Wall clock time and date at job start Tue Mar 31 2020 21:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00328 * 2 1 4 4 C 1.53002 * 109.46932 * 173.98710 * 3 2 1 5 5 C 1.50695 * 109.47093 * 53.98453 * 3 2 1 6 6 O 1.21284 * 119.99796 * 215.00286 * 5 3 2 7 7 N 1.34776 * 120.00092 * 34.99848 * 5 3 2 8 8 C 1.46505 * 119.99872 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.46927 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46653 * 304.99721 * 9 8 7 11 11 C 1.52999 * 109.47255 * 64.99665 * 9 8 7 12 12 C 1.53000 * 109.47054 * 185.00025 * 9 8 7 13 13 N 1.46496 * 109.47201 * 174.99669 * 12 9 8 14 14 C 1.36937 * 119.99847 * 179.97438 * 13 12 9 15 15 H 1.07995 * 120.00093 * 0.02562 * 14 13 12 16 16 C 1.38815 * 119.99798 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00032 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99906 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46993 * 90.00084 * 18 16 14 20 20 H 1.48503 * 109.46849 * 209.99687 * 18 16 14 21 21 H 1.48495 * 109.47099 * 329.99740 * 18 16 14 22 22 C 1.50702 * 109.46931 * 293.98376 * 3 2 1 23 23 C 1.38216 * 120.01525 * 358.12675 * 22 3 2 24 24 C 1.38221 * 120.03096 * 180.02562 * 23 22 3 25 25 C 1.38277 * 120.04544 * 0.02562 * 24 23 22 26 26 C 1.38168 * 120.02567 * 359.97438 * 25 24 23 27 27 C 1.38433 * 120.01331 * 178.15108 * 22 3 2 28 28 F 1.35110 * 120.02339 * 359.95170 * 27 22 3 29 29 H 1.09004 * 109.46914 * 51.14992 * 1 2 3 30 30 H 1.08992 * 109.47495 * 171.15220 * 1 2 3 31 31 H 1.09001 * 109.46996 * 291.15671 * 1 2 3 32 32 H 1.09001 * 109.46456 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46846 * 299.99452 * 4 3 2 34 34 H 1.08996 * 109.47322 * 60.00003 * 4 3 2 35 35 H 0.96996 * 120.00323 * 0.02562 * 7 5 3 36 36 H 1.09005 * 109.46950 * 299.99754 * 8 7 5 37 37 H 1.08996 * 109.47238 * 60.00452 * 8 7 5 38 38 H 1.08996 * 109.47244 * 60.00418 * 11 9 8 39 39 H 1.09002 * 109.46816 * 180.02562 * 11 9 8 40 40 H 1.09004 * 109.47166 * 299.99849 * 11 9 8 41 41 H 1.08998 * 109.47030 * 294.99717 * 12 9 8 42 42 H 1.09001 * 109.46893 * 54.99308 * 12 9 8 43 43 H 0.97004 * 119.99969 * 359.97438 * 13 12 9 44 44 H 0.96993 * 119.99852 * 179.97438 * 17 16 14 45 45 H 1.08007 * 119.98745 * 0.02562 * 23 22 3 46 46 H 1.07997 * 119.97798 * 180.02562 * 24 23 22 47 47 H 1.07999 * 119.98180 * 180.27378 * 25 24 23 48 48 H 1.08006 * 120.01247 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5283 1.1877 0.1511 5 6 1.4515 2.1041 1.1492 6 8 1.2654 3.2962 1.0254 7 7 1.1583 1.4938 2.3145 8 6 0.6145 2.2702 3.4316 9 6 0.3726 1.3449 4.6259 10 1 -0.2667 0.5168 4.3201 11 6 1.7110 0.7980 5.1266 12 6 -0.3101 2.1289 5.7484 13 7 -0.6494 1.2176 6.8441 14 6 -1.2717 1.6973 7.9656 15 1 -1.5127 2.7472 8.0423 16 6 -1.5937 0.8336 9.0037 17 7 -2.1914 1.2947 10.0819 18 14 -1.1774 -0.9826 8.8708 19 1 0.1797 -1.2212 9.4243 20 1 -2.1713 -1.7756 9.6380 21 1 -1.2099 -1.3948 7.4445 22 6 1.6870 1.9992 -1.2982 23 6 0.9646 1.3387 -2.2739 24 6 0.6683 1.9745 -3.4649 25 6 1.0948 3.2718 -3.6819 26 6 1.8171 3.9342 -2.7079 27 6 2.1140 3.2982 -1.5141 28 9 2.8199 3.9451 -0.5608 29 1 -0.3633 0.6447 -0.8004 30 1 -0.3634 -1.0153 -0.1581 31 1 -0.3633 0.3709 0.9584 32 1 3.9716 2.1835 0.1516 33 1 3.7621 0.6859 1.0901 34 1 3.9325 0.6100 -0.6801 35 1 1.3074 0.5405 2.4137 36 1 1.3244 3.0481 3.7130 37 1 -0.3272 2.7292 3.1306 38 1 2.3503 1.6261 5.4323 39 1 1.5385 0.1385 5.9771 40 1 2.1973 0.2394 4.3268 41 1 0.3656 2.9019 6.1147 42 1 -1.2196 2.5926 5.3665 43 1 -0.4333 0.2745 6.7751 44 1 -2.4167 0.6911 10.8070 45 1 0.6313 0.3252 -2.1057 46 1 0.1034 1.4577 -4.2266 47 1 0.8590 3.7692 -4.6110 48 1 2.1498 4.9476 -2.8774 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319197331.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:44 Heat of formation + Delta-G solvation = -98.125387 kcal Electronic energy + Delta-G solvation = -30201.716739 eV Core-core repulsion = 25978.350618 eV Total energy + Delta-G solvation = -4223.366121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.81190 -41.97848 -39.91220 -38.59145 -38.28227 -36.11251 -34.16600 -33.88165 -32.42084 -31.74618 -30.63853 -28.01383 -27.57382 -27.29776 -25.47668 -24.09005 -23.76493 -22.90999 -21.71694 -21.06693 -19.74296 -18.97712 -18.71845 -17.77291 -17.18115 -17.03242 -16.83399 -16.58036 -16.46344 -16.10289 -15.93623 -15.81414 -15.67592 -15.24249 -15.13300 -14.88635 -14.47697 -14.23085 -13.99331 -13.86196 -13.66623 -13.54221 -13.37708 -13.31963 -13.19033 -13.08957 -12.87967 -12.76798 -12.42996 -12.29143 -12.13894 -12.03761 -12.01883 -11.78833 -11.71417 -11.38990 -10.99940 -10.61848 -10.16794 -9.93408 -9.60968 -9.31994 -8.03748 -5.38179 0.10838 0.23245 1.36762 1.36871 1.41861 1.49069 1.91306 2.47914 2.49010 2.62207 3.27286 3.28159 3.38834 3.47634 3.52830 3.76936 3.88113 3.90571 3.98081 4.08549 4.12785 4.33218 4.36312 4.41357 4.44184 4.47827 4.54963 4.61523 4.63528 4.70976 4.81616 4.85017 4.89086 4.97921 5.00260 5.06177 5.09819 5.16707 5.22688 5.29857 5.30938 5.41340 5.42844 5.73841 5.76697 5.91999 6.19720 6.40042 7.04940 7.06490 7.81030 8.02126 9.17858 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.002354 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.799186 B =11892.231515 C =12193.489265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.357 6.357 3 C 0.154 3.846 4 C -0.139 4.139 5 C 0.489 3.511 6 O -0.555 6.555 7 N -0.706 5.706 8 C 0.136 3.864 9 C -0.097 4.097 10 H 0.087 0.913 11 C -0.142 4.142 12 C 0.160 3.840 13 N -0.753 5.753 14 C -0.238 4.238 15 H 0.052 0.948 16 C -0.067 4.067 17 N -0.985 5.985 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.296 1.296 21 H -0.247 1.247 22 C -0.164 4.164 23 C -0.087 4.087 24 C -0.134 4.134 25 C -0.081 4.081 26 C -0.175 4.175 27 C 0.111 3.889 28 F -0.142 7.142 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.415 0.585 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.368 0.632 44 H 0.258 0.742 45 H 0.157 0.843 46 H 0.162 0.838 47 H 0.163 0.837 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.892 -4.548 -34.296 36.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.276 6.276 3 C 0.111 3.889 4 C -0.196 4.196 5 C 0.274 3.726 6 O -0.433 6.433 7 N -0.359 5.359 8 C 0.012 3.988 9 C -0.116 4.116 10 H 0.106 0.894 11 C -0.199 4.199 12 C 0.034 3.966 13 N -0.400 5.400 14 C -0.369 4.369 15 H 0.071 0.929 16 C -0.258 4.258 17 N -0.635 5.635 18 Si 0.785 3.215 19 H -0.202 1.202 20 H -0.222 1.222 21 H -0.171 1.171 22 C -0.166 4.166 23 C -0.105 4.105 24 C -0.152 4.152 25 C -0.098 4.098 26 C -0.193 4.193 27 C 0.091 3.909 28 F -0.120 7.120 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.253 0.747 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.203 0.797 44 H 0.067 0.933 45 H 0.174 0.826 46 H 0.180 0.820 47 H 0.181 0.819 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.805 -3.670 -34.199 36.052 hybrid contribution -0.116 -0.457 1.208 1.297 sum 10.690 -4.128 -32.991 34.924 Atomic orbital electron populations 1.23501 0.79753 1.05433 1.01631 1.88027 1.21150 1.23853 1.94528 1.20371 0.96785 0.82989 0.88778 1.21856 0.88577 1.03878 1.05253 1.21426 0.77976 0.88298 0.84857 1.90753 1.53022 1.16483 1.83059 1.45951 1.64571 1.13282 1.12072 1.21171 0.98729 0.93838 0.85037 1.21386 0.98374 0.98348 0.93476 0.89426 1.21804 0.95538 1.01232 1.01339 1.20680 0.96473 0.92357 0.87124 1.42618 1.72673 1.07234 1.17431 1.19022 1.29577 0.94254 0.94054 0.92947 1.25588 1.01135 1.03163 0.95907 1.69897 1.48683 1.36341 1.08602 0.85358 0.77548 0.79838 0.78750 1.20208 1.22250 1.17086 1.20099 1.04415 0.94310 0.97737 1.21353 0.95483 1.01180 0.92482 1.21589 1.00749 0.95335 0.97494 1.21469 0.94555 0.94734 0.99078 1.21442 1.02856 1.02053 0.92972 1.17771 0.95212 0.90857 0.87031 1.91485 1.75804 1.81303 1.63409 0.92099 0.85841 0.93902 0.90936 0.89600 0.88786 0.74714 0.91859 0.92053 0.92751 0.93096 0.90486 0.95758 0.95897 0.79748 0.93278 0.82596 0.82019 0.81927 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 9.09 113.37 1.03 0.93 16 2 O -0.36 -5.78 9.10 -148.98 -1.36 -7.13 16 3 C 0.15 3.05 0.80 -12.29 -0.01 3.04 16 4 C -0.14 -2.37 8.63 71.98 0.62 -1.75 16 5 C 0.49 12.27 5.51 87.66 0.48 12.76 16 6 O -0.56 -18.32 13.35 -3.04 -0.04 -18.36 16 7 N -0.71 -15.32 4.04 -463.04 -1.87 -17.19 16 8 C 0.14 3.49 5.07 86.38 0.44 3.92 16 9 C -0.10 -2.61 2.46 -10.79 -0.03 -2.63 16 10 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 11 C -0.14 -3.51 8.94 71.98 0.64 -2.86 16 12 C 0.16 6.02 5.65 86.38 0.49 6.51 16 13 N -0.75 -34.79 5.13 -343.46 -1.76 -36.55 16 14 C -0.24 -13.75 10.47 84.03 0.88 -12.87 16 15 H 0.05 3.35 8.06 -2.91 -0.02 3.32 16 16 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 17 N -0.98 -63.68 13.97 21.65 0.30 -63.38 16 18 Si 0.96 44.84 27.74 68.60 1.90 46.75 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 22 C -0.16 -3.31 4.41 -19.82 -0.09 -3.40 16 23 C -0.09 -1.28 7.68 22.26 0.17 -1.11 16 24 C -0.13 -1.47 10.05 22.27 0.22 -1.25 16 25 C -0.08 -0.95 10.04 22.26 0.22 -0.73 16 26 C -0.17 -3.04 10.03 22.31 0.22 -2.82 16 27 C 0.11 2.55 6.19 22.37 0.14 2.68 16 28 F -0.14 -3.98 12.92 44.97 0.58 -3.40 16 29 H 0.06 0.83 5.02 -2.38 -0.01 0.82 16 30 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.69 6.33 -2.39 -0.02 0.68 16 32 H 0.07 1.43 6.46 -2.39 -0.02 1.41 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.41 7.21 6.82 -92.71 -0.63 6.58 16 36 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.41 7.18 -2.39 -0.02 1.39 16 40 H 0.08 1.43 7.18 -2.39 -0.02 1.41 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.37 15.84 4.71 -92.71 -0.44 15.41 16 44 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 45 H 0.16 1.74 5.44 -2.91 -0.02 1.72 16 46 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 47 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 48 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -76.76 380.45 3.53 -73.23 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.14 Total: 29.10 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.91 Total: -3.06 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -3.33 Total: -117.13 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -1.40 Total: -25.49 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.58 Total: -3.40 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.75 kcal Total: -76.76 3.53 -73.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319197331.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.892 kcal (2) G-P(sol) polarization free energy of solvation -76.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds