Wall clock time and date at job start Tue Mar 31 2020 21:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00369 * 2 1 4 4 O 1.21284 * 120.00141 * 180.02562 * 3 2 1 5 5 C 1.50702 * 120.00008 * 359.97438 * 3 2 1 6 6 S 1.80997 * 109.47108 * 179.97438 * 5 3 2 7 7 C 1.76207 * 99.99929 * 179.97438 * 6 5 3 8 8 H 1.08000 * 119.99803 * 0.02562 * 7 6 5 9 9 C 1.38793 * 119.99972 * 179.97438 * 7 6 5 10 10 N 1.31629 * 120.00046 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00026 * 0.02562 * 9 7 6 12 12 H 1.48494 * 109.47203 * 90.00033 * 11 9 7 13 13 H 1.48504 * 109.46910 * 209.99747 * 11 9 7 14 14 H 1.48499 * 109.46979 * 329.99484 * 11 9 7 15 15 C 1.46509 * 119.99725 * 179.97438 * 2 1 3 16 16 H 1.08998 * 110.87008 * 182.39269 * 15 2 1 17 17 C 1.55135 * 110.98905 * 58.54712 * 15 2 1 18 18 C 1.54321 * 103.01938 * 206.21637 * 17 15 2 19 19 N 1.47441 * 107.22975 * 22.28544 * 18 17 15 20 20 C 1.46898 * 111.00152 * 123.26020 * 19 18 17 21 21 C 1.50698 * 109.47235 * 75.81113 * 20 19 18 22 22 C 1.29436 * 117.96523 * 264.08240 * 21 20 19 23 23 C 1.50071 * 124.07930 * 180.75183 * 22 21 20 24 24 C 1.53027 * 110.14603 * 342.86778 * 23 22 21 25 25 C 1.53391 * 108.43797 * 49.43608 * 24 23 22 26 26 C 1.50071 * 117.95799 * 84.34807 * 21 20 19 27 27 C 1.47848 * 108.57152 * 0.98817 * 19 18 17 28 28 H 1.09002 * 109.47255 * 270.00256 * 1 2 3 29 29 H 1.09002 * 109.46789 * 29.99996 * 1 2 3 30 30 H 1.08996 * 109.47573 * 150.00233 * 1 2 3 31 31 H 1.09003 * 109.47228 * 300.00404 * 5 3 2 32 32 H 1.09006 * 109.46697 * 60.00062 * 5 3 2 33 33 H 0.97006 * 120.00356 * 180.02562 * 10 9 7 34 34 H 1.08998 * 110.70546 * 87.83355 * 17 15 2 35 35 H 1.09003 * 110.70691 * 324.59856 * 17 15 2 36 36 H 1.08996 * 109.88655 * 262.88029 * 18 17 15 37 37 H 1.08997 * 110.02440 * 141.76670 * 18 17 15 38 38 H 1.09001 * 109.47113 * 315.81284 * 20 19 18 39 39 H 1.09004 * 109.47381 * 195.81203 * 20 19 18 40 40 H 1.08003 * 117.96206 * 0.72376 * 22 21 20 41 41 H 1.08995 * 109.36029 * 222.66438 * 23 22 21 42 42 H 1.09002 * 109.35815 * 103.07426 * 23 22 21 43 43 H 1.09000 * 109.64163 * 289.75215 * 24 23 22 44 44 H 1.08997 * 109.64692 * 169.12098 * 24 23 22 45 45 H 1.08994 * 109.64340 * 172.88401 * 25 24 23 46 46 H 1.09002 * 109.82089 * 52.35183 * 25 24 23 47 47 H 1.09001 * 109.35539 * 282.78924 * 26 21 20 48 48 H 1.08995 * 109.36185 * 42.37976 * 26 21 20 49 49 H 1.08992 * 110.37190 * 94.73639 * 27 19 18 50 50 H 1.08997 * 110.37599 * 217.07875 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5617 3.8479 0.0003 7 6 1.4417 5.2082 -0.0013 8 1 0.3764 5.0305 -0.0020 9 6 1.9285 6.5080 -0.0006 10 7 1.0918 7.5241 -0.0013 11 14 3.7711 6.8153 0.0014 12 1 4.2608 6.8969 -1.3981 13 1 4.0591 8.0926 0.7019 14 1 4.4580 5.7006 0.7020 15 6 2.1974 -1.2688 0.0006 16 1 3.2728 -1.0964 0.0430 17 6 1.8207 -2.1285 -1.2346 18 6 2.0935 -3.5687 -0.7522 19 7 2.0465 -3.5519 0.7214 20 6 1.0523 -4.5076 1.2274 21 6 1.5988 -5.9075 1.1156 22 6 1.2751 -6.6041 0.0738 23 6 1.7271 -8.0145 -0.1684 24 6 2.9222 -8.3462 0.7279 25 6 2.5793 -7.9354 2.1654 26 6 2.4796 -6.4094 2.2221 27 6 1.7346 -2.1771 1.1669 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7591 2.5299 -0.8908 32 1 0.7585 2.5302 0.8892 33 1 1.4320 8.4326 -0.0012 34 1 2.4556 -1.8802 -2.0851 35 1 0.7683 -1.9996 -1.4874 36 1 3.0788 -3.8919 -1.0881 37 1 1.3301 -4.2431 -1.1399 38 1 0.1381 -4.4264 0.6392 39 1 0.8333 -4.2854 2.2718 40 1 0.6398 -6.1417 -0.6672 41 1 2.0169 -8.1267 -1.2131 42 1 0.9084 -8.6993 0.0529 43 1 3.7990 -7.7946 0.3885 44 1 3.1222 -9.4170 0.6906 45 1 3.3637 -8.2766 2.8410 46 1 1.6263 -8.3759 2.4584 47 1 3.4750 -5.9781 2.1154 48 1 2.0595 -6.1102 3.1823 49 1 0.6631 -2.0658 1.3324 50 1 2.2866 -1.9383 2.0759 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318387222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:58 Heat of formation + Delta-G solvation = -42.461300 kcal Electronic energy + Delta-G solvation = -26795.681328 eV Core-core repulsion = 23140.942159 eV Total energy + Delta-G solvation = -3654.739169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38181 -40.13186 -38.87861 -36.41755 -34.68022 -33.79568 -31.65957 -31.47645 -30.65060 -29.15639 -27.88887 -27.74546 -26.08991 -24.11250 -22.58396 -22.56355 -21.65445 -20.44609 -19.63971 -18.58729 -18.30071 -17.46435 -17.10211 -16.79129 -16.73757 -16.43594 -16.21389 -15.58427 -15.25222 -14.92241 -14.76581 -14.62178 -14.50754 -14.42715 -14.32885 -14.30920 -13.63526 -13.40254 -13.38610 -13.33399 -13.20764 -13.06247 -13.02914 -12.82117 -12.59846 -12.58999 -12.47217 -12.21620 -11.87673 -11.66374 -11.61648 -11.26117 -11.17973 -10.99932 -10.98206 -10.53651 -9.78510 -9.69109 -9.29381 -9.01623 -8.52337 -6.23488 0.95475 1.30432 1.30586 1.45049 1.46974 1.52632 1.98691 2.24219 2.66914 2.85921 3.12457 3.44770 3.58434 3.68013 3.79995 3.86122 4.00798 4.09206 4.09701 4.15547 4.19870 4.27169 4.31739 4.40550 4.44806 4.51173 4.57025 4.59011 4.62184 4.69934 4.74223 4.76897 4.81255 4.87532 4.91608 5.02445 5.04483 5.10342 5.13097 5.15684 5.23272 5.36520 5.45467 5.50923 5.69956 5.76026 5.91181 6.02947 6.10394 6.17910 6.20161 6.92941 7.03595 8.59848 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035213 B = 0.001862 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.960726 B =15036.342258 C =15235.647086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.599 5.599 3 C 0.534 3.466 4 O -0.562 6.562 5 C -0.104 4.104 6 S -0.179 6.179 7 C -0.528 4.528 8 H 0.064 0.936 9 C 0.047 3.953 10 N -0.915 5.915 11 Si 0.913 3.087 12 H -0.262 1.262 13 H -0.258 1.258 14 H -0.238 1.238 15 C 0.130 3.870 16 H 0.084 0.916 17 C -0.146 4.146 18 C 0.053 3.947 19 N -0.530 5.530 20 C 0.083 3.917 21 C -0.115 4.115 22 C -0.154 4.154 23 C -0.089 4.089 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.078 4.078 27 C 0.044 3.956 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.277 0.723 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 -34.524 0.980 34.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.332 5.332 3 C 0.321 3.679 4 O -0.440 6.440 5 C -0.255 4.255 6 S 0.048 5.952 7 C -0.675 4.675 8 H 0.082 0.918 9 C -0.158 4.158 10 N -0.553 5.553 11 Si 0.735 3.265 12 H -0.187 1.187 13 H -0.183 1.183 14 H -0.162 1.162 15 C 0.025 3.975 16 H 0.102 0.898 17 C -0.185 4.185 18 C -0.075 4.075 19 N -0.254 5.254 20 C -0.044 4.044 21 C -0.115 4.115 22 C -0.174 4.174 23 C -0.126 4.126 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.115 4.115 27 C -0.084 4.084 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.364 -34.483 1.197 34.531 hybrid contribution -1.659 1.260 -0.359 2.114 sum -3.023 -33.223 0.837 33.371 Atomic orbital electron populations 1.22104 0.77123 1.04782 1.03534 1.47665 1.08247 1.04176 1.73125 1.20076 0.87273 0.85314 0.75201 1.90680 1.15449 1.87355 1.50553 1.23275 1.01706 0.93344 1.07162 1.84760 1.13869 0.99006 1.97572 1.22437 0.94380 0.92423 1.58306 0.91821 1.25532 1.02639 0.94781 0.92896 1.70010 1.36709 0.99513 1.49077 0.85889 0.80341 0.80072 0.80209 1.18711 1.18266 1.16224 1.22146 0.97235 0.82143 0.95945 0.89755 1.23113 1.03051 0.94824 0.97482 1.22761 1.02360 0.95321 0.87069 1.63518 1.47894 1.04577 1.09456 1.21460 0.92089 0.90013 1.00874 1.20726 0.99271 0.94610 0.96928 1.22077 1.01327 0.96862 0.97086 1.20444 0.98088 0.93831 1.00201 1.21604 0.97810 1.01304 0.95113 1.21602 1.01913 0.95003 0.97071 1.20316 0.98800 0.95678 0.96709 1.23203 1.00463 0.87324 0.97454 0.90852 0.90213 0.88517 0.86870 0.86952 0.91357 0.90793 0.89287 0.90963 0.90817 0.93142 0.90260 0.87879 0.90688 0.90346 0.92656 0.90881 0.91328 0.91633 0.91708 0.91228 0.91316 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 8.92 127.77 1.14 2.24 16 2 N -0.60 -15.04 2.91 -814.87 -2.37 -17.41 16 3 C 0.53 18.97 7.69 87.66 0.67 19.65 16 4 O -0.56 -24.78 15.24 -3.04 -0.05 -24.83 16 5 C -0.10 -3.96 4.71 71.24 0.34 -3.62 16 6 S -0.18 -9.11 18.55 -56.49 -1.05 -10.16 16 7 C -0.53 -30.72 10.04 67.95 0.68 -30.04 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 C 0.05 2.76 5.50 84.86 0.47 3.23 16 10 N -0.92 -55.58 13.97 21.65 0.30 -55.27 16 11 Si 0.91 45.20 27.74 68.60 1.90 47.11 16 12 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 15 C 0.13 2.97 3.45 46.37 0.16 3.13 16 16 H 0.08 2.52 7.01 -2.39 -0.02 2.51 16 17 C -0.15 -2.52 6.50 31.77 0.21 -2.31 16 18 C 0.05 0.82 6.40 86.65 0.55 1.37 16 19 N -0.53 -9.01 5.10 -890.12 -4.54 -13.56 16 20 C 0.08 1.13 4.68 85.56 0.40 1.53 16 21 C -0.11 -1.56 5.15 -15.09 -0.08 -1.63 16 22 C -0.15 -1.87 8.75 27.05 0.24 -1.63 16 23 C -0.09 -0.89 6.12 29.66 0.18 -0.71 16 24 C -0.12 -1.26 6.01 30.73 0.18 -1.08 16 25 C -0.12 -1.28 6.01 30.74 0.18 -1.10 16 26 C -0.08 -1.04 5.81 29.66 0.17 -0.87 16 27 C 0.04 0.82 6.20 86.77 0.54 1.36 16 28 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 29 H 0.08 1.37 6.44 -2.39 -0.02 1.35 16 30 H 0.10 1.10 6.31 -2.39 -0.02 1.08 16 31 H 0.11 3.93 7.40 -2.39 -0.02 3.91 16 32 H 0.11 3.93 8.11 -2.39 -0.02 3.91 16 33 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.25 6.30 -2.39 -0.02 1.24 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 0.92 5.96 -2.39 -0.01 0.91 16 38 H 0.05 0.61 7.42 -2.39 -0.02 0.59 16 39 H 0.08 1.06 7.94 -2.39 -0.02 1.04 16 40 H 0.10 1.13 6.78 -2.91 -0.02 1.11 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 44 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 49 H 0.07 1.05 6.72 -2.39 -0.02 1.03 16 50 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -71.86 396.73 1.11 -70.76 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.87 Total: 13.85 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 6.04 Total: -10.48 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -6.61 Total: -86.24 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.11 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -71.86 1.11 -70.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318387222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.294 kcal (2) G-P(sol) polarization free energy of solvation -71.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds