Wall clock time and date at job start Tue Mar 31 2020 21:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21282 * 119.99801 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00222 * 179.97438 * 16 15 14 19 19 H 1.09001 * 109.47287 * 55.00109 * 18 16 15 20 20 C 1.52996 * 109.47123 * 295.00226 * 18 16 15 21 21 O 1.42899 * 109.47221 * 175.00179 * 18 16 15 22 22 C 1.42904 * 113.99854 * 210.00050 * 21 18 16 23 23 C 1.50699 * 109.47006 * 179.97438 * 22 21 18 24 24 C 1.38245 * 119.97954 * 269.72974 * 23 22 21 25 25 C 1.38198 * 120.03037 * 179.72682 * 24 23 22 26 26 C 1.38454 * 119.96897 * 0.56813 * 25 24 23 27 27 F 1.35103 * 120.02211 * 179.68464 * 26 25 24 28 28 C 1.38459 * 119.95284 * 359.70093 * 26 25 24 29 29 C 1.38197 * 119.97116 * 0.02562 * 28 26 25 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 32 32 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 33 33 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 34 34 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 35 35 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 36 36 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 37 37 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 38 38 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 39 39 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 40 40 H 1.08998 * 109.47329 * 59.99544 * 20 18 16 41 41 H 1.08997 * 109.47363 * 180.02562 * 20 18 16 42 42 H 1.09003 * 109.46950 * 299.99545 * 20 18 16 43 43 H 1.08997 * 109.47247 * 299.99547 * 22 21 18 44 44 H 1.08998 * 109.46902 * 60.00198 * 22 21 18 45 45 H 1.08006 * 119.97990 * 359.97438 * 24 23 22 46 46 H 1.08001 * 120.01320 * 180.24925 * 25 24 23 47 47 H 1.08001 * 120.01455 * 179.97438 * 28 26 25 48 48 H 1.08006 * 119.98498 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6272 -1.4426 -3.7792 18 6 1.5973 0.3651 -4.8933 19 1 1.9562 1.3906 -4.8061 20 6 0.0728 0.3676 -5.0221 21 8 2.1721 -0.2439 -6.0512 22 6 2.4575 0.6733 -7.1092 23 6 3.0577 -0.0730 -8.2727 24 6 4.4283 -0.2316 -8.3587 25 6 4.9795 -0.9207 -9.4223 26 6 4.1591 -1.4422 -10.4082 27 9 4.6973 -2.1105 -11.4517 28 6 2.7869 -1.2780 -10.3240 29 6 2.2377 -0.5934 -9.2565 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7995 1.2056 34 1 1.6054 -1.7198 1.2950 35 1 1.1483 0.8591 2.3518 36 1 0.6807 1.9070 5.4838 37 1 3.1264 -0.7994 -1.2056 38 1 1.6054 -1.7198 -1.2953 39 1 1.1483 0.8592 -2.3518 40 1 -0.3657 0.8321 -4.1389 41 1 -0.2159 0.9300 -5.9100 42 1 -0.2862 -0.6579 -5.1094 43 1 1.5355 1.1604 -7.4263 44 1 3.1635 1.4255 -6.7574 45 1 5.0684 0.1799 -7.5921 46 1 6.0500 -1.0478 -9.4871 47 1 2.1461 -1.6841 -11.0927 48 1 1.1673 -0.4649 -9.1908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319271885.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:19 Heat of formation + Delta-G solvation = -122.871430 kcal Electronic energy + Delta-G solvation = -27739.575339 eV Core-core repulsion = 23515.136149 eV Total energy + Delta-G solvation = -4224.439190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.94904 -41.09634 -40.19882 -38.69584 -37.97003 -35.95993 -34.28224 -33.21941 -32.13162 -32.03900 -31.26783 -27.79937 -27.21453 -26.90549 -25.09346 -24.06315 -23.90048 -22.49188 -21.63554 -21.08104 -19.25729 -18.73685 -18.30853 -18.06974 -17.50866 -17.04449 -16.73919 -16.63778 -16.55678 -16.20387 -15.97687 -15.58127 -15.45125 -15.23129 -14.96529 -14.66231 -14.50687 -14.31568 -14.07659 -13.97017 -13.67961 -13.55092 -13.31573 -13.25370 -13.08726 -12.94896 -12.82610 -12.57546 -12.18632 -12.12855 -12.07152 -11.98866 -11.97697 -11.67992 -11.64529 -11.00390 -10.94824 -10.47829 -10.10349 -10.09087 -9.68763 -8.98436 -7.95438 -5.23252 0.01351 0.25375 1.48333 1.48525 1.58717 1.59855 1.85809 2.49002 2.57348 3.11527 3.25190 3.38614 3.66181 3.71868 3.74244 3.84157 3.95017 3.97440 4.00496 4.09716 4.12954 4.20995 4.27087 4.36036 4.48015 4.56311 4.60258 4.71798 4.76214 4.78209 4.87296 4.94840 4.95780 4.97669 5.07025 5.12159 5.14267 5.21614 5.26701 5.33995 5.41956 5.50002 5.50270 5.51581 5.87285 6.08674 6.27792 6.58253 7.24982 7.34820 8.09865 8.34543 9.28074 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030835 B = 0.001481 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.831696 B =18906.818853 C =19431.159256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 H 0.082 0.918 4 C 0.155 3.845 5 N -0.740 5.740 6 C -0.247 4.247 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.971 3.029 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.139 3.861 15 N -0.708 5.708 16 C 0.506 3.494 17 O -0.577 6.577 18 C 0.075 3.925 19 H 0.121 0.879 20 C -0.167 4.167 21 O -0.382 6.382 22 C 0.097 3.903 23 C -0.111 4.111 24 C -0.077 4.077 25 C -0.165 4.165 26 C 0.081 3.919 27 F -0.149 7.149 28 C -0.162 4.162 29 C -0.070 4.070 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.417 0.583 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.145 0.855 46 H 0.147 0.853 47 H 0.153 0.847 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 2.761 -32.863 32.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 H 0.100 0.900 4 C 0.028 3.972 5 N -0.383 5.383 6 C -0.379 4.379 7 H 0.090 0.910 8 C -0.264 4.264 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.194 1.194 12 H -0.220 1.220 13 H -0.219 1.219 14 C 0.014 3.986 15 N -0.362 5.362 16 C 0.293 3.707 17 O -0.456 6.456 18 C 0.014 3.986 19 H 0.139 0.861 20 C -0.224 4.224 21 O -0.302 6.302 22 C 0.021 3.979 23 C -0.111 4.111 24 C -0.095 4.095 25 C -0.183 4.183 26 C 0.062 3.938 27 F -0.128 7.128 28 C -0.180 4.180 29 C -0.088 4.088 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.210 0.790 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.254 0.746 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.162 0.838 46 H 0.165 0.835 47 H 0.170 0.830 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.235 1.670 -32.892 32.936 hybrid contribution 0.152 0.164 1.081 1.104 sum 0.387 1.834 -31.812 31.867 Atomic orbital electron populations 1.21736 0.93727 1.01897 1.01951 1.21326 0.97264 1.00119 0.92471 0.89968 1.20733 0.96504 0.94138 0.85817 1.42490 1.66895 1.27716 1.01238 1.19668 1.27809 1.05328 0.85117 0.90965 1.25504 1.01652 0.97919 1.01363 1.69802 1.44983 1.17915 1.28998 0.85107 0.77098 0.77590 0.80165 1.19373 1.21951 1.21947 1.21114 0.99432 0.95017 0.83007 1.45807 1.57571 1.28244 1.04627 1.21123 0.78640 0.85555 0.85385 1.90715 1.41230 1.26452 1.87171 1.22016 0.95960 0.97133 0.83516 0.86115 1.22252 0.91517 1.03426 1.05218 1.88107 1.82678 1.35099 1.24282 1.21609 1.00755 0.90597 0.84890 1.19892 0.93732 1.01170 0.96298 1.21196 0.95091 0.96377 0.96849 1.21354 1.01354 1.00839 0.94794 1.18073 0.92828 0.96605 0.86329 1.91481 1.86804 1.78424 1.56115 1.21402 0.93001 1.02305 1.01305 1.21229 1.01310 0.94355 0.91942 0.93180 0.93862 0.90132 0.96359 0.96276 0.78993 0.93960 0.92348 0.92115 0.74570 0.89026 0.88766 0.92913 0.89180 0.90563 0.83771 0.83521 0.82952 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.94 71.98 0.64 -2.95 16 2 C -0.09 -2.63 2.46 -10.79 -0.03 -2.65 16 3 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.16 6.03 5.65 86.38 0.49 6.51 16 5 N -0.74 -36.67 5.33 -343.46 -1.83 -38.50 16 6 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 7 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 8 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 9 N -0.97 -57.97 13.06 21.65 0.28 -57.69 16 10 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 14 C 0.14 3.56 5.06 86.38 0.44 3.99 16 15 N -0.71 -13.87 5.25 -463.06 -2.43 -16.29 16 16 C 0.51 11.79 7.18 87.66 0.63 12.42 16 17 O -0.58 -19.95 16.51 15.95 0.26 -19.69 16 18 C 0.07 1.08 3.13 29.85 0.09 1.17 16 19 H 0.12 0.92 7.79 -2.39 -0.02 0.90 16 20 C -0.17 -1.59 9.48 71.98 0.68 -0.91 16 21 O -0.38 -7.25 9.51 -129.99 -1.24 -8.48 16 22 C 0.10 1.08 5.87 71.24 0.42 1.50 16 23 C -0.11 -1.55 5.51 -19.86 -0.11 -1.66 16 24 C -0.08 -1.14 9.70 22.26 0.22 -0.92 16 25 C -0.16 -2.55 10.03 22.31 0.22 -2.33 16 26 C 0.08 1.37 7.30 22.37 0.16 1.53 16 27 F -0.15 -2.82 17.27 44.97 0.78 -2.05 16 28 C -0.16 -2.22 10.03 22.31 0.22 -1.99 16 29 C -0.07 -0.87 9.70 22.26 0.22 -0.65 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.40 7.18 -2.39 -0.02 1.38 16 32 H 0.08 1.50 7.18 -2.39 -0.02 1.48 16 33 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.38 19.46 6.85 -92.71 -0.63 18.83 16 36 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.42 5.35 7.44 -92.71 -0.69 4.66 16 40 H 0.09 0.57 7.92 -2.39 -0.02 0.55 16 41 H 0.09 0.47 7.87 -2.39 -0.02 0.45 16 42 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 43 H 0.09 0.49 7.81 -2.39 -0.02 0.47 16 44 H 0.08 0.62 8.03 -2.39 -0.02 0.60 16 45 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 46 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 47 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 48 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -76.73 406.75 3.10 -73.62 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.36 Total: 24.66 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.61 Total: -3.50 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.98 Total: -112.48 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.97 Total: -28.17 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -76.73 3.10 -73.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319271885.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.249 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds