Wall clock time and date at job start Tue Mar 31 2020 21:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.47287 * 55.00109 * 18 16 15 20 20 C 1.52996 * 109.47123 * 295.00226 * 18 16 15 21 21 O 1.42899 * 109.47221 * 175.00179 * 18 16 15 22 22 C 1.42904 * 113.99854 * 210.00050 * 21 18 16 23 23 C 1.50699 * 109.47006 * 179.97438 * 22 21 18 24 24 C 1.38245 * 119.97954 * 269.72974 * 23 22 21 25 25 C 1.38198 * 120.03037 * 179.72682 * 24 23 22 26 26 C 1.38454 * 119.96897 * 0.56813 * 25 24 23 27 27 F 1.35103 * 120.02211 * 179.68464 * 26 25 24 28 28 C 1.38459 * 119.95284 * 359.70093 * 26 25 24 29 29 C 1.38197 * 119.97116 * 0.02562 * 28 26 25 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 32 32 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 33 33 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 34 34 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 38 38 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 39 39 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 40 40 H 1.08998 * 109.47329 * 59.99544 * 20 18 16 41 41 H 1.08997 * 109.47363 * 180.02562 * 20 18 16 42 42 H 1.09003 * 109.46950 * 299.99545 * 20 18 16 43 43 H 1.08997 * 109.47247 * 299.99547 * 22 21 18 44 44 H 1.08998 * 109.46902 * 60.00198 * 22 21 18 45 45 H 1.08006 * 119.97990 * 359.97438 * 24 23 22 46 46 H 1.08001 * 120.01320 * 180.24925 * 25 24 23 47 47 H 1.08001 * 120.01455 * 179.97438 * 28 26 25 48 48 H 1.08006 * 119.98498 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 1 1.9562 1.3906 -4.8061 20 6 0.0728 0.3676 -5.0221 21 8 2.1721 -0.2439 -6.0512 22 6 2.4575 0.6733 -7.1092 23 6 3.0577 -0.0730 -8.2727 24 6 4.4283 -0.2316 -8.3587 25 6 4.9795 -0.9207 -9.4223 26 6 4.1591 -1.4422 -10.4082 27 9 4.6973 -2.1105 -11.4517 28 6 2.7869 -1.2780 -10.3240 29 6 2.2377 -0.5934 -9.2565 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2950 35 1 1.1483 0.8591 2.3518 36 1 0.6807 1.9070 5.4838 37 1 3.1264 -0.7994 -1.2056 38 1 1.6054 -1.7198 -1.2953 39 1 1.1483 0.8592 -2.3518 40 1 -0.3657 0.8321 -4.1389 41 1 -0.2159 0.9300 -5.9100 42 1 -0.2862 -0.6579 -5.1094 43 1 1.5355 1.1604 -7.4263 44 1 3.1635 1.4255 -6.7574 45 1 5.0684 0.1799 -7.5921 46 1 6.0500 -1.0478 -9.4871 47 1 2.1461 -1.6841 -11.0927 48 1 1.1673 -0.4649 -9.1908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319271885.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:20 Heat of formation + Delta-G solvation = -101.199016 kcal Electronic energy + Delta-G solvation = -27738.635553 eV Core-core repulsion = 23515.136149 eV Total energy + Delta-G solvation = -4223.499404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.29549 -40.24125 -39.56873 -37.88389 -36.70470 -34.42011 -33.01668 -32.28909 -31.60060 -30.97014 -29.92528 -26.70125 -26.40775 -25.52994 -23.99992 -23.51587 -22.35183 -21.94263 -20.60591 -19.85124 -18.15453 -17.73886 -17.39963 -16.96555 -16.88276 -16.10366 -15.98731 -15.87850 -15.49647 -15.08047 -14.86351 -14.52884 -14.36500 -14.00977 -13.93230 -13.70943 -13.57548 -13.40468 -13.12104 -12.81472 -12.72146 -12.60856 -12.60191 -12.31020 -12.07059 -11.96976 -11.52814 -11.45838 -11.08371 -10.93783 -10.73118 -10.59089 -10.44050 -10.29540 -10.03358 -9.74777 -9.59730 -9.55068 -9.09974 -9.07126 -8.89649 -6.93795 -5.78923 -3.07175 0.59121 0.79155 2.52606 2.62703 3.14538 3.42504 3.48679 3.50639 3.71518 3.82337 4.21193 4.29559 4.43733 4.49685 4.55338 4.58158 4.63622 4.72758 4.75034 4.92015 5.02141 5.08587 5.18571 5.20245 5.30955 5.35904 5.44398 5.51071 5.56381 5.66495 5.71834 5.76312 5.78791 5.93735 5.96611 6.03110 6.08074 6.21163 6.36237 6.41207 6.43174 6.62322 6.66748 6.75230 6.84714 7.42800 7.69874 8.15192 8.40332 9.51797 10.08856 10.43630 11.44143 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030835 B = 0.001481 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.831696 B =18906.818853 C =19431.159256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.128 3.872 15 N -0.723 5.723 16 C 0.511 3.489 17 O -0.520 6.520 18 C 0.070 3.930 19 H 0.087 0.913 20 C -0.171 4.171 21 O -0.349 6.349 22 C 0.100 3.900 23 C -0.099 4.099 24 C -0.065 4.065 25 C -0.156 4.156 26 C 0.103 3.897 27 F -0.140 7.140 28 C -0.158 4.158 29 C -0.068 4.068 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.484 1.732 -31.949 31.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.004 3.996 15 N -0.376 5.376 16 C 0.295 3.705 17 O -0.395 6.395 18 C 0.009 3.991 19 H 0.105 0.895 20 C -0.229 4.229 21 O -0.268 6.268 22 C 0.024 3.976 23 C -0.100 4.100 24 C -0.083 4.083 25 C -0.175 4.175 26 C 0.084 3.916 27 F -0.118 7.118 28 C -0.177 4.177 29 C -0.086 4.086 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.153 0.847 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.090 0.628 -31.953 31.978 hybrid contribution -0.135 0.513 0.851 1.003 sum 0.955 1.140 -31.102 31.138 Atomic orbital electron populations 1.21794 0.94647 1.01980 1.01456 1.21555 0.96723 1.00491 0.94158 0.90513 1.20578 0.96655 0.94224 0.85360 1.42340 1.67046 1.27568 1.00568 1.19298 1.28560 1.05478 0.83630 0.91077 1.24731 1.01004 0.97430 0.97855 1.69667 1.43577 1.16728 1.28354 0.86109 0.77581 0.77864 0.84609 1.20532 1.21885 1.21877 1.21433 1.00210 0.95284 0.82652 1.45993 1.57956 1.28054 1.05625 1.20293 0.79952 0.86086 0.84184 1.90739 1.38585 1.23809 1.86361 1.21922 0.94663 0.96734 0.85804 0.89505 1.22240 0.93409 1.04028 1.03192 1.88148 1.82221 1.33149 1.23249 1.21406 0.99125 0.91038 0.86042 1.19604 0.93599 1.01079 0.95695 1.20976 0.94520 0.96197 0.96655 1.21167 1.00700 1.00846 0.94783 1.17792 0.91996 0.95732 0.86080 1.91511 1.86589 1.78083 1.55659 1.21145 0.93266 1.02520 1.00720 1.20931 1.00175 0.95010 0.92466 0.92783 0.91130 0.93944 0.96095 0.95965 0.78226 0.93597 0.91283 0.91256 0.76565 0.90680 0.91232 0.90935 0.91893 0.91918 0.84679 0.84453 0.84516 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.65 16 2 C -0.11 -1.62 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.16 3.12 5.65 -4.04 -0.02 3.09 16 5 N -0.73 -18.02 5.33 -59.91 -0.32 -18.34 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 10 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 15 N -0.72 -7.87 5.25 -60.29 -0.32 -8.18 16 16 C 0.51 6.35 7.18 -10.99 -0.08 6.27 16 17 O -0.52 -9.00 16.51 -14.30 -0.24 -9.23 16 18 C 0.07 0.61 3.13 -27.88 -0.09 0.52 16 19 H 0.09 0.52 7.79 -51.93 -0.40 0.11 16 20 C -0.17 -1.12 9.48 37.16 0.35 -0.77 16 21 O -0.35 -3.67 9.51 -55.09 -0.52 -4.19 16 22 C 0.10 0.69 5.87 36.00 0.21 0.91 16 23 C -0.10 -0.77 5.51 -104.62 -0.58 -1.35 16 24 C -0.07 -0.50 9.70 -39.59 -0.38 -0.89 16 25 C -0.16 -1.21 10.03 -39.52 -0.40 -1.61 16 26 C 0.10 0.87 7.30 -39.42 -0.29 0.59 16 27 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 28 C -0.16 -1.15 10.03 -39.51 -0.40 -1.55 16 29 C -0.07 -0.47 9.70 -39.59 -0.38 -0.86 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 32 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.38 9.81 6.85 -40.82 -0.28 9.53 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 3.27 7.44 -40.82 -0.30 2.97 16 40 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 41 H 0.07 0.33 7.87 -51.93 -0.41 -0.08 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.30 7.81 -51.93 -0.41 -0.11 16 44 H 0.06 0.35 8.03 -51.93 -0.42 -0.07 16 45 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 47 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -34.75 406.75 -9.31 -44.05 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.57 Total: 5.60 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.21 Total: -4.74 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.09 Total: -53.64 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.76 Total: -13.42 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.75 -9.31 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319271885.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.145 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds