Wall clock time and date at job start Tue Mar 31 2020 21:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 5 5 N 1.46500 * 109.47129 * 65.00299 * 4 2 1 6 6 C 1.36935 * 119.99851 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00212 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99736 * 179.97438 * 6 5 4 9 9 N 1.31611 * 120.00112 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99762 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47104 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47611 * 119.99897 * 10 8 6 13 13 H 1.48501 * 109.47222 * 240.00003 * 10 8 6 14 14 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 15 15 N 1.46498 * 109.47059 * 294.99709 * 14 2 1 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.09005 * 109.46522 * 55.00032 * 18 16 15 20 20 C 1.53006 * 109.46946 * 295.00602 * 18 16 15 21 21 O 1.42890 * 109.47324 * 175.00196 * 18 16 15 22 22 C 1.42901 * 113.99978 * 209.99939 * 21 18 16 23 23 C 1.50708 * 109.47256 * 179.97438 * 22 21 18 24 24 C 1.38235 * 119.97358 * 269.73019 * 23 22 21 25 25 C 1.38202 * 120.02629 * 179.72482 * 24 23 22 26 26 C 1.38465 * 119.96994 * 0.56799 * 25 24 23 27 27 F 1.35100 * 120.02538 * 179.68162 * 26 25 24 28 28 C 1.38462 * 119.94696 * 359.70274 * 26 25 24 29 29 C 1.38194 * 119.97524 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 31 31 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 33 33 H 1.09005 * 109.46502 * 184.99774 * 4 2 1 34 34 H 1.08996 * 109.47343 * 304.99842 * 4 2 1 35 35 H 0.97004 * 120.00029 * 359.97438 * 5 4 2 36 36 H 0.97001 * 119.99842 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.47066 * 174.99977 * 14 2 1 38 38 H 1.08994 * 109.46974 * 55.00124 * 14 2 1 39 39 H 0.97001 * 120.00384 * 0.02562 * 15 14 2 40 40 H 1.08993 * 109.46605 * 179.97438 * 20 18 16 41 41 H 1.08997 * 109.46652 * 299.99630 * 20 18 16 42 42 H 1.08994 * 109.47164 * 59.99333 * 20 18 16 43 43 H 1.08996 * 109.47337 * 300.00180 * 22 21 18 44 44 H 1.09003 * 109.46873 * 60.00546 * 22 21 18 45 45 H 1.07998 * 119.99348 * 359.97438 * 24 23 22 46 46 H 1.07998 * 120.01807 * 180.24980 * 25 24 23 47 47 H 1.08002 * 120.01317 * 179.97438 * 28 26 25 48 48 H 1.08002 * 119.98552 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 2.0020 -0.4202 -3.6856 7 1 2.5629 -1.3375 -3.7865 8 6 1.6343 0.2966 -4.8161 9 7 0.9503 1.4142 -4.6931 10 14 2.1104 -0.3253 -6.5120 11 1 2.8713 -1.5936 -6.3785 12 1 0.8837 -0.5656 -7.3136 13 1 2.9553 0.6890 -7.1920 14 6 2.0400 -0.7213 1.2492 15 7 1.6525 0.0353 2.4423 16 6 1.9912 -0.4163 3.6661 17 8 2.6212 -1.4465 3.7795 18 6 1.5872 0.3586 4.8939 19 1 0.5081 0.5129 4.8873 20 6 2.2962 1.7145 4.8973 21 8 1.9564 -0.3750 6.0632 22 6 1.1009 -0.1491 7.1853 23 6 1.5804 -0.9687 8.3556 24 6 1.0976 -2.2500 8.5454 25 6 1.5408 -3.0046 9.6150 26 6 2.4600 -2.4724 10.5034 27 9 2.8892 -3.2068 11.5530 28 6 2.9386 -1.1868 10.3153 29 6 2.4981 -0.4362 9.2418 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2953 35 1 1.1483 0.8592 -2.3518 36 1 0.6930 1.9148 -5.4831 37 1 3.1264 -0.7995 1.2056 38 1 1.6054 -1.7198 1.2950 39 1 1.1483 0.8591 2.3518 40 1 2.0036 2.2751 5.7850 41 1 3.3752 1.5602 4.9038 42 1 2.0146 2.2740 4.0053 43 1 1.1198 0.9082 7.4496 44 1 0.0823 -0.4418 6.9303 45 1 0.3768 -2.6631 7.8554 46 1 1.1666 -4.0071 9.7609 47 1 3.6552 -0.7705 11.0078 48 1 2.8710 0.5667 9.0952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319271880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:11 Heat of formation + Delta-G solvation = -101.181280 kcal Electronic energy + Delta-G solvation = -27734.538644 eV Core-core repulsion = 23511.040009 eV Total energy + Delta-G solvation = -4223.498635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.29773 -40.24110 -39.56968 -37.88558 -36.70510 -34.41996 -33.01942 -32.28826 -31.60267 -30.96901 -29.92075 -26.72120 -26.40458 -25.52117 -23.99361 -23.51761 -22.35500 -21.94485 -20.59718 -19.86938 -18.15443 -17.72310 -17.41082 -16.96594 -16.87864 -16.10511 -15.98974 -15.73905 -15.66597 -15.17034 -14.74312 -14.50105 -14.35078 -14.01678 -13.97837 -13.72026 -13.57470 -13.40705 -13.05100 -12.91121 -12.73055 -12.60287 -12.53057 -12.31241 -12.10415 -11.96700 -11.52318 -11.45846 -11.08489 -10.93768 -10.73308 -10.59002 -10.44389 -10.29425 -10.03336 -9.74733 -9.59745 -9.55241 -9.10131 -9.07092 -8.89656 -6.93820 -5.78878 -3.07083 0.58949 0.78968 2.52651 2.62560 3.14401 3.42554 3.48737 3.50678 3.71488 3.82159 4.21016 4.29429 4.43664 4.49668 4.55480 4.58215 4.63306 4.72695 4.74842 4.91831 5.02118 5.08369 5.18944 5.20873 5.31408 5.35579 5.44201 5.50896 5.56437 5.66327 5.72733 5.76149 5.78385 5.93231 5.96794 6.02905 6.08070 6.20953 6.35854 6.41039 6.43095 6.62157 6.66764 6.75199 6.84634 7.42803 7.69977 8.15184 8.40320 9.51848 10.08912 10.43710 11.44195 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033307 B = 0.001469 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.454849 B =19058.510886 C =19416.958344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.128 3.872 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.520 6.520 18 C 0.070 3.930 19 H 0.087 0.913 20 C -0.171 4.171 21 O -0.349 6.349 22 C 0.100 3.900 23 C -0.099 4.099 24 C -0.065 4.065 25 C -0.156 4.156 26 C 0.103 3.897 27 F -0.140 7.140 28 C -0.158 4.158 29 C -0.068 4.068 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.021 0.979 34 H 0.022 0.978 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 0.102 32.098 32.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.376 5.376 16 C 0.295 3.705 17 O -0.395 6.395 18 C 0.009 3.991 19 H 0.105 0.895 20 C -0.229 4.229 21 O -0.268 6.268 22 C 0.024 3.976 23 C -0.100 4.100 24 C -0.084 4.084 25 C -0.175 4.175 26 C 0.084 3.916 27 F -0.118 7.118 28 C -0.176 4.176 29 C -0.086 4.086 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.486 -0.933 32.095 32.143 hybrid contribution -0.292 0.418 -0.842 0.984 sum -1.778 -0.515 31.254 31.308 Atomic orbital electron populations 1.21795 0.94674 1.01961 1.01458 1.21555 0.96695 1.00517 0.94162 0.90489 1.20580 0.96661 0.94220 0.85357 1.42338 1.66904 1.27690 1.00588 1.19296 1.28572 1.05452 0.83656 0.91076 1.24728 1.01016 0.97408 0.97855 1.69661 1.43625 1.16664 1.28367 0.86112 0.77594 0.77858 0.84612 1.20531 1.21882 1.21881 1.21430 1.00254 0.95238 0.82653 1.45993 1.58075 1.27948 1.05613 1.20296 0.80232 0.85765 0.84224 1.90739 1.38516 1.23858 1.86379 1.21923 0.99844 0.91711 0.85629 0.89526 1.22243 1.02575 0.94850 1.03234 1.88146 1.52531 1.67497 1.18587 1.21407 0.93434 0.98070 0.84696 1.19603 0.98989 0.95309 0.96076 1.20969 0.98608 0.92757 0.96019 1.21169 0.99014 1.01557 0.95765 1.17795 0.97066 0.90416 0.86324 1.91510 1.88529 1.76799 1.54999 1.21147 1.02707 0.93375 1.00413 1.20932 0.94738 1.00082 0.92821 0.91123 0.92798 0.93956 0.96084 0.95972 0.78227 0.93595 0.91256 0.91283 0.76565 0.91231 0.90908 0.90661 0.91890 0.91937 0.84692 0.84459 0.84512 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.65 16 2 C -0.11 -1.62 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 5 N -0.73 -18.02 5.33 -59.91 -0.32 -18.34 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 10 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 14 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 15 N -0.72 -7.87 5.25 -60.30 -0.32 -8.18 16 16 C 0.51 6.35 7.18 -10.98 -0.08 6.27 16 17 O -0.52 -9.00 16.51 -14.31 -0.24 -9.23 16 18 C 0.07 0.61 3.13 -27.88 -0.09 0.52 16 19 H 0.09 0.51 7.79 -51.93 -0.40 0.11 16 20 C -0.17 -1.14 9.48 37.16 0.35 -0.79 16 21 O -0.35 -3.67 9.51 -55.09 -0.52 -4.19 16 22 C 0.10 0.69 5.87 36.01 0.21 0.90 16 23 C -0.10 -0.77 5.51 -104.62 -0.58 -1.35 16 24 C -0.07 -0.50 9.70 -39.60 -0.38 -0.88 16 25 C -0.16 -1.21 10.03 -39.51 -0.40 -1.60 16 26 C 0.10 0.87 7.30 -39.42 -0.29 0.58 16 27 F -0.14 -1.29 17.27 2.25 0.04 -1.26 16 28 C -0.16 -1.15 10.03 -39.51 -0.40 -1.55 16 29 C -0.07 -0.47 9.70 -39.60 -0.38 -0.86 16 30 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 9.81 6.85 -40.82 -0.28 9.53 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.40 3.27 7.44 -40.82 -0.30 2.97 16 40 H 0.07 0.34 7.87 -51.93 -0.41 -0.07 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.41 7.92 -51.93 -0.41 -0.01 16 43 H 0.06 0.30 7.81 -51.93 -0.41 -0.11 16 44 H 0.06 0.34 8.03 -51.93 -0.42 -0.07 16 45 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -34.75 406.75 -9.31 -44.06 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.57 Total: 5.60 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.21 Total: -4.75 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.09 Total: -53.64 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.76 Total: -13.42 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.75 -9.31 -44.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319271880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.124 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds