Wall clock time and date at job start Tue Mar 31 2020 21:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35948 * 117.00499 * 2 1 4 4 C 1.38664 * 120.06477 * 359.72167 * 3 2 1 5 5 C 1.38175 * 119.97332 * 180.23718 * 4 3 2 6 6 C 1.38263 * 120.09620 * 0.06003 * 5 4 3 7 7 C 1.50702 * 119.93716 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46958 * 269.97845 * 7 6 5 9 9 C 1.50702 * 109.47338 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99228 * 0.02562 * 9 8 7 11 11 N 1.34767 * 120.00401 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00077 * 359.97438 * 11 9 8 13 13 C 1.46498 * 120.00202 * 180.02562 * 11 9 8 14 14 C 1.52999 * 109.47446 * 89.99542 * 13 11 9 15 15 H 1.09005 * 109.47073 * 65.00132 * 14 13 11 16 16 C 1.52993 * 109.47664 * 185.00126 * 14 13 11 17 17 N 1.46502 * 109.47272 * 305.00366 * 14 13 11 18 18 C 1.36933 * 120.00212 * 154.99470 * 17 14 13 19 19 H 1.08001 * 120.00100 * 0.02562 * 18 17 14 20 20 C 1.38810 * 119.99996 * 180.02562 * 18 17 14 21 21 N 1.31618 * 120.00384 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99957 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47066 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46995 * 119.99974 * 22 20 18 25 25 H 1.48507 * 109.46930 * 239.99865 * 22 20 18 26 26 C 1.38254 * 120.12303 * 359.96068 * 6 5 4 27 27 C 1.38326 * 120.03416 * 0.02562 * 26 6 5 28 28 F 1.35098 * 120.05006 * 179.97438 * 27 26 6 29 29 H 1.09001 * 109.46836 * 300.00713 * 1 2 3 30 30 H 1.09001 * 109.46915 * 60.00028 * 1 2 3 31 31 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 32 32 H 1.08008 * 120.01117 * 0.25210 * 4 3 2 33 33 H 1.07999 * 119.95287 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47166 * 29.97963 * 7 6 5 35 35 H 1.08994 * 109.46843 * 149.98219 * 7 6 5 36 36 H 1.08999 * 109.47719 * 300.00206 * 8 7 6 37 37 H 1.09007 * 109.47228 * 60.00357 * 8 7 6 38 38 H 1.09006 * 109.46700 * 90.00622 * 12 11 9 39 39 H 1.09001 * 109.47504 * 210.00307 * 12 11 9 40 40 H 1.08998 * 109.47373 * 330.00769 * 12 11 9 41 41 H 1.09002 * 109.47637 * 209.99458 * 13 11 9 42 42 H 1.09003 * 109.47115 * 329.99775 * 13 11 9 43 43 H 1.09007 * 109.47363 * 300.00172 * 16 14 13 44 44 H 1.08994 * 109.47309 * 60.00037 * 16 14 13 45 45 H 1.09004 * 109.47772 * 180.02562 * 16 14 13 46 46 H 0.97003 * 119.99934 * 334.99946 * 17 14 13 47 47 H 0.96998 * 120.00413 * 180.02562 * 21 20 18 48 48 H 1.08004 * 119.98065 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2925 2.3751 -0.0058 5 6 1.9218 3.6052 -0.0108 6 6 3.3026 3.6775 -0.0112 7 6 3.9853 5.0210 -0.0172 8 6 4.2167 5.4690 -1.4616 9 6 4.9000 6.8122 -1.4677 10 8 5.1752 7.3572 -0.4197 11 7 5.2052 7.4077 -2.6375 12 6 4.8733 6.7491 -3.9033 13 6 5.8700 8.7132 -2.6433 14 6 7.3868 8.5132 -2.6431 15 1 7.6899 8.0312 -3.5726 16 6 8.0804 9.8717 -2.5234 17 7 7.7679 7.6688 -1.5082 18 6 8.9235 6.9358 -1.5578 19 1 9.5543 6.9806 -2.4333 20 6 9.2843 6.1353 -0.4827 21 7 8.5154 6.0803 0.5841 22 14 10.8612 5.1360 -0.5500 23 1 11.5408 5.3707 -1.8493 24 1 11.7570 5.5497 0.5597 25 1 10.5387 3.6927 -0.4141 26 6 4.0580 2.5196 -0.0058 27 6 3.4334 1.2854 -0.0006 28 9 4.1713 0.1538 0.0042 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2138 2.3201 -0.0063 33 1 1.3344 4.5114 -0.0149 34 1 3.3564 5.7504 0.4931 35 1 4.9431 4.9440 0.4972 36 1 4.8456 4.7396 -1.9720 37 1 3.2588 5.5460 -1.9761 38 1 3.8748 7.0515 -4.2193 39 1 5.5982 7.0381 -4.6643 40 1 4.8997 5.6679 -3.7682 41 1 5.5767 9.2664 -3.5356 42 1 5.5773 9.2739 -1.7556 43 1 7.7970 10.5001 -3.3679 44 1 7.7774 10.3537 -1.5941 45 1 9.1611 9.7293 -2.5237 46 1 7.2016 7.6288 -0.7217 47 1 8.7677 5.5211 1.3356 48 1 5.1365 2.5788 -0.0057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283642227.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:51 Heat of formation + Delta-G solvation = -104.601079 kcal Electronic energy + Delta-G solvation = -29762.615338 eV Core-core repulsion = 25538.968409 eV Total energy + Delta-G solvation = -4223.646928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.87695 -41.16310 -40.73773 -38.85095 -37.54981 -35.87786 -34.49654 -33.76203 -31.75130 -30.78694 -30.26312 -28.45482 -27.98630 -26.80465 -25.71809 -24.71804 -23.78904 -22.21259 -21.44848 -19.95080 -19.31159 -19.20650 -18.09691 -17.97443 -17.45112 -17.18229 -17.03835 -16.77255 -16.44955 -16.06308 -15.81019 -15.56483 -15.35766 -15.14432 -14.93509 -14.74126 -14.31837 -13.99405 -13.78021 -13.63532 -13.55821 -13.34510 -13.22655 -13.06627 -12.97436 -12.90544 -12.82744 -12.65026 -12.37588 -12.36101 -12.13483 -12.08809 -11.86466 -11.84166 -11.78667 -11.55024 -10.94586 -10.56163 -9.96465 -9.36283 -9.13102 -8.86870 -7.82357 -5.10799 0.09554 0.18181 1.43204 1.43772 1.53267 1.91176 2.19358 2.31388 2.54324 2.58403 3.18996 3.46617 3.58859 3.71598 3.90433 4.01138 4.09036 4.18924 4.23232 4.29451 4.31113 4.39660 4.41004 4.42437 4.50505 4.56863 4.64834 4.68836 4.74110 4.75836 4.81713 4.89826 4.92177 4.97727 5.04568 5.10568 5.11054 5.17178 5.26651 5.30812 5.50128 5.56803 5.57124 5.65217 5.84419 6.30042 6.36245 6.65486 7.42152 7.53073 8.30499 8.54750 9.38472 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011569 B = 0.003170 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.578552 B = 8831.059944 C =10560.930196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.336 6.336 3 C 0.085 3.915 4 C -0.167 4.167 5 C -0.072 4.072 6 C -0.085 4.085 7 C -0.054 4.054 8 C -0.116 4.116 9 C 0.507 3.493 10 O -0.572 6.572 11 N -0.613 5.613 12 C 0.077 3.923 13 C 0.116 3.884 14 C 0.143 3.857 15 H 0.045 0.955 16 C -0.154 4.154 17 N -0.737 5.737 18 C -0.231 4.231 19 H 0.068 0.932 20 C -0.076 4.076 21 N -0.956 5.956 22 Si 0.960 3.040 23 H -0.266 1.266 24 H -0.298 1.298 25 H -0.298 1.298 26 C -0.123 4.123 27 C 0.039 3.961 28 F -0.152 7.152 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.034 0.966 45 H 0.033 0.967 46 H 0.386 0.614 47 H 0.243 0.757 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.657 -4.856 -9.093 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.039 3.961 4 C -0.185 4.185 5 C -0.090 4.090 6 C -0.085 4.085 7 C -0.092 4.092 8 C -0.156 4.156 9 C 0.297 3.703 10 O -0.450 6.450 11 N -0.345 5.345 12 C -0.065 4.065 13 C -0.008 4.008 14 C 0.034 3.966 15 H 0.063 0.937 16 C -0.215 4.215 17 N -0.381 5.381 18 C -0.364 4.364 19 H 0.086 0.914 20 C -0.269 4.269 21 N -0.607 5.607 22 Si 0.790 3.210 23 H -0.191 1.191 24 H -0.226 1.226 25 H -0.225 1.225 26 C -0.142 4.142 27 C 0.020 3.980 28 F -0.130 7.130 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.193 0.807 33 H 0.183 0.817 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.145 0.855 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.135 0.865 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.223 0.777 47 H 0.052 0.948 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.282 -4.884 -8.647 24.395 hybrid contribution 1.635 -0.855 0.776 2.002 sum -20.647 -5.739 -7.870 22.829 Atomic orbital electron populations 1.23464 0.75474 1.05905 1.03004 1.86108 1.24344 1.25873 1.88747 1.19104 0.90072 0.86836 1.00066 1.21466 1.01734 0.90006 1.05276 1.21254 0.92677 0.98819 0.96260 1.19624 0.94323 0.93370 1.01212 1.20135 1.00102 0.92851 0.96139 1.21568 1.02528 0.93043 0.98441 1.21064 0.78294 0.87727 0.83230 1.90670 1.54859 1.66580 1.32933 1.47765 1.59128 1.20728 1.06882 1.21980 1.02032 0.98187 0.84336 1.21744 0.91285 0.84655 1.03120 1.20984 0.93686 0.91110 0.90867 0.93684 1.22258 1.00068 0.98197 1.00936 1.42984 1.25412 1.51673 1.18078 1.19578 0.99274 1.17618 0.99910 0.91372 1.25457 1.01671 1.02886 0.96858 1.69937 1.39621 1.44375 1.06763 0.85264 0.80273 0.78141 0.77290 1.19078 1.22617 1.22521 1.20980 1.00881 0.90597 1.01770 1.17241 0.87106 0.82408 1.11260 1.91436 1.77147 1.49798 1.94665 0.90979 0.90683 0.86454 0.80695 0.81690 0.89612 0.93769 0.89549 0.85481 0.89708 0.90511 0.91077 0.86506 0.92472 0.90140 0.94694 0.94804 0.77727 0.94799 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -7.41 10.36 -92.97 -0.96 -8.37 16 3 C 0.09 2.02 6.69 22.53 0.15 2.17 16 4 C -0.17 -2.80 9.04 22.36 0.20 -2.60 16 5 C -0.07 -1.32 9.69 22.26 0.22 -1.11 16 6 C -0.08 -2.20 5.13 -19.85 -0.10 -2.30 16 7 C -0.05 -1.68 4.63 29.85 0.14 -1.54 16 8 C -0.12 -3.29 4.23 29.85 0.13 -3.17 16 9 C 0.51 18.75 6.97 87.66 0.61 19.36 16 10 O -0.57 -27.23 13.30 -3.04 -0.04 -27.27 16 11 N -0.61 -18.99 2.77 -846.75 -2.35 -21.34 16 12 C 0.08 1.56 10.24 127.77 1.31 2.87 16 13 C 0.12 3.70 5.14 86.38 0.44 4.14 16 14 C 0.14 5.67 3.20 44.99 0.14 5.81 16 15 H 0.05 1.75 8.08 -2.38 -0.02 1.73 16 16 C -0.15 -5.51 9.49 71.98 0.68 -4.83 16 17 N -0.74 -39.01 4.52 -322.95 -1.46 -40.47 16 18 C -0.23 -13.38 9.93 84.03 0.83 -12.55 16 19 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 20 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 21 N -0.96 -62.17 13.06 21.65 0.28 -61.89 16 22 Si 0.96 48.70 29.55 68.60 2.03 50.73 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 25 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 26 C -0.12 -3.73 9.67 22.29 0.22 -3.51 16 27 C 0.04 1.18 7.31 22.45 0.16 1.34 16 28 F -0.15 -5.11 17.11 44.97 0.77 -4.34 16 29 H 0.07 0.53 7.67 -2.39 -0.02 0.51 16 30 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.18 1.53 6.30 -2.91 -0.02 1.51 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.09 2.49 8.04 -2.39 -0.02 2.47 16 35 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 36 H 0.09 2.56 7.40 -2.39 -0.02 2.54 16 37 H 0.13 2.42 8.11 -2.38 -0.02 2.41 16 38 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 40 H 0.07 1.42 6.44 -2.39 -0.02 1.41 16 41 H 0.12 2.59 8.07 -2.39 -0.02 2.57 16 42 H 0.06 2.09 7.42 -2.39 -0.02 2.07 16 43 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.39 22.67 5.02 -92.71 -0.47 22.21 16 47 H 0.24 15.48 8.31 -92.71 -0.77 14.71 16 48 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -83.83 397.98 5.48 -78.36 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: 0.50 Total: 33.37 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.72 Total: 1.24 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -3.53 Total: -123.70 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.00 Total: -35.64 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.77 Total: -4.34 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -83.83 5.48 -78.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283642227.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.244 kcal (2) G-P(sol) polarization free energy of solvation -83.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds