Wall clock time and date at job start Tue Mar 31 2020 21:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 5 5 N 1.46500 * 109.47129 * 65.00299 * 4 2 1 6 6 C 1.36935 * 119.99851 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00212 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99736 * 179.97438 * 6 5 4 9 9 N 1.31611 * 120.00112 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99762 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47104 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47611 * 119.99897 * 10 8 6 13 13 H 1.48501 * 109.47222 * 240.00003 * 10 8 6 14 14 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 15 15 N 1.46498 * 109.47059 * 294.99709 * 14 2 1 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 2 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 14 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 14 19 19 H 1.09005 * 109.46522 * 55.00032 * 18 16 15 20 20 C 1.53006 * 109.46946 * 295.00602 * 18 16 15 21 21 O 1.42890 * 109.47324 * 175.00196 * 18 16 15 22 22 C 1.42901 * 113.99978 * 209.99939 * 21 18 16 23 23 C 1.50708 * 109.47256 * 179.97438 * 22 21 18 24 24 C 1.38235 * 119.97358 * 269.73019 * 23 22 21 25 25 C 1.38202 * 120.02629 * 179.72482 * 24 23 22 26 26 C 1.38465 * 119.96994 * 0.56799 * 25 24 23 27 27 F 1.35100 * 120.02538 * 179.68162 * 26 25 24 28 28 C 1.38462 * 119.94696 * 359.70274 * 26 25 24 29 29 C 1.38194 * 119.97524 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 31 31 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 33 33 H 1.09005 * 109.46502 * 184.99774 * 4 2 1 34 34 H 1.08996 * 109.47343 * 304.99842 * 4 2 1 35 35 H 0.97004 * 120.00029 * 359.97438 * 5 4 2 36 36 H 0.97001 * 119.99842 * 180.02562 * 9 8 6 37 37 H 1.09004 * 109.47066 * 174.99977 * 14 2 1 38 38 H 1.08994 * 109.46974 * 55.00124 * 14 2 1 39 39 H 0.97001 * 120.00384 * 0.02562 * 15 14 2 40 40 H 1.08993 * 109.46605 * 179.97438 * 20 18 16 41 41 H 1.08997 * 109.46652 * 299.99630 * 20 18 16 42 42 H 1.08994 * 109.47164 * 59.99333 * 20 18 16 43 43 H 1.08996 * 109.47337 * 300.00180 * 22 21 18 44 44 H 1.09003 * 109.46873 * 60.00546 * 22 21 18 45 45 H 1.07998 * 119.99348 * 359.97438 * 24 23 22 46 46 H 1.07998 * 120.01807 * 180.24980 * 25 24 23 47 47 H 1.08002 * 120.01317 * 179.97438 * 28 26 25 48 48 H 1.08002 * 119.98552 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 2.0020 -0.4202 -3.6856 7 1 2.5629 -1.3375 -3.7865 8 6 1.6343 0.2966 -4.8161 9 7 0.9503 1.4142 -4.6931 10 14 2.1104 -0.3253 -6.5120 11 1 2.8713 -1.5936 -6.3785 12 1 0.8837 -0.5656 -7.3136 13 1 2.9553 0.6890 -7.1920 14 6 2.0400 -0.7213 1.2492 15 7 1.6525 0.0353 2.4423 16 6 1.9912 -0.4163 3.6661 17 8 2.6212 -1.4465 3.7795 18 6 1.5872 0.3586 4.8939 19 1 0.5081 0.5129 4.8873 20 6 2.2962 1.7145 4.8973 21 8 1.9564 -0.3750 6.0632 22 6 1.1009 -0.1491 7.1853 23 6 1.5804 -0.9687 8.3556 24 6 1.0976 -2.2500 8.5454 25 6 1.5408 -3.0046 9.6150 26 6 2.4600 -2.4724 10.5034 27 9 2.8892 -3.2068 11.5530 28 6 2.9386 -1.1868 10.3153 29 6 2.4981 -0.4362 9.2418 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.1264 -0.7994 -1.2056 34 1 1.6054 -1.7198 -1.2953 35 1 1.1483 0.8592 -2.3518 36 1 0.6930 1.9148 -5.4831 37 1 3.1264 -0.7995 1.2056 38 1 1.6054 -1.7198 1.2950 39 1 1.1483 0.8591 2.3518 40 1 2.0036 2.2751 5.7850 41 1 3.3752 1.5602 4.9038 42 1 2.0146 2.2740 4.0053 43 1 1.1198 0.9082 7.4496 44 1 0.0823 -0.4418 6.9303 45 1 0.3768 -2.6631 7.8554 46 1 1.1666 -4.0071 9.7609 47 1 3.6552 -0.7705 11.0078 48 1 2.8710 0.5667 9.0952 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319271880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:10 Heat of formation + Delta-G solvation = -122.858089 kcal Electronic energy + Delta-G solvation = -27735.478621 eV Core-core repulsion = 23511.040009 eV Total energy + Delta-G solvation = -4224.438612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.94917 -41.09552 -40.19751 -38.69694 -37.96954 -35.96004 -34.28506 -33.21856 -32.13069 -32.04213 -31.26120 -27.81414 -27.20972 -26.90402 -25.08512 -24.06239 -23.90403 -22.49086 -21.62513 -21.09985 -19.25641 -18.73478 -18.28469 -18.08985 -17.50092 -16.96953 -16.82296 -16.63007 -16.54605 -16.28143 -15.95760 -15.50570 -15.40010 -15.30084 -15.00617 -14.58848 -14.50690 -14.35658 -14.09289 -13.98271 -13.63339 -13.56327 -13.32363 -13.25472 -13.09379 -12.95368 -12.82859 -12.57514 -12.18212 -12.12596 -12.07422 -11.98987 -11.97483 -11.68236 -11.64525 -11.00223 -10.94863 -10.47853 -10.10295 -10.08979 -9.68646 -8.98482 -7.95414 -5.23182 0.01457 0.25482 1.48321 1.48555 1.58704 1.59802 1.85845 2.49076 2.57357 3.11627 3.25278 3.38657 3.66305 3.72011 3.74177 3.84212 3.95106 3.97302 4.00638 4.08632 4.13738 4.21099 4.27214 4.36061 4.48125 4.56280 4.60393 4.71498 4.75770 4.78021 4.86936 4.94994 4.95714 4.97760 5.06770 5.12267 5.14274 5.21715 5.26091 5.34115 5.41933 5.50114 5.50304 5.51599 5.87396 6.08873 6.27758 6.58298 7.24999 7.34845 8.09896 8.34599 9.28103 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033307 B = 0.001469 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.454849 B =19058.510886 C =19416.958344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.082 0.918 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.247 4.247 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.971 3.029 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.139 3.861 15 N -0.708 5.708 16 C 0.506 3.494 17 O -0.577 6.577 18 C 0.075 3.925 19 H 0.123 0.877 20 C -0.167 4.167 21 O -0.382 6.382 22 C 0.097 3.903 23 C -0.111 4.111 24 C -0.077 4.077 25 C -0.165 4.165 26 C 0.081 3.919 27 F -0.150 7.150 28 C -0.162 4.162 29 C -0.071 4.071 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.417 0.583 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.152 0.848 48 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 1.230 32.991 33.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.100 0.900 4 C 0.028 3.972 5 N -0.383 5.383 6 C -0.379 4.379 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.220 1.220 14 C 0.014 3.986 15 N -0.362 5.362 16 C 0.293 3.707 17 O -0.456 6.456 18 C 0.014 3.986 19 H 0.140 0.860 20 C -0.225 4.225 21 O -0.302 6.302 22 C 0.021 3.979 23 C -0.111 4.111 24 C -0.095 4.095 25 C -0.183 4.183 26 C 0.062 3.938 27 F -0.128 7.128 28 C -0.180 4.180 29 C -0.089 4.089 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.254 0.746 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.163 0.837 46 H 0.165 0.835 47 H 0.170 0.830 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.162 0.207 33.014 33.085 hybrid contribution -0.071 0.033 -1.064 1.067 sum -2.233 0.240 31.950 32.029 Atomic orbital electron populations 1.21736 0.93704 1.01920 1.01945 1.21326 0.97275 1.00113 0.92473 0.90003 1.20736 0.96481 0.94161 0.85818 1.42488 1.66755 1.27835 1.01259 1.19666 1.27820 1.05303 0.85142 0.90967 1.25501 1.01671 0.97892 1.01361 1.69796 1.45033 1.17846 1.29012 0.85110 0.77106 0.77586 0.80172 1.19374 1.21935 1.21962 1.21111 0.99408 0.95037 0.83010 1.45807 1.57675 1.28150 1.04618 1.21126 0.78956 0.85192 0.85432 1.90715 1.41142 1.26513 1.87193 1.22012 1.01963 0.91286 0.83309 0.85959 1.22255 1.01023 0.93938 1.05262 1.88106 1.53917 1.68424 1.19725 1.21613 0.93478 0.99461 0.83301 1.19893 0.99080 0.95501 0.96620 1.21195 0.99022 0.93088 0.96161 1.21361 0.98976 1.02200 0.95794 1.18077 0.98016 0.91141 0.86614 1.91479 1.88748 1.77122 1.55478 1.21400 1.02788 0.92991 1.00865 1.21227 0.94325 1.00995 0.92327 0.93863 0.93124 0.90152 0.96411 0.96225 0.78994 0.93957 0.92455 0.92009 0.74570 0.88725 0.93021 0.89127 0.89228 0.90464 0.83701 0.83493 0.82993 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 8.94 71.98 0.64 -2.93 16 2 C -0.09 -2.63 2.46 -10.79 -0.03 -2.66 16 3 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.16 6.03 5.65 86.38 0.49 6.52 16 5 N -0.74 -36.67 5.33 -343.44 -1.83 -38.50 16 6 C -0.25 -13.78 9.99 84.03 0.84 -12.94 16 7 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 8 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 9 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 10 Si 0.97 45.90 29.55 68.60 2.03 47.92 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 14 C 0.14 3.56 5.06 86.38 0.44 3.99 16 15 N -0.71 -13.86 5.25 -463.07 -2.43 -16.29 16 16 C 0.51 11.79 7.18 87.66 0.63 12.42 16 17 O -0.58 -19.94 16.51 15.95 0.26 -19.68 16 18 C 0.08 1.08 3.13 29.85 0.09 1.18 16 19 H 0.12 0.88 7.79 -2.38 -0.02 0.87 16 20 C -0.17 -1.67 9.48 71.98 0.68 -0.99 16 21 O -0.38 -7.23 9.51 -129.99 -1.24 -8.47 16 22 C 0.10 1.06 5.87 71.24 0.42 1.48 16 23 C -0.11 -1.54 5.51 -19.86 -0.11 -1.65 16 24 C -0.08 -1.11 9.70 22.26 0.22 -0.90 16 25 C -0.16 -2.52 10.03 22.32 0.22 -2.30 16 26 C 0.08 1.36 7.30 22.38 0.16 1.52 16 27 F -0.15 -2.82 17.27 44.97 0.78 -2.04 16 28 C -0.16 -2.23 10.03 22.31 0.22 -2.01 16 29 C -0.07 -0.88 9.70 22.26 0.22 -0.66 16 30 H 0.04 1.40 7.18 -2.39 -0.02 1.38 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.49 7.18 -2.39 -0.02 1.47 16 33 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.38 19.47 6.85 -92.71 -0.63 18.83 16 36 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.42 5.35 7.44 -92.71 -0.69 4.66 16 40 H 0.09 0.50 7.87 -2.39 -0.02 0.48 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.62 7.92 -2.39 -0.02 0.60 16 43 H 0.09 0.48 7.81 -2.39 -0.02 0.46 16 44 H 0.08 0.60 8.03 -2.39 -0.02 0.58 16 45 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 47 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 48 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -76.74 406.75 3.10 -73.64 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.36 Total: 24.64 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.61 Total: -3.53 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.98 Total: -112.49 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.97 Total: -28.14 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -76.74 3.10 -73.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319271880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.218 kcal (2) G-P(sol) polarization free energy of solvation -76.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds