Wall clock time and date at job start Tue Mar 31 2020 21:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47032 * 2 1 4 4 C 1.36945 * 119.99848 * 272.50708 * 3 2 1 5 5 H 1.07999 * 119.99966 * 38.47261 * 4 3 2 6 6 C 1.38805 * 119.99890 * 218.47952 * 4 3 2 7 7 N 1.31625 * 120.00540 * 22.07587 * 6 4 3 8 8 Si 1.86801 * 119.99912 * 202.07916 * 6 4 3 9 9 H 1.48501 * 109.47007 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47111 * 119.99952 * 8 6 4 11 11 H 1.48501 * 109.47187 * 239.99650 * 8 6 4 12 12 C 1.46494 * 120.00450 * 92.50594 * 3 2 1 13 13 C 1.53004 * 109.47452 * 270.00018 * 12 3 2 14 14 C 1.52996 * 109.47453 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.47004 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99377 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00643 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99572 * 179.97438 * 16 15 14 19 19 H 1.09000 * 109.46647 * 304.99629 * 18 16 15 20 20 C 1.52994 * 109.47272 * 64.99622 * 18 16 15 21 21 O 1.42898 * 109.46997 * 185.00098 * 18 16 15 22 22 C 1.35946 * 116.99832 * 154.95339 * 21 18 16 23 23 C 1.38708 * 120.02702 * 185.78341 * 22 21 18 24 24 C 1.38151 * 119.96586 * 180.29633 * 23 22 21 25 25 C 1.38457 * 120.03339 * 359.44611 * 24 23 22 26 26 F 1.35096 * 119.97165 * 180.27799 * 25 24 23 27 27 C 1.38462 * 120.05568 * 0.25716 * 25 24 23 28 28 C 1.38148 * 120.03048 * 0.02562 * 27 25 24 29 29 H 1.08998 * 109.46779 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46877 * 300.00701 * 1 2 3 31 31 H 1.09002 * 109.46986 * 59.99851 * 1 2 3 32 32 H 1.08999 * 109.47152 * 239.99774 * 2 1 3 33 33 H 1.08997 * 109.47014 * 119.99398 * 2 1 3 34 34 H 0.96992 * 120.00675 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47251 * 149.99745 * 12 3 2 36 36 H 1.09007 * 109.47086 * 30.00091 * 12 3 2 37 37 H 1.08999 * 109.46620 * 59.99475 * 13 12 3 38 38 H 1.08998 * 109.46501 * 299.99934 * 13 12 3 39 39 H 1.09000 * 109.47166 * 59.99778 * 14 13 12 40 40 H 1.09000 * 109.46910 * 299.99917 * 14 13 12 41 41 H 0.96997 * 120.00093 * 359.97438 * 15 14 13 42 42 H 1.09004 * 109.47413 * 300.00474 * 20 18 16 43 43 H 1.09001 * 109.47163 * 59.99854 * 20 18 16 44 44 H 1.08998 * 109.47606 * 179.97438 * 20 18 16 45 45 H 1.07999 * 120.01945 * 0.02562 * 23 22 21 46 46 H 1.07998 * 119.98460 * 179.72392 * 24 23 22 47 47 H 1.07996 * 119.98047 * 180.02562 * 27 25 24 48 48 H 1.07995 * 120.01258 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1977 2.0441 -1.1849 5 1 1.4938 1.9066 -1.9924 6 6 3.2841 2.8924 -1.3480 7 7 4.3504 2.7497 -0.5896 8 14 3.2330 4.2368 -2.6439 9 1 1.9322 4.1863 -3.3585 10 1 3.3880 5.5610 -1.9898 11 1 4.3385 4.0315 -3.6140 12 6 2.3148 2.0534 1.2674 13 6 1.0594 2.7678 1.7718 14 6 1.3688 3.4693 3.0958 15 7 0.1665 4.1528 3.5789 16 6 0.2028 4.8427 4.7362 17 8 1.2305 4.8974 5.3777 18 6 -1.0339 5.5464 5.2330 19 1 -1.4039 6.2200 4.4600 20 6 -2.1106 4.5115 5.5656 21 8 -0.7158 6.2970 6.4065 22 6 -1.5056 7.3673 6.6874 23 6 -1.1836 8.2100 7.7411 24 6 -1.9904 9.2938 8.0293 25 6 -3.1136 9.5456 7.2598 26 9 -3.8986 10.6090 7.5393 27 6 -3.4327 8.7087 6.2039 28 6 -2.6309 7.6209 5.9172 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 5.1097 3.3422 -0.7038 35 1 3.1109 2.7821 1.1147 36 1 2.6338 1.3159 2.0039 37 1 0.2633 2.0391 1.9245 38 1 0.7405 3.5053 1.0353 39 1 2.1650 4.1980 2.9435 40 1 1.6875 2.7315 3.8320 41 1 -0.6554 4.1095 3.0656 42 1 -2.3532 3.9389 4.6704 43 1 -1.7406 3.8379 6.3386 44 1 -3.0049 5.0203 5.9254 45 1 -0.3050 8.0165 8.3387 46 1 -1.7424 9.9475 8.8524 47 1 -4.3088 8.9065 5.6043 48 1 -2.8798 6.9686 5.0933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316907530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:46 Heat of formation + Delta-G solvation = -79.653888 kcal Electronic energy + Delta-G solvation = -28513.781276 eV Core-core repulsion = 24291.216139 eV Total energy + Delta-G solvation = -4222.565137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.14974 -40.91848 -39.43753 -37.51087 -36.45848 -34.88181 -32.82901 -31.89916 -31.56156 -30.84842 -29.58730 -28.55607 -25.79759 -24.70558 -23.81382 -23.35083 -22.40682 -21.12952 -20.54007 -19.96267 -18.85251 -17.80452 -17.59800 -16.75803 -16.41450 -16.15123 -15.84047 -15.71390 -15.24005 -15.08255 -14.82277 -14.45936 -14.19042 -14.04738 -13.75958 -13.57572 -13.49170 -13.37331 -13.07389 -12.76735 -12.65481 -12.54293 -12.38195 -12.08229 -11.65061 -11.51394 -11.33574 -11.21437 -11.17908 -11.08178 -10.79730 -10.62566 -10.47030 -10.09076 -9.83458 -9.67316 -9.60306 -9.57590 -8.98178 -8.50514 -8.47781 -6.59440 -5.82631 -3.41992 0.72984 0.81602 2.36066 2.50548 3.16646 3.31268 3.40383 3.41465 3.42761 3.93087 4.20183 4.29763 4.39000 4.43818 4.47945 4.56341 4.70278 4.87892 5.02093 5.17703 5.21241 5.25050 5.35444 5.45829 5.57942 5.63767 5.70478 5.75111 5.76957 5.81713 5.91800 6.03391 6.20209 6.27526 6.30268 6.36681 6.39538 6.52916 6.67794 6.70736 6.88001 6.93091 7.03893 7.13179 7.47375 7.61099 7.79676 8.15098 8.49446 9.16275 9.78234 10.37930 11.17005 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.002016 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.676054 B =13888.273255 C =14554.856285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.262 4.262 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.153 3.847 13 C -0.147 4.147 14 C 0.121 3.879 15 N -0.719 5.719 16 C 0.513 3.487 17 O -0.519 6.519 18 C 0.064 3.936 19 H 0.099 0.901 20 C -0.176 4.176 21 O -0.280 6.280 22 C 0.126 3.874 23 C -0.121 4.121 24 C -0.112 4.112 25 C 0.055 3.945 26 F -0.142 7.142 27 C -0.111 4.111 28 C -0.186 4.186 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.255 0.745 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.399 0.601 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.138 0.862 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.605 8.174 14.822 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.026 3.974 13 C -0.188 4.188 14 C -0.002 4.002 15 N -0.372 5.372 16 C 0.296 3.704 17 O -0.393 6.393 18 C 0.004 3.996 19 H 0.117 0.883 20 C -0.234 4.234 21 O -0.192 6.192 22 C 0.079 3.921 23 C -0.139 4.139 24 C -0.130 4.130 25 C 0.036 3.964 26 F -0.121 7.121 27 C -0.130 4.130 28 C -0.204 4.204 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.233 0.767 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.162 0.838 46 H 0.160 0.840 47 H 0.156 0.844 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.499 8.221 15.384 23.334 hybrid contribution -0.779 0.975 -1.063 1.639 sum -16.278 9.195 14.321 23.550 Atomic orbital electron populations 1.22386 1.00221 0.98911 1.01042 1.20857 0.91594 0.87423 0.98801 1.43735 1.76421 1.08174 1.02083 1.18995 1.04785 1.22558 0.92877 0.92338 1.25215 0.94222 1.01300 0.97919 1.70031 1.03554 1.37506 1.41504 0.86395 0.77670 0.82310 0.81390 1.20090 1.21393 1.21598 1.20748 0.94301 0.96350 0.86050 1.22570 1.02667 0.99780 0.93748 1.21551 0.86075 0.96001 0.96547 1.46063 1.15602 1.52714 1.22808 1.19966 0.88972 0.79801 0.81624 1.90754 1.32172 1.60259 1.56146 1.22298 0.95075 0.94180 0.88015 0.88329 1.22345 0.97809 0.99140 1.04095 1.86254 1.52429 1.38178 1.42356 1.19108 0.90180 0.87765 0.94996 1.20338 1.01545 0.93995 0.98052 1.20980 0.93657 0.98228 1.00177 1.17591 0.92495 0.87733 0.98576 1.91492 1.73348 1.53944 1.93319 1.20942 1.00739 0.94396 0.96886 1.21197 0.96198 1.00507 1.02526 0.94623 0.93812 0.93295 0.93694 0.94963 0.93519 0.89056 0.95565 0.92865 0.91626 0.91283 0.91714 0.76677 0.89921 0.90430 0.90643 0.83836 0.83966 0.84367 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.23 37.16 0.38 -2.45 16 2 C 0.14 2.84 6.43 -4.04 -0.03 2.81 16 3 N -0.58 -13.76 2.42 -173.23 -0.42 -14.18 16 4 C -0.26 -6.87 9.45 -15.06 -0.14 -7.01 16 5 H 0.06 1.54 7.92 -52.49 -0.42 1.13 16 6 C 0.01 0.38 4.93 -17.43 -0.09 0.30 16 7 N -0.88 -24.85 11.58 55.49 0.64 -24.21 16 8 Si 0.89 20.93 29.61 -169.99 -5.03 15.89 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.15 3.32 5.34 -4.04 -0.02 3.30 16 13 C -0.15 -2.54 5.65 -26.73 -0.15 -2.69 16 14 C 0.12 1.90 5.67 -4.04 -0.02 1.88 16 15 N -0.72 -9.03 5.52 -60.29 -0.33 -9.36 16 16 C 0.51 7.06 7.18 -10.98 -0.08 6.98 16 17 O -0.52 -9.60 16.51 -14.30 -0.24 -9.83 16 18 C 0.06 0.64 2.63 -27.88 -0.07 0.57 16 19 H 0.10 0.75 6.31 -51.93 -0.33 0.42 16 20 C -0.18 -1.28 9.13 37.15 0.34 -0.94 16 21 O -0.28 -3.36 9.34 -39.43 -0.37 -3.73 16 22 C 0.13 1.25 6.60 -39.24 -0.26 0.99 16 23 C -0.12 -1.09 9.99 -39.44 -0.39 -1.49 16 24 C -0.11 -0.91 10.02 -39.53 -0.40 -1.30 16 25 C 0.06 0.49 7.30 -39.42 -0.29 0.20 16 26 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 27 C -0.11 -0.87 10.02 -39.53 -0.40 -1.27 16 28 C -0.19 -1.50 8.24 -39.44 -0.33 -1.82 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.71 6.43 -51.93 -0.33 0.37 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 33 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.09 2.30 5.61 -51.93 -0.29 2.01 16 36 H 0.03 0.55 7.87 -51.92 -0.41 0.14 16 37 H 0.05 0.85 6.43 -51.93 -0.33 0.51 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.40 3.79 8.26 -40.82 -0.34 3.45 16 42 H 0.08 0.46 7.93 -51.93 -0.41 0.04 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.45 6.92 -51.93 -0.36 0.09 16 45 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 48 H 0.14 0.84 5.43 -52.49 -0.28 0.55 16 LS Contribution 398.74 15.07 6.01 6.01 Total: -1.00 -31.95 398.74 -8.91 -40.86 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.27 Total: 1.81 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.94 Total: -1.93 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.11 Total: -47.75 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.60 Total: -13.56 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.95 -8.91 -40.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316907530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.789 kcal (2) G-P(sol) polarization free energy of solvation -31.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds