Wall clock time and date at job start Tue Mar 31 2020 21:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 119.99991 * 2 1 4 4 O 1.21281 * 119.99624 * 180.02562 * 3 2 1 5 5 C 1.50691 * 120.00414 * 0.02562 * 3 2 1 6 6 S 1.80997 * 109.47495 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00295 * 180.02562 * 6 5 3 8 8 H 1.08001 * 120.00022 * 359.97438 * 7 6 5 9 9 C 1.38794 * 120.00348 * 179.97438 * 7 6 5 10 10 N 1.31637 * 119.99744 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00564 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47048 * 89.99545 * 11 9 7 13 13 H 1.48497 * 109.47392 * 210.00220 * 11 9 7 14 14 H 1.48505 * 109.46557 * 330.00092 * 11 9 7 15 15 C 1.46499 * 119.99649 * 180.02562 * 2 1 3 16 16 H 1.08995 * 110.64389 * 178.30020 * 15 2 1 17 17 C 1.54597 * 110.72338 * 301.45150 * 15 2 1 18 18 C 1.53990 * 105.14162 * 140.31794 * 17 15 2 19 19 N 1.47903 * 107.06046 * 1.22234 * 18 17 15 20 20 C 1.46900 * 111.00377 * 214.15724 * 19 18 17 21 21 C 1.50700 * 109.47206 * 176.27498 * 20 19 18 22 22 C 1.29443 * 117.96296 * 94.10894 * 21 20 19 23 23 C 1.50066 * 124.07738 * 180.51288 * 22 21 20 24 24 C 1.53029 * 110.03466 * 342.92030 * 23 22 21 25 25 C 1.53083 * 108.59671 * 49.47194 * 24 23 22 26 26 C 1.50065 * 117.95816 * 274.13555 * 21 20 19 27 27 C 1.48534 * 105.81833 * 334.67530 * 19 18 17 28 28 H 1.09004 * 109.46942 * 269.99844 * 1 2 3 29 29 H 1.09000 * 109.46985 * 29.99692 * 1 2 3 30 30 H 1.09002 * 109.47333 * 150.00070 * 1 2 3 31 31 H 1.09007 * 109.47121 * 300.00113 * 5 3 2 32 32 H 1.09004 * 109.47471 * 59.99619 * 5 3 2 33 33 H 0.97005 * 119.99720 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.31080 * 21.39796 * 17 15 2 35 35 H 1.09007 * 110.39476 * 259.27489 * 17 15 2 36 36 H 1.09002 * 109.92012 * 241.86846 * 18 17 15 37 37 H 1.09004 * 110.08652 * 120.67184 * 18 17 15 38 38 H 1.08993 * 109.46547 * 56.27207 * 20 19 18 39 39 H 1.08998 * 109.46999 * 296.27482 * 20 19 18 40 40 H 1.07995 * 117.96079 * 0.49786 * 22 21 20 41 41 H 1.08992 * 109.35962 * 103.05420 * 23 22 21 42 42 H 1.09000 * 109.36188 * 222.78458 * 23 22 21 43 43 H 1.08994 * 109.64302 * 169.05129 * 24 23 22 44 44 H 1.09001 * 109.64456 * 289.68682 * 24 23 22 45 45 H 1.08995 * 109.68597 * 172.83353 * 25 24 23 46 46 H 1.09000 * 109.80813 * 52.28426 * 25 24 23 47 47 H 1.08995 * 109.35987 * 283.04781 * 26 21 20 48 48 H 1.08998 * 109.35883 * 42.64033 * 26 21 20 49 49 H 1.09001 * 110.67179 * 157.64116 * 27 19 18 50 50 H 1.09001 * 110.66075 * 280.76764 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 0.0006 6 16 2.5617 3.8479 -0.0003 7 6 1.4417 5.2081 0.0013 8 1 0.3764 5.0305 0.0020 9 6 1.9284 6.5079 0.0017 10 7 3.2269 6.7245 0.0003 11 14 0.7411 7.9501 0.0042 12 1 0.4280 8.3311 1.4049 13 1 1.3616 9.1034 -0.6958 14 1 -0.5104 7.5619 -0.6947 15 6 2.1975 -1.2688 -0.0006 16 1 3.2725 -1.0918 -0.0307 17 6 1.8175 -2.1203 1.2326 18 6 1.7353 -3.5673 0.7123 19 7 2.0808 -3.5318 -0.7254 20 6 1.3169 -4.5376 -1.4755 21 6 1.6265 -4.4106 -2.9449 22 6 2.5596 -5.1616 -3.4357 23 6 2.9867 -5.1402 -4.8741 24 6 1.9182 -4.4540 -5.7281 25 6 1.5468 -3.1232 -5.0689 26 6 0.8342 -3.4209 -3.7478 27 6 1.7509 -2.1592 -1.1873 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7585 2.5302 -0.8892 32 1 0.7591 2.5298 0.8908 33 1 3.5670 7.6330 0.0009 34 1 0.8518 -1.8047 1.6273 35 1 2.5852 -2.0380 2.0021 36 1 0.7235 -3.9515 0.8416 37 1 2.4434 -4.1989 1.2489 38 1 0.2507 -4.3789 -1.3137 39 1 1.5923 -5.5343 -1.1310 40 1 3.0621 -5.8460 -2.7684 41 1 3.9260 -4.5948 -4.9640 42 1 3.1275 -6.1626 -5.2246 43 1 2.3118 -4.2673 -6.7272 44 1 1.0355 -5.0903 -5.7917 45 1 0.8823 -2.5612 -5.7252 46 1 2.4486 -2.5422 -4.8760 47 1 -0.1538 -3.8319 -3.9550 48 1 0.7271 -2.4973 -3.1790 49 1 2.3130 -1.9107 -2.0875 50 1 0.6796 -2.0591 -1.3615 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318387196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:54 Heat of formation + Delta-G solvation = -40.033614 kcal Electronic energy + Delta-G solvation = -27309.645606 eV Core-core repulsion = 23655.011710 eV Total energy + Delta-G solvation = -3654.633897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38513 -40.16253 -38.81699 -36.37980 -34.58545 -33.86143 -31.77014 -31.56557 -30.24813 -29.31575 -27.86802 -27.65385 -26.03822 -24.07804 -22.83506 -22.21141 -21.76967 -20.37533 -19.59398 -18.52230 -18.27525 -17.53631 -16.92957 -16.88002 -16.73242 -16.43717 -16.08740 -15.46337 -15.35589 -15.00535 -14.72511 -14.59206 -14.54195 -14.38012 -14.09185 -13.92296 -13.79993 -13.54175 -13.22662 -13.17955 -13.13778 -13.09284 -12.89744 -12.77433 -12.64763 -12.54466 -12.43031 -12.19855 -11.73718 -11.70002 -11.60485 -11.26098 -11.14324 -10.98925 -10.91229 -10.26927 -9.79140 -9.70580 -9.32457 -8.68092 -8.34608 -6.13285 1.23603 1.31707 1.42612 1.45366 1.53765 1.56057 2.03391 2.27186 2.99520 3.15421 3.25593 3.51719 3.59865 3.75888 3.82222 3.84117 4.00941 4.04703 4.10705 4.20987 4.26652 4.29210 4.32997 4.38850 4.45277 4.48315 4.52615 4.57013 4.65399 4.69812 4.73061 4.77209 4.80007 4.87970 4.95247 4.98720 5.03648 5.05138 5.09171 5.13701 5.18170 5.31694 5.41560 5.44814 5.49168 5.76938 5.86393 6.04141 6.15736 6.19542 6.24013 7.06438 7.11576 8.74699 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.002337 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.239588 B =11977.099305 C =12883.702749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.601 5.601 3 C 0.532 3.468 4 O -0.566 6.566 5 C -0.121 4.121 6 S -0.155 6.155 7 C -0.544 4.544 8 H 0.084 0.916 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.257 1.257 15 C 0.132 3.868 16 H 0.077 0.923 17 C -0.135 4.135 18 C 0.044 3.956 19 N -0.522 5.522 20 C 0.084 3.916 21 C -0.132 4.132 22 C -0.141 4.141 23 C -0.093 4.093 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.090 4.090 27 C 0.043 3.957 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.271 0.729 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 -27.717 -5.432 30.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.320 3.680 4 O -0.444 6.444 5 C -0.272 4.272 6 S 0.072 5.928 7 C -0.691 4.691 8 H 0.102 0.898 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.821 3.179 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.181 1.181 15 C 0.027 3.973 16 H 0.095 0.905 17 C -0.174 4.174 18 C -0.084 4.084 19 N -0.247 5.247 20 C -0.043 4.043 21 C -0.132 4.132 22 C -0.160 4.160 23 C -0.130 4.130 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.127 4.127 27 C -0.086 4.086 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.087 0.913 49 H 0.086 0.914 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.853 -27.756 -5.499 29.648 hybrid contribution -2.112 1.288 0.240 2.485 sum -10.965 -26.469 -5.259 29.129 Atomic orbital electron populations 1.22095 0.77153 1.04658 1.03539 1.47750 1.08237 1.04168 1.73322 1.20199 0.87286 0.85499 0.75054 1.90681 1.15833 1.87413 1.50514 1.23362 1.02641 0.94733 1.06472 1.85639 1.12759 0.97395 1.97031 1.23180 0.94599 0.92531 1.58820 0.89814 1.26153 0.97609 1.01744 0.93752 1.70197 1.14162 1.22464 1.48038 0.84941 0.77887 0.76262 0.78810 1.19284 1.20363 1.18056 1.21936 0.97003 0.82269 0.96084 0.90514 1.22726 1.03140 0.94450 0.97066 1.22849 1.01213 0.96021 0.88310 1.64813 1.54015 1.02710 1.03122 1.21410 0.95862 0.96270 0.90798 1.20765 0.99074 0.98657 0.94742 1.22062 0.97000 0.99742 0.97195 1.20488 0.98649 1.01503 0.92311 1.21530 0.99037 0.96186 0.98672 1.21540 1.00202 0.97735 0.96536 1.20591 0.98616 0.97935 0.95529 1.23466 0.99843 0.88419 0.96840 0.90752 0.90148 0.88722 0.87268 0.87336 0.92012 0.89344 0.91138 0.91523 0.89518 0.93154 0.89364 0.87721 0.91476 0.89960 0.91212 0.91287 0.91124 0.93336 0.90214 0.91275 0.91352 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 9.15 127.77 1.17 2.35 16 2 N -0.60 -16.35 2.88 -815.87 -2.35 -18.70 16 3 C 0.53 20.54 7.69 87.66 0.67 21.22 16 4 O -0.57 -27.47 15.23 -3.03 -0.05 -27.51 16 5 C -0.12 -4.87 4.71 71.23 0.34 -4.54 16 6 S -0.16 -8.75 20.57 -56.49 -1.16 -9.92 16 7 C -0.54 -31.07 9.50 67.95 0.65 -30.42 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 C 0.01 0.69 5.49 84.86 0.47 1.15 16 10 N -0.91 -56.43 13.22 21.65 0.29 -56.14 16 11 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 13 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 15 C 0.13 3.32 3.47 46.20 0.16 3.48 16 16 H 0.08 2.57 6.99 -2.39 -0.02 2.55 16 17 C -0.13 -2.53 6.55 31.47 0.21 -2.32 16 18 C 0.04 0.66 6.70 86.44 0.58 1.23 16 19 N -0.52 -9.46 5.34 -887.57 -4.74 -14.20 16 20 C 0.08 1.20 4.88 85.56 0.42 1.62 16 21 C -0.13 -2.09 4.82 -15.10 -0.07 -2.16 16 22 C -0.14 -2.23 9.37 27.04 0.25 -1.98 16 23 C -0.09 -1.30 6.13 29.66 0.18 -1.12 16 24 C -0.12 -1.55 5.98 30.63 0.18 -1.37 16 25 C -0.12 -1.92 6.00 30.63 0.18 -1.74 16 26 C -0.09 -1.36 5.46 29.66 0.16 -1.20 16 27 C 0.04 0.88 4.09 86.65 0.35 1.23 16 28 H 0.07 1.10 7.90 -2.39 -0.02 1.08 16 29 H 0.08 1.42 6.44 -2.39 -0.02 1.41 16 30 H 0.09 1.17 6.06 -2.39 -0.01 1.16 16 31 H 0.11 3.95 7.40 -2.39 -0.02 3.93 16 32 H 0.11 3.93 8.11 -2.39 -0.02 3.91 16 33 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 34 H 0.09 1.40 6.99 -2.39 -0.02 1.39 16 35 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.07 0.75 7.67 -2.39 -0.02 0.73 16 37 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.05 0.62 7.95 -2.39 -0.02 0.60 16 39 H 0.09 1.13 7.81 -2.39 -0.02 1.11 16 40 H 0.10 1.59 7.75 -2.91 -0.02 1.57 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 47 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.07 1.13 4.95 -2.39 -0.01 1.12 16 49 H 0.07 1.69 7.32 -2.39 -0.02 1.68 16 50 H 0.07 1.17 4.94 -2.39 -0.01 1.16 16 Total: -1.00 -76.00 395.76 0.83 -75.18 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.91 Total: 20.29 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 5.90 Total: -14.56 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -6.81 Total: -89.04 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.92 kcal Total: -76.00 0.83 -75.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318387196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.142 kcal (2) G-P(sol) polarization free energy of solvation -76.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds