Wall clock time and date at job start Tue Mar 31 2020 21:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00328 * 2 1 4 4 C 1.53002 * 109.46932 * 173.98710 * 3 2 1 5 5 C 1.50695 * 109.47093 * 53.98453 * 3 2 1 6 6 O 1.21284 * 119.99796 * 215.00286 * 5 3 2 7 7 N 1.34776 * 120.00092 * 34.99848 * 5 3 2 8 8 C 1.46505 * 119.99872 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.46927 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46653 * 304.99721 * 9 8 7 11 11 C 1.52999 * 109.47255 * 64.99665 * 9 8 7 12 12 C 1.53000 * 109.47054 * 185.00025 * 9 8 7 13 13 N 1.46496 * 109.47201 * 174.99669 * 12 9 8 14 14 C 1.36937 * 119.99847 * 179.97438 * 13 12 9 15 15 H 1.07995 * 120.00093 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99798 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00032 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99906 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46993 * 90.00084 * 18 16 14 20 20 H 1.48503 * 109.46849 * 209.99687 * 18 16 14 21 21 H 1.48495 * 109.47099 * 329.99740 * 18 16 14 22 22 C 1.50702 * 109.46931 * 293.98376 * 3 2 1 23 23 C 1.38216 * 120.01525 * 358.12675 * 22 3 2 24 24 C 1.38221 * 120.03096 * 180.02562 * 23 22 3 25 25 C 1.38277 * 120.04544 * 0.02562 * 24 23 22 26 26 C 1.38168 * 120.02567 * 359.97438 * 25 24 23 27 27 C 1.38433 * 120.01331 * 178.15108 * 22 3 2 28 28 F 1.35110 * 120.02339 * 359.95170 * 27 22 3 29 29 H 1.09004 * 109.46914 * 51.14992 * 1 2 3 30 30 H 1.08992 * 109.47495 * 171.15220 * 1 2 3 31 31 H 1.09001 * 109.46996 * 291.15671 * 1 2 3 32 32 H 1.09001 * 109.46456 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46846 * 299.99452 * 4 3 2 34 34 H 1.08996 * 109.47322 * 60.00003 * 4 3 2 35 35 H 0.96996 * 120.00323 * 0.02562 * 7 5 3 36 36 H 1.09005 * 109.46950 * 299.99754 * 8 7 5 37 37 H 1.08996 * 109.47238 * 60.00452 * 8 7 5 38 38 H 1.08996 * 109.47244 * 60.00418 * 11 9 8 39 39 H 1.09002 * 109.46816 * 180.02562 * 11 9 8 40 40 H 1.09004 * 109.47166 * 299.99849 * 11 9 8 41 41 H 1.08998 * 109.47030 * 294.99717 * 12 9 8 42 42 H 1.09001 * 109.46893 * 54.99308 * 12 9 8 43 43 H 0.97004 * 119.99969 * 359.97438 * 13 12 9 44 44 H 0.96993 * 119.99852 * 179.97438 * 17 16 14 45 45 H 1.08007 * 119.98745 * 0.02562 * 23 22 3 46 46 H 1.07997 * 119.97798 * 180.02562 * 24 23 22 47 47 H 1.07999 * 119.98180 * 180.27378 * 25 24 23 48 48 H 1.08006 * 120.01247 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5283 1.1877 0.1511 5 6 1.4515 2.1041 1.1492 6 8 1.2654 3.2962 1.0254 7 7 1.1583 1.4938 2.3145 8 6 0.6145 2.2702 3.4316 9 6 0.3726 1.3449 4.6259 10 1 -0.2667 0.5168 4.3201 11 6 1.7110 0.7980 5.1266 12 6 -0.3101 2.1289 5.7484 13 7 -0.6494 1.2176 6.8441 14 6 -1.2717 1.6973 7.9656 15 1 -1.5127 2.7472 8.0423 16 6 -1.5937 0.8336 9.0037 17 7 -2.1914 1.2947 10.0819 18 14 -1.1774 -0.9826 8.8708 19 1 0.1797 -1.2212 9.4243 20 1 -2.1713 -1.7756 9.6380 21 1 -1.2099 -1.3948 7.4445 22 6 1.6870 1.9992 -1.2982 23 6 0.9646 1.3387 -2.2739 24 6 0.6683 1.9745 -3.4649 25 6 1.0948 3.2718 -3.6819 26 6 1.8171 3.9342 -2.7079 27 6 2.1140 3.2982 -1.5141 28 9 2.8199 3.9451 -0.5608 29 1 -0.3633 0.6447 -0.8004 30 1 -0.3634 -1.0153 -0.1581 31 1 -0.3633 0.3709 0.9584 32 1 3.9716 2.1835 0.1516 33 1 3.7621 0.6859 1.0901 34 1 3.9325 0.6100 -0.6801 35 1 1.3074 0.5405 2.4137 36 1 1.3244 3.0481 3.7130 37 1 -0.3272 2.7292 3.1306 38 1 2.3503 1.6261 5.4323 39 1 1.5385 0.1385 5.9771 40 1 2.1973 0.2394 4.3268 41 1 0.3656 2.9019 6.1147 42 1 -1.2196 2.5926 5.3665 43 1 -0.4333 0.2745 6.7751 44 1 -2.4167 0.6911 10.8070 45 1 0.6313 0.3252 -2.1057 46 1 0.1034 1.4577 -4.2266 47 1 0.8590 3.7692 -4.6110 48 1 2.1498 4.9476 -2.8774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319197331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:45 Heat of formation + Delta-G solvation = -75.278791 kcal Electronic energy + Delta-G solvation = -30200.726036 eV Core-core repulsion = 25978.350618 eV Total energy + Delta-G solvation = -4222.375419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.97193 -41.14545 -39.09609 -37.79738 -36.99502 -34.55224 -33.16400 -32.50619 -31.15173 -30.56661 -29.95838 -26.98615 -26.69935 -25.88258 -24.54540 -23.11779 -22.63224 -21.70606 -20.58118 -19.94728 -18.37359 -18.00826 -17.44536 -16.99314 -16.40948 -15.98175 -15.95048 -15.65896 -15.29197 -15.17283 -14.89813 -14.81240 -14.37768 -14.10484 -13.76377 -13.72146 -13.28240 -13.17676 -12.87818 -12.81930 -12.70015 -12.54887 -12.42457 -12.40210 -12.20090 -12.13573 -11.80916 -11.46494 -11.41333 -11.06791 -10.79759 -10.67167 -10.63526 -10.57929 -10.13988 -9.71903 -9.59155 -9.28344 -9.14200 -8.92077 -8.91583 -7.24958 -5.77941 -3.13708 0.74867 0.87499 2.33495 2.81256 3.21719 3.27858 3.34773 3.37062 3.43200 3.97492 4.07611 4.35256 4.44171 4.52875 4.57184 4.66357 4.83883 4.89700 4.94253 5.02559 5.03982 5.07537 5.21153 5.22621 5.27136 5.39031 5.44004 5.52254 5.63917 5.65639 5.71380 5.72509 5.79229 5.83115 5.85149 5.89368 6.01398 6.06972 6.20686 6.32062 6.42739 6.49916 6.53628 6.63052 6.72747 7.32682 7.98219 8.00044 8.40949 9.19703 9.91778 10.11476 11.40514 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.002354 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.799186 B =11892.231515 C =12193.489265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.361 6.361 3 C 0.149 3.851 4 C -0.139 4.139 5 C 0.491 3.509 6 O -0.518 6.518 7 N -0.717 5.717 8 C 0.126 3.874 9 C -0.114 4.114 10 H 0.075 0.925 11 C -0.143 4.143 12 C 0.165 3.835 13 N -0.754 5.754 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.147 4.147 23 C -0.082 4.082 24 C -0.140 4.140 25 C -0.084 4.084 26 C -0.163 4.163 27 C 0.146 3.854 28 F -0.120 7.120 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.404 0.596 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.031 0.969 42 H 0.029 0.971 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.142 0.858 46 H 0.130 0.870 47 H 0.132 0.868 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 -1.799 -31.226 32.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.279 6.279 3 C 0.106 3.894 4 C -0.196 4.196 5 C 0.275 3.725 6 O -0.393 6.393 7 N -0.370 5.370 8 C 0.002 3.998 9 C -0.133 4.133 10 H 0.094 0.906 11 C -0.201 4.201 12 C 0.038 3.962 13 N -0.400 5.400 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.582 5.582 18 Si 0.715 3.285 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.149 4.149 23 C -0.100 4.100 24 C -0.158 4.158 25 C -0.102 4.102 26 C -0.182 4.182 27 C 0.126 3.874 28 F -0.098 7.098 29 H 0.078 0.922 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.240 0.760 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.194 0.806 44 H 0.070 0.930 45 H 0.160 0.840 46 H 0.148 0.852 47 H 0.150 0.850 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.237 -0.903 -31.075 32.731 hybrid contribution 0.108 -1.440 0.330 1.482 sum 10.345 -2.344 -30.746 32.524 Atomic orbital electron populations 1.23353 0.80442 1.03840 1.02241 1.88017 1.20457 1.24838 1.94632 1.20460 0.96298 0.82918 0.89759 1.21844 0.89380 1.04246 1.04174 1.20901 0.78776 0.88557 0.84272 1.90768 1.51469 1.14669 1.82380 1.46101 1.65129 1.12959 1.12786 1.21443 0.99250 0.94161 0.84914 1.21605 0.98048 0.98682 0.95006 0.90621 1.21813 0.96144 1.01345 1.00785 1.20543 0.96443 0.92404 0.86849 1.42683 1.73220 1.06285 1.17811 1.19061 1.30173 0.95723 0.92405 0.89183 1.24682 1.00684 0.97529 0.96334 1.69699 1.46686 1.34360 1.07439 0.86546 0.77959 0.86860 0.77145 1.21045 1.21708 1.20397 1.19966 1.03439 0.94332 0.97177 1.21092 0.95981 1.00513 0.92386 1.21160 1.01722 0.95423 0.97497 1.21065 0.95939 0.94591 0.98619 1.21173 1.02502 1.01403 0.93152 1.17350 0.93706 0.89938 0.86375 1.91549 1.75068 1.80808 1.62416 0.92165 0.88444 0.92694 0.89682 0.90489 0.90193 0.75988 0.90971 0.91136 0.92299 0.91810 0.93579 0.95084 0.95325 0.80626 0.93044 0.84030 0.85178 0.84994 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.09 101.05 0.92 0.90 16 2 O -0.36 -3.36 9.10 -35.23 -0.32 -3.68 16 3 C 0.15 1.56 0.80 -92.92 -0.07 1.48 16 4 C -0.14 -1.26 8.63 37.16 0.32 -0.94 16 5 C 0.49 6.29 5.51 -10.99 -0.06 6.23 16 6 O -0.52 -8.36 13.35 5.55 0.07 -8.29 16 7 N -0.72 -8.29 4.04 -60.29 -0.24 -8.53 16 8 C 0.13 1.65 5.07 -4.04 -0.02 1.63 16 9 C -0.11 -1.63 2.46 -90.62 -0.22 -1.86 16 10 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 11 C -0.14 -1.94 8.94 37.16 0.33 -1.61 16 12 C 0.17 3.12 5.65 -4.04 -0.02 3.10 16 13 N -0.75 -17.68 5.13 -59.91 -0.31 -17.99 16 14 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 16 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 17 N -0.93 -29.44 13.97 55.49 0.78 -28.67 16 18 Si 0.88 21.96 27.74 -169.99 -4.71 17.24 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 22 C -0.15 -1.56 4.41 -104.56 -0.46 -2.02 16 23 C -0.08 -0.69 7.68 -39.60 -0.30 -1.00 16 24 C -0.14 -0.99 10.05 -39.57 -0.40 -1.38 16 25 C -0.08 -0.60 10.04 -39.59 -0.40 -1.00 16 26 C -0.16 -1.48 10.03 -39.52 -0.40 -1.88 16 27 C 0.15 1.67 6.19 -39.42 -0.24 1.42 16 28 F -0.12 -1.61 12.92 2.25 0.03 -1.58 16 29 H 0.06 0.48 5.02 -51.93 -0.26 0.22 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.50 6.33 -51.93 -0.33 0.17 16 32 H 0.08 0.83 6.46 -51.93 -0.34 0.49 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.40 4.03 6.82 -40.82 -0.28 3.75 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.97 7.18 -51.93 -0.37 0.60 16 40 H 0.05 0.51 7.18 -51.93 -0.37 0.13 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.36 8.17 4.71 -40.82 -0.19 7.98 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.14 1.00 5.44 -52.48 -0.29 0.72 16 46 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 47 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 48 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -34.19 380.45 -7.35 -41.54 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.09 Total: 8.21 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.28 Total: -3.99 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.22 Total: -55.19 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.25 Total: -11.97 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.19 -7.35 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319197331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.741 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds