Wall clock time and date at job start Tue Mar 31 2020 21:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 119.99991 * 2 1 4 4 O 1.21281 * 119.99624 * 180.02562 * 3 2 1 5 5 C 1.50691 * 120.00414 * 0.02562 * 3 2 1 6 6 S 1.80997 * 109.47495 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00295 * 180.02562 * 6 5 3 8 8 H 1.08001 * 120.00022 * 359.97438 * 7 6 5 9 9 C 1.38794 * 120.00348 * 179.97438 * 7 6 5 10 10 N 1.31637 * 119.99744 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00564 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47048 * 89.99545 * 11 9 7 13 13 H 1.48497 * 109.47392 * 210.00220 * 11 9 7 14 14 H 1.48505 * 109.46557 * 330.00092 * 11 9 7 15 15 C 1.46499 * 119.99649 * 180.02562 * 2 1 3 16 16 H 1.08995 * 110.64389 * 178.30020 * 15 2 1 17 17 C 1.54597 * 110.72338 * 301.45150 * 15 2 1 18 18 C 1.53990 * 105.14162 * 140.31794 * 17 15 2 19 19 N 1.47903 * 107.06046 * 1.22234 * 18 17 15 20 20 C 1.46900 * 111.00377 * 214.15724 * 19 18 17 21 21 C 1.50700 * 109.47206 * 176.27498 * 20 19 18 22 22 C 1.29443 * 117.96296 * 94.10894 * 21 20 19 23 23 C 1.50066 * 124.07738 * 180.51288 * 22 21 20 24 24 C 1.53029 * 110.03466 * 342.92030 * 23 22 21 25 25 C 1.53083 * 108.59671 * 49.47194 * 24 23 22 26 26 C 1.50065 * 117.95816 * 274.13555 * 21 20 19 27 27 C 1.48534 * 105.81833 * 334.67530 * 19 18 17 28 28 H 1.09004 * 109.46942 * 269.99844 * 1 2 3 29 29 H 1.09000 * 109.46985 * 29.99692 * 1 2 3 30 30 H 1.09002 * 109.47333 * 150.00070 * 1 2 3 31 31 H 1.09007 * 109.47121 * 300.00113 * 5 3 2 32 32 H 1.09004 * 109.47471 * 59.99619 * 5 3 2 33 33 H 0.97005 * 119.99720 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.31080 * 21.39796 * 17 15 2 35 35 H 1.09007 * 110.39476 * 259.27489 * 17 15 2 36 36 H 1.09002 * 109.92012 * 241.86846 * 18 17 15 37 37 H 1.09004 * 110.08652 * 120.67184 * 18 17 15 38 38 H 1.08993 * 109.46547 * 56.27207 * 20 19 18 39 39 H 1.08998 * 109.46999 * 296.27482 * 20 19 18 40 40 H 1.07995 * 117.96079 * 0.49786 * 22 21 20 41 41 H 1.08992 * 109.35962 * 103.05420 * 23 22 21 42 42 H 1.09000 * 109.36188 * 222.78458 * 23 22 21 43 43 H 1.08994 * 109.64302 * 169.05129 * 24 23 22 44 44 H 1.09001 * 109.64456 * 289.68682 * 24 23 22 45 45 H 1.08995 * 109.68597 * 172.83353 * 25 24 23 46 46 H 1.09000 * 109.80813 * 52.28426 * 25 24 23 47 47 H 1.08995 * 109.35987 * 283.04781 * 26 21 20 48 48 H 1.08998 * 109.35883 * 42.64033 * 26 21 20 49 49 H 1.09001 * 110.67179 * 157.64116 * 27 19 18 50 50 H 1.09001 * 110.66075 * 280.76764 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 0.0006 6 16 2.5617 3.8479 -0.0003 7 6 1.4417 5.2081 0.0013 8 1 0.3764 5.0305 0.0020 9 6 1.9284 6.5079 0.0017 10 7 3.2269 6.7245 0.0003 11 14 0.7411 7.9501 0.0042 12 1 0.4280 8.3311 1.4049 13 1 1.3616 9.1034 -0.6958 14 1 -0.5104 7.5619 -0.6947 15 6 2.1975 -1.2688 -0.0006 16 1 3.2725 -1.0918 -0.0307 17 6 1.8175 -2.1203 1.2326 18 6 1.7353 -3.5673 0.7123 19 7 2.0808 -3.5318 -0.7254 20 6 1.3169 -4.5376 -1.4755 21 6 1.6265 -4.4106 -2.9449 22 6 2.5596 -5.1616 -3.4357 23 6 2.9867 -5.1402 -4.8741 24 6 1.9182 -4.4540 -5.7281 25 6 1.5468 -3.1232 -5.0689 26 6 0.8342 -3.4209 -3.7478 27 6 1.7509 -2.1592 -1.1873 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7591 2.5298 0.8908 33 1 3.5670 7.6330 0.0009 34 1 0.8518 -1.8047 1.6273 35 1 2.5852 -2.0380 2.0021 36 1 0.7235 -3.9515 0.8416 37 1 2.4434 -4.1989 1.2489 38 1 0.2507 -4.3789 -1.3137 39 1 1.5923 -5.5343 -1.1310 40 1 3.0621 -5.8460 -2.7684 41 1 3.9260 -4.5948 -4.9640 42 1 3.1275 -6.1626 -5.2246 43 1 2.3118 -4.2673 -6.7272 44 1 1.0355 -5.0903 -5.7917 45 1 0.8823 -2.5612 -5.7252 46 1 2.4486 -2.5422 -4.8760 47 1 -0.1538 -3.8319 -3.9550 48 1 0.7271 -2.4973 -3.1790 49 1 2.3130 -1.9107 -2.0875 50 1 0.6796 -2.0591 -1.3615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318387196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:55 Heat of formation + Delta-G solvation = -19.470330 kcal Electronic energy + Delta-G solvation = -27308.753916 eV Core-core repulsion = 23655.011710 eV Total energy + Delta-G solvation = -3653.742206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33137 -39.16804 -37.91326 -35.20871 -33.05452 -32.42846 -31.12618 -30.45853 -29.29754 -28.19404 -26.87601 -25.54516 -25.21004 -23.44023 -22.03864 -21.22570 -21.00972 -19.06555 -17.85042 -17.69048 -16.99955 -16.52638 -16.07842 -15.58237 -15.29179 -14.88030 -14.80316 -14.52995 -14.39906 -14.03630 -13.95626 -13.61699 -13.36371 -13.11363 -13.04592 -12.96105 -12.61207 -12.50844 -12.42360 -12.29829 -12.10763 -12.00759 -11.69111 -11.64627 -11.36378 -11.06694 -11.04700 -11.02433 -10.78154 -10.75377 -10.60960 -10.36837 -9.80870 -9.36516 -9.12606 -9.06690 -8.62803 -8.51902 -8.22460 -6.50118 -6.21601 -3.92234 1.96775 2.87147 3.03087 3.22000 3.24696 3.29718 3.56178 3.94411 4.20126 4.30287 4.41889 4.44965 4.61140 4.65244 4.80590 4.89189 4.91112 4.98155 5.00725 5.09330 5.12753 5.13781 5.17831 5.21492 5.29204 5.32861 5.34353 5.41968 5.44949 5.56669 5.57572 5.61445 5.65226 5.69806 5.72473 5.74729 5.80103 5.88482 5.91578 5.96458 6.06731 6.07367 6.12403 6.40008 6.48888 6.73198 6.75352 6.80309 7.52036 7.59450 8.35020 8.55001 9.23580 10.85803 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.002337 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.239588 B =11977.099305 C =12883.702749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.617 5.617 3 C 0.535 3.465 4 O -0.513 6.513 5 C -0.149 4.149 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.139 3.861 16 H 0.115 0.885 17 C -0.143 4.143 18 C 0.038 3.962 19 N -0.508 5.508 20 C 0.081 3.919 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.091 4.091 27 C 0.028 3.972 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.268 0.732 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 -26.249 -5.459 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C 0.323 3.677 4 O -0.387 6.387 5 C -0.300 4.300 6 S 0.165 5.835 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.034 3.966 16 H 0.133 0.867 17 C -0.182 4.182 18 C -0.090 4.090 19 N -0.232 5.232 20 C -0.046 4.046 21 C -0.123 4.123 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.128 4.128 27 C -0.101 4.101 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.107 0.893 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.360 -26.231 -5.527 27.338 hybrid contribution -3.183 0.993 0.259 3.344 sum -8.543 -25.239 -5.268 27.161 Atomic orbital electron populations 1.21752 0.80083 1.03043 1.01742 1.47796 1.06547 1.05296 1.75609 1.20361 0.87960 0.84497 0.74903 1.90697 1.13727 1.86684 1.47609 1.23555 1.04544 0.97191 1.04696 1.85418 1.08026 0.93316 1.96695 1.22850 0.94284 0.92210 1.58944 0.90973 1.24994 0.95670 0.98375 0.94561 1.70024 1.11729 1.21657 1.46841 0.86172 0.80261 0.80742 0.78345 1.20274 1.20741 1.19712 1.21883 0.98988 0.82402 0.93305 0.86676 1.22774 1.02767 0.93986 0.98629 1.22851 0.99750 0.97175 0.89228 1.64840 1.52981 1.03098 1.02262 1.21377 0.95440 0.96462 0.91329 1.20634 0.98803 0.98556 0.94327 1.21904 0.97094 0.99670 0.96635 1.20457 0.98937 1.00778 0.92608 1.21541 0.98862 0.96755 0.98554 1.21532 1.00857 0.97286 0.96097 1.20602 0.98124 0.98307 0.95780 1.23682 0.99383 0.88228 0.98784 0.92722 0.90410 0.91565 0.89254 0.89280 0.92182 0.90858 0.90297 0.93729 0.90048 0.94344 0.90249 0.87850 0.90715 0.91272 0.91818 0.91958 0.91688 0.91472 0.91354 0.90570 0.89301 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 9.15 59.85 0.55 1.35 16 2 N -0.62 -8.72 2.88 -171.81 -0.50 -9.21 16 3 C 0.53 10.21 7.69 -10.99 -0.08 10.13 16 4 O -0.51 -11.83 15.23 5.56 0.08 -11.75 16 5 C -0.15 -3.03 4.71 36.00 0.17 -2.86 16 6 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 7 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 10 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 11 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.14 1.78 3.47 -66.07 -0.23 1.55 16 16 H 0.12 1.81 6.99 -51.93 -0.36 1.45 16 17 C -0.14 -1.47 6.55 -25.38 -0.17 -1.63 16 18 C 0.04 0.34 6.70 -2.76 -0.02 0.32 16 19 N -0.51 -5.05 5.34 -231.89 -1.24 -6.29 16 20 C 0.08 0.69 4.88 -4.98 -0.02 0.66 16 21 C -0.12 -1.07 4.82 -100.94 -0.49 -1.56 16 22 C -0.13 -1.14 9.37 -35.90 -0.34 -1.47 16 23 C -0.09 -0.68 6.13 -28.17 -0.17 -0.85 16 24 C -0.12 -0.86 5.98 -26.67 -0.16 -1.02 16 25 C -0.12 -0.98 6.00 -26.68 -0.16 -1.14 16 26 C -0.09 -0.76 5.46 -28.18 -0.15 -0.91 16 27 C 0.03 0.30 4.09 -1.90 -0.01 0.29 16 28 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 29 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 30 H 0.07 0.55 6.06 -51.93 -0.31 0.24 16 31 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 32 H 0.09 1.68 8.11 -51.91 -0.42 1.26 16 33 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.07 0.70 6.99 -51.93 -0.36 0.34 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.34 7.67 -51.93 -0.40 -0.05 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.31 7.95 -51.93 -0.41 -0.10 16 39 H 0.08 0.62 7.81 -51.93 -0.41 0.21 16 40 H 0.10 0.85 7.75 -52.49 -0.41 0.44 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.68 4.95 -51.93 -0.26 0.42 16 49 H 0.09 1.09 7.32 -51.93 -0.38 0.71 16 50 H 0.05 0.51 4.94 -51.93 -0.26 0.26 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -33.35 395.76 -11.73 -45.08 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.46 Total: -0.74 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.08 Total: -10.06 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -1.00 Total: -40.96 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.75 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.35 -11.73 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318387196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.605 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds