Wall clock time and date at job start Tue Mar 31 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00369 * 2 1 4 4 O 1.21284 * 120.00141 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00008 * 359.97438 * 3 2 1 6 6 S 1.80997 * 109.47108 * 179.97438 * 5 3 2 7 7 C 1.76207 * 99.99929 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99803 * 0.02562 * 7 6 5 9 9 C 1.38793 * 119.99972 * 179.97438 * 7 6 5 10 10 N 1.31629 * 120.00046 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00026 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47203 * 90.00033 * 11 9 7 13 13 H 1.48504 * 109.46910 * 209.99747 * 11 9 7 14 14 H 1.48499 * 109.46979 * 329.99484 * 11 9 7 15 15 C 1.46509 * 119.99725 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.87008 * 182.39269 * 15 2 1 17 17 C 1.55135 * 110.98905 * 58.54712 * 15 2 1 18 18 C 1.54321 * 103.01938 * 206.21637 * 17 15 2 19 19 N 1.47441 * 107.22975 * 22.28544 * 18 17 15 20 20 C 1.46898 * 111.00152 * 123.26020 * 19 18 17 21 21 C 1.50698 * 109.47235 * 75.81113 * 20 19 18 22 22 C 1.29436 * 117.96523 * 264.08240 * 21 20 19 23 23 C 1.50071 * 124.07930 * 180.75183 * 22 21 20 24 24 C 1.53027 * 110.14603 * 342.86778 * 23 22 21 25 25 C 1.53391 * 108.43797 * 49.43608 * 24 23 22 26 26 C 1.50071 * 117.95799 * 84.34807 * 21 20 19 27 27 C 1.47848 * 108.57152 * 0.98817 * 19 18 17 28 28 H 1.09002 * 109.47255 * 270.00256 * 1 2 3 29 29 H 1.09002 * 109.46789 * 29.99996 * 1 2 3 30 30 H 1.08996 * 109.47573 * 150.00233 * 1 2 3 31 31 H 1.09003 * 109.47228 * 300.00404 * 5 3 2 32 32 H 1.09006 * 109.46697 * 60.00062 * 5 3 2 33 33 H 0.97006 * 120.00356 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.70546 * 87.83355 * 17 15 2 35 35 H 1.09003 * 110.70691 * 324.59856 * 17 15 2 36 36 H 1.08996 * 109.88655 * 262.88029 * 18 17 15 37 37 H 1.08997 * 110.02440 * 141.76670 * 18 17 15 38 38 H 1.09001 * 109.47113 * 315.81284 * 20 19 18 39 39 H 1.09004 * 109.47381 * 195.81203 * 20 19 18 40 40 H 1.08003 * 117.96206 * 0.72376 * 22 21 20 41 41 H 1.08995 * 109.36029 * 222.66438 * 23 22 21 42 42 H 1.09002 * 109.35815 * 103.07426 * 23 22 21 43 43 H 1.09000 * 109.64163 * 289.75215 * 24 23 22 44 44 H 1.08997 * 109.64692 * 169.12098 * 24 23 22 45 45 H 1.08994 * 109.64340 * 172.88401 * 25 24 23 46 46 H 1.09002 * 109.82089 * 52.35183 * 25 24 23 47 47 H 1.09001 * 109.35539 * 282.78924 * 26 21 20 48 48 H 1.08995 * 109.36185 * 42.37976 * 26 21 20 49 49 H 1.08992 * 110.37190 * 94.73639 * 27 19 18 50 50 H 1.08997 * 110.37599 * 217.07875 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5617 3.8479 0.0003 7 6 1.4417 5.2082 -0.0013 8 1 0.3764 5.0305 -0.0020 9 6 1.9285 6.5080 -0.0006 10 7 1.0918 7.5241 -0.0013 11 14 3.7711 6.8153 0.0014 12 1 4.2608 6.8969 -1.3981 13 1 4.0591 8.0926 0.7019 14 1 4.4580 5.7006 0.7020 15 6 2.1974 -1.2688 0.0006 16 1 3.2728 -1.0964 0.0430 17 6 1.8207 -2.1285 -1.2346 18 6 2.0935 -3.5687 -0.7522 19 7 2.0465 -3.5519 0.7214 20 6 1.0523 -4.5076 1.2274 21 6 1.5988 -5.9075 1.1156 22 6 1.2751 -6.6041 0.0738 23 6 1.7271 -8.0145 -0.1684 24 6 2.9222 -8.3462 0.7279 25 6 2.5793 -7.9354 2.1654 26 6 2.4796 -6.4094 2.2221 27 6 1.7346 -2.1771 1.1669 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7591 2.5299 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 1.4320 8.4326 -0.0012 34 1 2.4556 -1.8802 -2.0851 35 1 0.7683 -1.9996 -1.4874 36 1 3.0788 -3.8919 -1.0881 37 1 1.3301 -4.2431 -1.1399 38 1 0.1381 -4.4264 0.6392 39 1 0.8333 -4.2854 2.2718 40 1 0.6398 -6.1417 -0.6672 41 1 2.0169 -8.1267 -1.2131 42 1 0.9084 -8.6993 0.0529 43 1 3.7990 -7.7946 0.3885 44 1 3.1222 -9.4170 0.6906 45 1 3.3637 -8.2766 2.8410 46 1 1.6263 -8.3759 2.4584 47 1 3.4750 -5.9781 2.1154 48 1 2.0595 -6.1102 3.1823 49 1 0.6631 -2.0658 1.3324 50 1 2.2866 -1.9383 2.0759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318387222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:59 Heat of formation + Delta-G solvation = -22.796793 kcal Electronic energy + Delta-G solvation = -26794.828611 eV Core-core repulsion = 23140.942159 eV Total energy + Delta-G solvation = -3653.886452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35245 -39.25915 -38.06420 -35.31800 -33.05545 -32.44736 -31.13098 -30.49732 -29.68651 -28.12374 -26.83830 -25.65027 -25.37364 -23.59400 -22.02444 -21.49002 -20.95367 -19.20736 -17.93831 -17.74242 -17.10223 -16.46429 -15.98824 -15.70265 -15.49359 -15.18507 -14.95694 -14.58714 -14.22836 -14.03878 -13.83020 -13.70239 -13.65256 -13.31599 -13.17207 -12.82088 -12.80500 -12.74357 -12.51574 -12.37172 -12.21722 -12.08168 -11.83243 -11.64427 -11.46845 -11.26479 -11.13958 -11.01343 -10.89604 -10.73739 -10.59423 -10.46534 -9.86548 -9.52238 -9.16382 -9.01133 -8.68177 -8.56418 -8.50149 -6.93089 -6.29772 -4.01707 1.87486 2.65185 2.88104 3.12821 3.32814 3.50348 3.56188 3.87132 4.26018 4.31526 4.32501 4.36500 4.53293 4.57288 4.63867 4.72938 4.84413 4.92001 4.94511 4.99529 5.02655 5.08108 5.09319 5.15797 5.19838 5.24863 5.25179 5.28305 5.32078 5.40937 5.50709 5.54029 5.57562 5.65842 5.66685 5.69468 5.70903 5.75802 5.83792 5.89513 5.98205 5.99470 6.00373 6.30028 6.45293 6.60267 6.73011 6.79141 7.39164 7.93132 8.39371 8.40415 9.16455 10.79355 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035213 B = 0.001862 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.960726 B =15036.342258 C =15235.647086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.614 5.614 3 C 0.534 3.466 4 O -0.516 6.516 5 C -0.120 4.120 6 S -0.143 6.143 7 C -0.521 4.521 8 H 0.088 0.912 9 C 0.096 3.904 10 N -0.880 5.880 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.136 3.864 16 H 0.117 0.883 17 C -0.155 4.155 18 C 0.046 3.954 19 N -0.520 5.520 20 C 0.081 3.919 21 C -0.102 4.102 22 C -0.157 4.157 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.078 4.078 27 C 0.034 3.966 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.271 0.729 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.052 0.948 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.624 -32.236 1.205 32.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C 0.322 3.678 4 O -0.390 6.390 5 C -0.271 4.271 6 S 0.084 5.916 7 C -0.669 4.669 8 H 0.106 0.894 9 C -0.113 4.113 10 N -0.517 5.517 11 Si 0.681 3.319 12 H -0.192 1.192 13 H -0.199 1.199 14 H -0.159 1.159 15 C 0.031 3.969 16 H 0.134 0.866 17 C -0.195 4.195 18 C -0.082 4.082 19 N -0.244 5.244 20 C -0.047 4.047 21 C -0.102 4.102 22 C -0.176 4.176 23 C -0.124 4.124 24 C -0.158 4.158 25 C -0.158 4.158 26 C -0.115 4.115 27 C -0.095 4.095 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.391 -32.156 1.420 32.190 hybrid contribution -1.828 0.716 -0.425 2.009 sum -2.219 -31.440 0.995 31.534 Atomic orbital electron populations 1.21783 0.79759 1.03245 1.01932 1.47704 1.06710 1.05163 1.75337 1.20339 0.87941 0.84562 0.74987 1.90694 1.13700 1.86731 1.47859 1.23313 1.03085 0.95081 1.05606 1.84807 1.11916 0.97497 1.97411 1.22305 0.94853 0.90900 1.58829 0.89410 1.24708 0.98550 0.94864 0.93156 1.69938 1.34799 0.98877 1.48046 0.86736 0.85347 0.79840 0.79946 1.19206 1.19926 1.15904 1.22092 0.98919 0.82410 0.93465 0.86555 1.23169 1.02279 0.95014 0.98996 1.22815 1.02156 0.95763 0.87423 1.63554 1.46892 1.04873 1.09074 1.21440 0.92215 0.90320 1.00703 1.20688 0.98576 0.94555 0.96427 1.21908 1.01880 0.96399 0.97442 1.20395 0.97873 0.94261 0.99864 1.21601 0.98177 1.00777 0.95259 1.21611 1.01562 0.95813 0.96796 1.20333 0.99622 0.94929 0.96613 1.23356 0.99837 0.87355 0.98949 0.92515 0.90282 0.91414 0.88526 0.88470 0.91938 0.90098 0.90991 0.90236 0.92435 0.94080 0.90382 0.88386 0.91274 0.91211 0.91617 0.91944 0.91770 0.91989 0.90277 0.91341 0.92998 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 8.92 59.84 0.53 1.29 16 2 N -0.61 -8.21 2.91 -171.49 -0.50 -8.71 16 3 C 0.53 9.64 7.69 -10.99 -0.08 9.56 16 4 O -0.52 -11.21 15.24 5.55 0.08 -11.12 16 5 C -0.12 -2.34 4.71 36.01 0.17 -2.17 16 6 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 7 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 10 N -0.88 -26.49 13.97 55.49 0.78 -25.72 16 11 Si 0.86 21.81 27.74 -169.99 -4.72 17.10 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 15 C 0.14 1.63 3.45 -65.79 -0.23 1.40 16 16 H 0.12 1.70 7.01 -51.93 -0.36 1.34 16 17 C -0.16 -1.50 6.50 -24.91 -0.16 -1.66 16 18 C 0.05 0.41 6.40 -2.84 -0.02 0.39 16 19 N -0.52 -4.86 5.10 -232.70 -1.19 -6.05 16 20 C 0.08 0.64 4.68 -4.98 -0.02 0.62 16 21 C -0.10 -0.78 5.15 -100.94 -0.52 -1.30 16 22 C -0.16 -1.13 8.75 -35.90 -0.31 -1.44 16 23 C -0.09 -0.53 6.12 -28.17 -0.17 -0.70 16 24 C -0.12 -0.72 6.01 -26.51 -0.16 -0.88 16 25 C -0.12 -0.73 6.01 -26.51 -0.16 -0.89 16 26 C -0.08 -0.56 5.81 -28.17 -0.16 -0.72 16 27 C 0.03 0.34 6.20 -2.30 -0.01 0.33 16 28 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 30 H 0.07 0.54 6.31 -51.93 -0.33 0.21 16 31 H 0.10 1.74 7.40 -51.92 -0.38 1.36 16 32 H 0.10 1.76 8.11 -51.91 -0.42 1.34 16 33 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.64 6.30 -51.93 -0.33 0.31 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.45 5.96 -51.93 -0.31 0.14 16 38 H 0.04 0.31 7.42 -51.93 -0.39 -0.07 16 39 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 40 H 0.10 0.68 6.78 -52.48 -0.36 0.32 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.47 8.11 -51.93 -0.42 0.04 16 49 H 0.05 0.48 6.72 -51.93 -0.35 0.13 16 50 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -32.80 396.73 -11.27 -44.07 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.62 Total: -1.77 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.10 Total: -8.16 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.91 Total: -40.48 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.80 -11.27 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318387222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.273 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds