Wall clock time and date at job start Tue Mar 31 2020 21:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00052 * 2 1 4 4 C 1.52997 * 109.47418 * 173.25656 * 3 2 1 5 5 C 1.50697 * 109.47135 * 53.25551 * 3 2 1 6 6 O 1.21283 * 120.00184 * 215.00736 * 5 3 2 7 7 N 1.34781 * 120.00152 * 34.72294 * 5 3 2 8 8 C 1.46497 * 120.00274 * 180.27740 * 7 5 3 9 9 C 1.53001 * 109.47193 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.46878 * 54.99752 * 9 8 7 11 11 C 1.52998 * 109.47065 * 294.99857 * 9 8 7 12 12 C 1.53001 * 109.46928 * 175.00024 * 9 8 7 13 13 N 1.46503 * 109.46681 * 185.00054 * 12 9 8 14 14 C 1.36943 * 119.99610 * 180.02562 * 13 12 9 15 15 H 1.08001 * 120.00212 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99426 * 180.02562 * 14 13 12 17 17 N 1.31613 * 120.00532 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99513 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47249 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46962 * 119.99543 * 18 16 14 21 21 H 1.48494 * 109.46899 * 239.99474 * 18 16 14 22 22 C 1.50707 * 109.47055 * 293.25781 * 3 2 1 23 23 C 1.38218 * 120.01120 * 357.47285 * 22 3 2 24 24 C 1.38220 * 120.02440 * 179.97438 * 23 22 3 25 25 C 1.38269 * 120.05166 * 0.02562 * 24 23 22 26 26 C 1.38170 * 120.02591 * 0.02562 * 25 24 23 27 27 C 1.38431 * 120.01096 * 177.19871 * 22 3 2 28 28 F 1.35097 * 120.03158 * 359.97438 * 27 22 3 29 29 H 1.09000 * 109.46868 * 52.13714 * 1 2 3 30 30 H 1.09002 * 109.47100 * 172.14061 * 1 2 3 31 31 H 1.09004 * 109.47238 * 292.13675 * 1 2 3 32 32 H 1.09001 * 109.46782 * 300.00125 * 4 3 2 33 33 H 1.08997 * 109.47360 * 59.99730 * 4 3 2 34 34 H 1.08996 * 109.47158 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99545 * 0.28260 * 7 5 3 36 36 H 1.09008 * 109.46996 * 300.00198 * 8 7 5 37 37 H 1.08994 * 109.47373 * 59.99942 * 8 7 5 38 38 H 1.09000 * 109.46968 * 59.99472 * 11 9 8 39 39 H 1.08991 * 109.47555 * 180.02562 * 11 9 8 40 40 H 1.09005 * 109.47380 * 300.00328 * 11 9 8 41 41 H 1.09005 * 109.46964 * 304.99632 * 12 9 8 42 42 H 1.08993 * 109.47371 * 65.00046 * 12 9 8 43 43 H 0.96998 * 120.00456 * 359.97438 * 13 12 9 44 44 H 0.96998 * 120.00336 * 180.02562 * 17 16 14 45 45 H 1.07997 * 119.98796 * 359.97438 * 23 22 3 46 46 H 1.07998 * 119.97384 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.98369 * 179.97438 * 25 24 23 48 48 H 1.07995 * 120.01482 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5263 1.1888 0.1694 5 6 1.4381 2.1101 1.1385 6 8 1.2534 3.3015 1.0064 7 7 1.1262 1.5048 2.3016 8 6 0.5643 2.2858 3.4063 9 6 0.3034 1.3657 4.6005 10 1 1.2221 0.8410 4.8624 11 6 -0.7783 0.3479 4.2333 12 6 -0.1656 2.2000 5.7942 13 7 -0.3008 1.3368 6.9702 14 6 -0.7114 1.8663 8.1646 15 1 -0.9351 2.9202 8.2397 16 6 -0.8390 1.0484 9.2789 17 7 -0.5659 -0.2358 9.1876 18 14 -1.3984 1.7708 10.9083 19 1 -1.6394 3.2272 10.7474 20 1 -2.6540 1.1055 11.3397 21 1 -0.3459 1.5539 11.9332 22 6 1.7020 1.9926 -1.3054 23 6 1.0026 1.3222 -2.2913 24 6 0.7193 1.9523 -3.4884 25 6 1.1356 3.2536 -3.7015 26 6 1.8358 3.9253 -2.7179 27 6 2.1143 3.2973 -1.5154 28 9 2.7927 3.9556 -0.5502 29 1 -0.3633 0.6308 -0.8113 30 1 -0.3633 -1.0180 -0.1405 31 1 -0.3634 0.3873 0.9519 32 1 3.7492 0.6918 1.1136 33 1 3.9402 0.6068 -0.6540 34 1 3.9696 2.1846 0.1698 35 1 1.2739 0.5519 2.4073 36 1 1.2694 3.0652 3.6958 37 1 -0.3724 2.7434 3.0882 38 1 -0.4442 -0.2464 3.3828 39 1 -0.9646 -0.3074 5.0841 40 1 -1.6971 0.8726 3.9713 41 1 0.5648 2.9825 6.0000 42 1 -1.1294 2.6540 5.5640 43 1 -0.1003 0.3902 6.9027 44 1 -0.6554 -0.8073 9.9662 45 1 0.6774 0.3057 -2.1261 46 1 0.1724 1.4279 -4.2580 47 1 0.9140 3.7447 -4.6375 48 1 2.1611 4.9415 -2.8846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319197338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:54 Heat of formation + Delta-G solvation = -80.452658 kcal Electronic energy + Delta-G solvation = -30147.946541 eV Core-core repulsion = 25925.346767 eV Total energy + Delta-G solvation = -4222.599774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.92202 -41.08888 -39.03859 -37.72973 -36.85331 -34.40968 -33.11006 -32.47279 -31.09402 -30.17110 -29.81259 -26.98938 -26.53214 -25.59757 -24.49223 -23.07427 -22.81882 -21.85991 -20.46019 -19.80069 -18.25420 -17.94452 -17.09800 -16.87533 -16.36553 -15.98899 -15.73776 -15.61999 -15.25420 -15.13551 -14.99799 -14.60242 -14.25043 -14.08277 -13.67888 -13.64477 -13.23032 -13.03939 -12.81355 -12.80182 -12.68125 -12.46821 -12.38889 -12.24630 -12.09946 -12.04297 -11.78552 -11.36904 -11.07280 -10.93210 -10.72986 -10.62810 -10.54445 -10.40457 -10.02520 -9.74464 -9.62092 -9.24662 -9.06985 -8.89106 -8.87135 -6.92937 -5.77716 -3.06121 0.78590 0.91121 2.39563 2.87445 3.26980 3.32766 3.43132 3.49128 3.51185 4.02036 4.12294 4.40750 4.49303 4.56820 4.58867 4.70879 4.92910 4.99235 5.02238 5.08182 5.09331 5.19581 5.27702 5.32671 5.36028 5.45076 5.48031 5.57184 5.70021 5.76622 5.79188 5.83580 5.92312 5.93549 5.96431 6.04726 6.08976 6.22179 6.35747 6.41750 6.55835 6.57525 6.63627 6.75975 6.85100 7.40333 7.70509 8.06556 8.41364 9.52770 10.09880 10.44738 11.45327 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025501 B = 0.002198 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.745711 B =12734.184682 C =13135.089218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.360 6.360 3 C 0.149 3.851 4 C -0.139 4.139 5 C 0.491 3.509 6 O -0.519 6.519 7 N -0.716 5.716 8 C 0.126 3.874 9 C -0.110 4.110 10 H 0.077 0.923 11 C -0.141 4.141 12 C 0.161 3.839 13 N -0.731 5.731 14 C -0.238 4.238 15 H 0.071 0.929 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.147 4.147 23 C -0.080 4.080 24 C -0.141 4.141 25 C -0.084 4.084 26 C -0.164 4.164 27 C 0.146 3.854 28 F -0.119 7.119 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.405 0.595 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.142 0.858 46 H 0.130 0.870 47 H 0.132 0.868 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.283 1.139 -29.460 29.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.279 6.279 3 C 0.106 3.894 4 C -0.196 4.196 5 C 0.274 3.726 6 O -0.395 6.395 7 N -0.368 5.368 8 C 0.002 3.998 9 C -0.129 4.129 10 H 0.095 0.905 11 C -0.199 4.199 12 C 0.033 3.967 13 N -0.375 5.375 14 C -0.369 4.369 15 H 0.089 0.911 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.149 4.149 23 C -0.098 4.098 24 C -0.159 4.159 25 C -0.102 4.102 26 C -0.183 4.183 27 C 0.127 3.873 28 F -0.098 7.098 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.241 0.759 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.159 0.841 46 H 0.148 0.852 47 H 0.150 0.850 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.221 1.996 -29.356 29.883 hybrid contribution -0.326 -0.086 1.201 1.247 sum 4.895 1.910 -28.155 28.641 Atomic orbital electron populations 1.23347 0.80463 1.03803 1.02236 1.88020 1.20443 1.24807 1.94620 1.20459 0.96304 0.82936 0.89750 1.21837 0.89420 1.04189 1.04188 1.20901 0.78871 0.88570 0.84217 1.90763 1.51948 1.14754 1.81997 1.46118 1.64180 1.13058 1.13482 1.21463 0.98771 0.94117 0.85437 1.21552 0.99905 0.96982 0.94501 0.90453 1.21799 0.98097 0.98855 1.01139 1.20567 0.97377 0.92756 0.86010 1.42347 1.81571 1.08051 1.05561 1.19282 1.36859 0.93606 0.87144 0.91113 1.24739 1.02573 0.95633 0.98137 1.69661 1.55522 1.03587 1.29516 0.86110 0.77896 0.78074 0.84087 1.20547 1.21874 1.21874 1.19982 1.03631 0.94189 0.97102 1.21068 0.95997 1.00482 0.92276 1.21152 1.01835 0.95400 0.97487 1.21056 0.96045 0.94540 0.98606 1.21171 1.02737 1.01434 0.92980 1.17356 0.94112 0.89769 0.86088 1.91553 1.76406 1.80243 1.61553 0.92384 0.88453 0.92533 0.90413 0.90203 0.89760 0.75913 0.91202 0.91333 0.93920 0.91048 0.92868 0.96125 0.96034 0.78197 0.93574 0.84088 0.85212 0.85040 0.84623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.12 101.05 0.92 0.90 16 2 O -0.36 -3.52 9.08 -35.23 -0.32 -3.84 16 3 C 0.15 1.63 0.81 -92.92 -0.07 1.56 16 4 C -0.14 -1.34 8.64 37.16 0.32 -1.02 16 5 C 0.49 6.56 5.50 -10.99 -0.06 6.50 16 6 O -0.52 -8.64 13.25 5.56 0.07 -8.56 16 7 N -0.72 -8.80 3.99 -60.29 -0.24 -9.04 16 8 C 0.13 1.76 5.06 -4.04 -0.02 1.74 16 9 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 10 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 11 C -0.14 -2.07 8.94 37.16 0.33 -1.74 16 12 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 13 N -0.73 -18.31 5.33 -59.90 -0.32 -18.63 16 14 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 18 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 C -0.15 -1.61 4.42 -104.55 -0.46 -2.07 16 23 C -0.08 -0.70 7.70 -39.60 -0.30 -1.01 16 24 C -0.14 -1.03 10.04 -39.58 -0.40 -1.42 16 25 C -0.08 -0.62 10.04 -39.59 -0.40 -1.02 16 26 C -0.16 -1.54 10.03 -39.51 -0.40 -1.93 16 27 C 0.15 1.73 6.19 -39.42 -0.24 1.48 16 28 F -0.12 -1.65 12.89 2.25 0.03 -1.62 16 29 H 0.06 0.48 5.13 -51.93 -0.27 0.21 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.54 6.22 -51.93 -0.32 0.22 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.86 6.53 -51.93 -0.34 0.53 16 35 H 0.40 4.39 6.78 -40.82 -0.28 4.11 16 36 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 39 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.38 10.00 6.85 -40.82 -0.28 9.72 16 44 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.14 1.04 5.53 -52.49 -0.29 0.75 16 46 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -33.19 383.54 -7.71 -40.90 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.14 Total: 9.09 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.28 Total: -4.13 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.16 Total: -55.09 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.25 Total: -12.40 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.03 Total: -1.62 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.19 -7.71 -40.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319197338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.550 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds