Wall clock time and date at job start Tue Mar 31 2020 21:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 114.00052 * 2 1 4 4 C 1.52997 * 109.47418 * 173.25656 * 3 2 1 5 5 C 1.50697 * 109.47135 * 53.25551 * 3 2 1 6 6 O 1.21283 * 120.00184 * 215.00736 * 5 3 2 7 7 N 1.34781 * 120.00152 * 34.72294 * 5 3 2 8 8 C 1.46497 * 120.00274 * 180.27740 * 7 5 3 9 9 C 1.53001 * 109.47193 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.46878 * 54.99752 * 9 8 7 11 11 C 1.52998 * 109.47065 * 294.99857 * 9 8 7 12 12 C 1.53001 * 109.46928 * 175.00024 * 9 8 7 13 13 N 1.46503 * 109.46681 * 185.00054 * 12 9 8 14 14 C 1.36943 * 119.99610 * 180.02562 * 13 12 9 15 15 H 1.08001 * 120.00212 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99426 * 180.02562 * 14 13 12 17 17 N 1.31613 * 120.00532 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99513 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47249 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.46962 * 119.99543 * 18 16 14 21 21 H 1.48494 * 109.46899 * 239.99474 * 18 16 14 22 22 C 1.50707 * 109.47055 * 293.25781 * 3 2 1 23 23 C 1.38218 * 120.01120 * 357.47285 * 22 3 2 24 24 C 1.38220 * 120.02440 * 179.97438 * 23 22 3 25 25 C 1.38269 * 120.05166 * 0.02562 * 24 23 22 26 26 C 1.38170 * 120.02591 * 0.02562 * 25 24 23 27 27 C 1.38431 * 120.01096 * 177.19871 * 22 3 2 28 28 F 1.35097 * 120.03158 * 359.97438 * 27 22 3 29 29 H 1.09000 * 109.46868 * 52.13714 * 1 2 3 30 30 H 1.09002 * 109.47100 * 172.14061 * 1 2 3 31 31 H 1.09004 * 109.47238 * 292.13675 * 1 2 3 32 32 H 1.09001 * 109.46782 * 300.00125 * 4 3 2 33 33 H 1.08997 * 109.47360 * 59.99730 * 4 3 2 34 34 H 1.08996 * 109.47158 * 180.02562 * 4 3 2 35 35 H 0.96999 * 119.99545 * 0.28260 * 7 5 3 36 36 H 1.09008 * 109.46996 * 300.00198 * 8 7 5 37 37 H 1.08994 * 109.47373 * 59.99942 * 8 7 5 38 38 H 1.09000 * 109.46968 * 59.99472 * 11 9 8 39 39 H 1.08991 * 109.47555 * 180.02562 * 11 9 8 40 40 H 1.09005 * 109.47380 * 300.00328 * 11 9 8 41 41 H 1.09005 * 109.46964 * 304.99632 * 12 9 8 42 42 H 1.08993 * 109.47371 * 65.00046 * 12 9 8 43 43 H 0.96998 * 120.00456 * 359.97438 * 13 12 9 44 44 H 0.96998 * 120.00336 * 180.02562 * 17 16 14 45 45 H 1.07997 * 119.98796 * 359.97438 * 23 22 3 46 46 H 1.07998 * 119.97384 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.98369 * 179.97438 * 25 24 23 48 48 H 1.07995 * 120.01482 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5263 1.1888 0.1694 5 6 1.4381 2.1101 1.1385 6 8 1.2534 3.3015 1.0064 7 7 1.1262 1.5048 2.3016 8 6 0.5643 2.2858 3.4063 9 6 0.3034 1.3657 4.6005 10 1 1.2221 0.8410 4.8624 11 6 -0.7783 0.3479 4.2333 12 6 -0.1656 2.2000 5.7942 13 7 -0.3008 1.3368 6.9702 14 6 -0.7114 1.8663 8.1646 15 1 -0.9351 2.9202 8.2397 16 6 -0.8390 1.0484 9.2789 17 7 -0.5659 -0.2358 9.1876 18 14 -1.3984 1.7708 10.9083 19 1 -1.6394 3.2272 10.7474 20 1 -2.6540 1.1055 11.3397 21 1 -0.3459 1.5539 11.9332 22 6 1.7020 1.9926 -1.3054 23 6 1.0026 1.3222 -2.2913 24 6 0.7193 1.9523 -3.4884 25 6 1.1356 3.2536 -3.7015 26 6 1.8358 3.9253 -2.7179 27 6 2.1143 3.2973 -1.5154 28 9 2.7927 3.9556 -0.5502 29 1 -0.3633 0.6308 -0.8113 30 1 -0.3633 -1.0180 -0.1405 31 1 -0.3634 0.3873 0.9519 32 1 3.7492 0.6918 1.1136 33 1 3.9402 0.6068 -0.6540 34 1 3.9696 2.1846 0.1698 35 1 1.2739 0.5519 2.4073 36 1 1.2694 3.0652 3.6958 37 1 -0.3724 2.7434 3.0882 38 1 -0.4442 -0.2464 3.3828 39 1 -0.9646 -0.3074 5.0841 40 1 -1.6971 0.8726 3.9713 41 1 0.5648 2.9825 6.0000 42 1 -1.1294 2.6540 5.5640 43 1 -0.1003 0.3902 6.9027 44 1 -0.6554 -0.8073 9.9662 45 1 0.6774 0.3057 -2.1261 46 1 0.1724 1.4279 -4.2580 47 1 0.9140 3.7447 -4.6375 48 1 2.1611 4.9415 -2.8846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319197338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:53 Heat of formation + Delta-G solvation = -101.721130 kcal Electronic energy + Delta-G solvation = -30148.868811 eV Core-core repulsion = 25925.346767 eV Total energy + Delta-G solvation = -4223.522044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.79618 -41.97216 -39.89099 -38.55114 -38.21580 -36.02859 -34.10579 -33.87254 -31.97566 -31.68572 -30.61335 -28.03940 -27.39540 -27.22316 -25.52885 -24.37288 -23.74837 -22.92397 -21.62212 -20.97122 -19.41274 -18.84656 -18.70335 -17.75924 -17.18908 -17.04982 -16.72358 -16.57919 -16.47776 -16.14355 -15.88417 -15.78574 -15.45976 -15.38322 -15.13319 -14.75603 -14.44188 -14.25428 -13.94909 -13.66568 -13.60382 -13.54067 -13.35911 -13.27779 -13.08797 -12.97418 -12.84211 -12.74679 -12.44201 -12.21447 -12.16951 -12.08803 -11.99466 -11.72945 -11.67907 -11.36595 -10.97046 -10.61497 -10.15932 -9.92867 -9.59813 -9.00985 -7.96720 -5.25144 0.11828 0.24333 1.37209 1.46937 1.47343 1.57592 1.92250 2.50010 2.55374 2.63425 3.28977 3.36997 3.40256 3.50879 3.67652 3.77972 3.90038 3.92968 4.03729 4.13702 4.31580 4.34976 4.37213 4.42314 4.44437 4.51062 4.54626 4.61692 4.65494 4.71266 4.82629 4.85991 4.90210 4.99967 5.01016 5.09575 5.11306 5.17492 5.26148 5.31964 5.35024 5.43532 5.44391 5.48873 5.77982 5.93107 6.26000 6.40350 7.04711 7.32886 8.07365 8.32066 9.26866 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025501 B = 0.002198 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.745711 B =12734.184682 C =13135.089218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 O -0.358 6.358 3 C 0.154 3.846 4 C -0.139 4.139 5 C 0.489 3.511 6 O -0.555 6.555 7 N -0.706 5.706 8 C 0.139 3.861 9 C -0.094 4.094 10 H 0.077 0.923 11 C -0.134 4.134 12 C 0.158 3.842 13 N -0.741 5.741 14 C -0.246 4.246 15 H 0.073 0.927 16 C -0.074 4.074 17 N -0.967 5.967 18 Si 0.973 3.027 19 H -0.268 1.268 20 H -0.292 1.292 21 H -0.293 1.293 22 C -0.164 4.164 23 C -0.086 4.086 24 C -0.134 4.134 25 C -0.080 4.080 26 C -0.174 4.174 27 C 0.111 3.889 28 F -0.142 7.142 29 H 0.060 0.940 30 H 0.123 0.877 31 H 0.044 0.956 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.414 0.586 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.022 0.978 43 H 0.377 0.623 44 H 0.252 0.748 45 H 0.155 0.845 46 H 0.163 0.837 47 H 0.164 0.836 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 0.634 -31.597 31.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.276 6.276 3 C 0.111 3.889 4 C -0.196 4.196 5 C 0.274 3.726 6 O -0.432 6.432 7 N -0.359 5.359 8 C 0.014 3.986 9 C -0.113 4.113 10 H 0.095 0.905 11 C -0.191 4.191 12 C 0.031 3.969 13 N -0.384 5.384 14 C -0.377 4.377 15 H 0.091 0.909 16 C -0.267 4.267 17 N -0.618 5.618 18 Si 0.802 3.198 19 H -0.193 1.193 20 H -0.219 1.219 21 H -0.220 1.220 22 C -0.165 4.165 23 C -0.103 4.103 24 C -0.151 4.151 25 C -0.098 4.098 26 C -0.193 4.193 27 C 0.091 3.909 28 F -0.120 7.120 29 H 0.079 0.921 30 H 0.141 0.859 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.040 0.960 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.173 0.827 46 H 0.180 0.820 47 H 0.181 0.819 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.608 1.496 -31.519 31.889 hybrid contribution -0.161 0.101 1.746 1.756 sum 4.446 1.596 -29.773 30.146 Atomic orbital electron populations 1.23502 0.79693 1.05425 1.01691 1.88030 1.21234 1.23845 1.94530 1.20362 0.96658 0.83011 0.88891 1.21848 0.88801 1.03831 1.05109 1.21432 0.78069 0.88349 0.84716 1.90746 1.53386 1.16454 1.82654 1.45989 1.63755 1.13316 1.12864 1.21169 0.98468 0.93590 0.85341 1.21328 1.00039 0.96669 0.93261 0.90464 1.21719 0.97871 0.98363 1.01195 1.20702 0.97329 0.92756 0.86116 1.42507 1.81358 1.08251 1.06302 1.19649 1.35940 0.93793 0.88367 0.90911 1.25545 1.03494 0.96104 1.01525 1.69803 1.57027 1.04744 1.30209 0.85084 0.77065 0.77883 0.79787 1.19289 1.21862 1.21974 1.20091 1.04711 0.94180 0.97567 1.21321 0.95506 1.01114 0.92382 1.21584 1.00755 0.95342 0.97469 1.21468 0.94567 0.94646 0.99095 1.21439 1.03027 1.02113 0.92733 1.17783 0.95704 0.90649 0.86744 1.91487 1.77151 1.80758 1.62609 0.92146 0.85872 0.93737 0.89884 0.88693 0.90948 0.74826 0.92223 0.91650 0.90755 0.93691 0.92786 0.96401 0.96021 0.79047 0.93928 0.82709 0.81988 0.81875 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.12 113.37 1.03 0.92 16 2 O -0.36 -6.32 9.08 -148.98 -1.35 -7.67 16 3 C 0.15 3.27 0.81 -12.29 -0.01 3.26 16 4 C -0.14 -2.62 8.64 71.98 0.62 -1.99 16 5 C 0.49 13.02 5.50 87.66 0.48 13.50 16 6 O -0.55 -18.88 13.25 -3.04 -0.04 -18.92 16 7 N -0.71 -16.90 3.99 -463.06 -1.85 -18.74 16 8 C 0.14 3.84 5.06 86.38 0.44 4.27 16 9 C -0.09 -2.86 2.46 -10.79 -0.03 -2.89 16 10 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 11 C -0.13 -3.81 8.94 71.98 0.64 -3.16 16 12 C 0.16 6.32 5.65 86.38 0.49 6.81 16 13 N -0.74 -37.54 5.33 -343.44 -1.83 -39.37 16 14 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 15 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 16 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 17 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 18 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 22 C -0.16 -3.45 4.42 -19.82 -0.09 -3.54 16 23 C -0.09 -1.31 7.70 22.26 0.17 -1.14 16 24 C -0.13 -1.52 10.04 22.27 0.22 -1.30 16 25 C -0.08 -0.97 10.04 22.26 0.22 -0.74 16 26 C -0.17 -3.12 10.03 22.31 0.22 -2.90 16 27 C 0.11 2.63 6.19 22.38 0.14 2.77 16 28 F -0.14 -4.13 12.89 44.97 0.58 -3.55 16 29 H 0.06 0.87 5.13 -2.39 -0.01 0.86 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 0.76 6.22 -2.38 -0.01 0.75 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.54 6.53 -2.39 -0.02 1.52 16 35 H 0.41 8.38 6.78 -92.71 -0.63 7.75 16 36 H 0.06 1.79 8.14 -2.38 -0.02 1.78 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.62 7.18 -2.39 -0.02 1.60 16 39 H 0.04 1.53 7.18 -2.39 -0.02 1.51 16 40 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.38 19.98 6.85 -92.71 -0.63 19.34 16 44 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.16 1.85 5.53 -2.91 -0.02 1.83 16 46 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 47 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 48 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -72.59 383.54 3.42 -69.17 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.27 Total: 32.24 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 5.87 Total: -2.97 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -3.39 Total: -116.77 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.39 Total: -26.59 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.58 Total: -3.55 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.59 3.42 -69.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319197338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.550 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds