 -13.82628 -13.29958 -13.25134 -13.17566 -13.13109 -13.05265 -12.79036 -12.64259 -12.59946 -12.50355 -12.39711 -12.25093 -12.11245 -12.03889 -12.01933 -11.86077 -11.38729 -10.83130 -10.64100 -9.96503 -9.61638 -9.17468 -8.78271 -7.81336 -5.30218 0.09359 0.14805 1.46940 1.49074 1.57552 1.69434 2.07788 2.17407 2.51918 2.56686 3.16303 3.32904 3.56272 3.68698 3.70702 3.77537 3.97947 4.15462 4.18246 4.32779 4.34465 4.34778 4.42134 4.43629 4.46737 4.57688 4.62928 4.64103 4.69317 4.78088 4.82486 4.84997 4.86258 4.93453 5.00107 5.03950 5.10793 5.27579 5.29736 5.43088 5.45799 5.60723 5.64241 5.65367 5.68883 6.23903 6.33849 6.49384 7.15016 7.25975 7.87163 8.33150 9.23102 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015227 B = 0.002241 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.401013 B =12493.706611 C =13358.698596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.082 3.918 4 C -0.180 4.180 5 C -0.080 4.080 6 C -0.081 4.081 7 C -0.088 4.088 8 C 0.503 3.497 9 O -0.583 6.583 10 N -0.617 5.617 11 C 0.068 3.932 12 C 0.126 3.874 13 C -0.127 4.127 14 C 0.151 3.849 15 N -0.622 5.622 16 C 0.180 3.820 17 C -0.258 4.258 18 H 0.077 0.923 19 C -0.059 4.059 20 N -0.943 5.943 21 Si 0.972 3.028 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.263 1.263 25 C -0.103 4.103 26 C 0.039 3.961 27 F -0.147 7.147 28 H 0.121 0.879 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.047 0.953 44 H -0.003 1.003 45 H 0.020 0.980 46 H 0.022 0.978 47 H 0.246 0.754 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -14.872 17.606 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.036 3.964 4 C -0.199 4.199 5 C -0.098 4.098 6 C -0.082 4.082 7 C -0.127 4.127 8 C 0.292 3.708 9 O -0.463 6.463 10 N -0.349 5.349 11 C -0.073 4.073 12 C 0.002 3.998 13 C -0.169 4.169 14 C 0.024 3.976 15 N -0.345 5.345 16 C 0.034 3.966 17 C -0.388 4.388 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.591 5.591 21 Si 0.800 3.200 22 H -0.215 1.215 23 H -0.223 1.223 24 H -0.188 1.188 25 C -0.122 4.122 26 C 0.019 3.981 27 F -0.125 7.125 28 H 0.139 0.861 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.178 0.822 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.149 0.851 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.015 0.985 45 H 0.039 0.961 46 H 0.040 0.960 47 H 0.056 0.944 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.779 -15.406 17.121 24.009 hybrid contribution -0.801 0.739 -0.399 1.161 sum 5.978 -14.666 16.721 23.031 Atomic orbital electron populations 1.23426 0.75779 1.05925 1.02613 1.86091 1.24059 1.25926 1.88770 1.19193 0.90894 0.86355 0.99977 1.21364 1.01469 0.90779 1.06244 1.21205 0.94194 0.98145 0.96261 1.19277 0.93523 0.94078 1.01310 1.20738 1.04816 0.94263 0.92928 1.21231 0.76640 0.80633 0.92270 1.90720 1.51748 1.55686 1.48152 1.48062 1.59517 1.19338 1.07968 1.22129 1.01665 0.94973 0.88573 1.21380 0.97679 0.98478 0.82269 1.22269 0.97275 0.98216 0.99123 1.20929 0.89783 0.94324 0.92515 1.44255 1.18722 1.04239 1.67322 1.20491 0.89087 0.92580 0.94399 1.19598 0.92457 0.83627 1.43147 0.90540 1.25869 0.95446 1.02476 1.01576 1.70269 0.97075 1.35211 1.56517 0.85183 0.77178 0.80208 0.77383 1.21508 1.22309 1.18788 1.21009 1.01669 0.89408 1.00112 1.17225 0.86548 0.83081 1.11227 1.91445 1.76723 1.49706 1.94667 0.86052 0.90827 0.91859 0.82184 0.83688 0.84404 0.85075 0.89885 0.90997 0.88808 0.88056 0.91654 0.96196 0.93549 0.92146 0.93445 0.98456 0.96144 0.95959 0.94444 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -7.68 10.36 -93.09 -0.96 -8.64 16 3 C 0.08 1.98 6.69 22.53 0.15 2.13 16 4 C -0.18 -3.66 9.04 22.36 0.20 -3.46 16 5 C -0.08 -1.65 9.69 22.26 0.22 -1.43 16 6 C -0.08 -1.68 4.37 -19.86 -0.09 -1.77 16 7 C -0.09 -1.41 4.38 29.10 0.13 -1.29 16 8 C 0.50 13.13 7.67 87.66 0.67 13.80 16 9 O -0.58 -21.41 15.61 -3.03 -0.05 -21.46 16 10 N -0.62 -14.51 2.87 -846.76 -2.43 -16.94 16 11 C 0.07 0.94 10.25 127.77 1.31 2.25 16 12 C 0.13 3.53 5.41 86.38 0.47 4.00 16 13 C -0.13 -4.82 5.86 30.60 0.18 -4.64 16 14 C 0.15 6.20 5.71 86.38 0.49 6.69 16 15 N -0.62 -32.39 2.93 -726.96 -2.13 -34.52 16 16 C 0.18 9.55 9.01 127.77 1.15 10.70 16 17 C -0.26 -14.24 9.67 84.03 0.81 -13.42 16 18 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 19 C -0.06 -3.36 5.13 84.86 0.44 -2.92 16 20 N -0.94 -57.08 10.58 21.65 0.23 -56.85 16 21 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 25 C -0.10 -2.28 9.67 22.30 0.22 -2.07 16 26 C 0.04 1.00 7.31 22.45 0.16 1.17 16 27 F -0.15 -4.11 17.11 44.97 0.77 -3.34 16 28 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 30 H 0.06 0.76 7.66 -2.39 -0.02 0.75 16 31 H 0.16 2.36 6.30 -2.91 -0.02 2.34 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.14 1.25 8.05 -2.39 -0.02 1.23 16 34 H 0.13 1.46 7.34 -2.39 -0.02 1.44 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 37 H 0.09 0.85 6.43 -2.39 -0.02 0.84 16 38 H 0.10 2.27 8.07 -2.39 -0.02 2.25 16 39 H 0.06 2.04 7.42 -2.39 -0.02 2.02 16 40 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 2.26 8.03 -2.39 -0.02 2.24 16 43 H 0.05 1.84 7.86 -2.39 -0.02 1.82 16 44 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 45 H 0.02 1.14 7.19 -2.38 -0.02 1.12 16 46 H 0.02 1.03 7.84 -2.39 -0.02 1.01 16 47 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 48 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -79.98 400.23 6.02 -73.95 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.95 Total: 9.73 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 7.62 Total: 11.07 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -4.33 Total: -108.30 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.01 Total: -30.10 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.77 Total: -3.34 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -79.98 6.02 -73.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280832642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.140 kcal (2) G-P(sol) polarization free energy of solvation -79.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds