Wall clock time and date at job start Tue Mar 31 2020 21:18:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09003 * 109.46928 * 2 1
4 4 O 1.42894 * 109.46954 * 239.99751 * 2 1 3
5 5 C 1.42904 * 113.99726 * 90.00387 * 4 2 1
6 6 C 1.50699 * 109.47135 * 179.97438 * 5 4 2
7 7 C 1.38245 * 119.97423 * 269.72719 * 6 5 4
8 8 C 1.38206 * 120.02806 * 179.72504 * 7 6 5
9 9 C 1.38456 * 119.96864 * 0.56837 * 8 7 6
10 10 F 1.35107 * 120.02397 * 179.68227 * 9 8 7
11 11 C 1.38457 * 119.95214 * 359.70376 * 9 8 7
12 12 C 1.38192 * 119.97521 * 0.02562 * 11 9 8
13 13 C 1.50700 * 109.46820 * 119.99775 * 2 1 3
14 14 O 1.21287 * 119.99517 * 114.99825 * 13 2 1
15 15 N 1.34769 * 120.00645 * 294.99835 * 13 2 1
16 16 C 1.46502 * 119.99374 * 0.02562 * 15 13 2
17 17 C 1.46490 * 120.00481 * 180.02562 * 15 13 2
18 18 C 1.52995 * 109.47246 * 90.00029 * 17 15 13
19 19 N 1.46500 * 109.47357 * 179.97438 * 18 17 15
20 20 C 1.46498 * 120.00319 * 269.99920 * 19 18 17
21 21 C 1.36938 * 119.99746 * 90.00234 * 19 18 17
22 22 H 1.08003 * 120.00155 * 22.34662 * 21 19 18
23 23 C 1.38813 * 119.99922 * 202.34399 * 21 19 18
24 24 N 1.31617 * 119.99886 * 11.34911 * 23 21 19
25 25 Si 1.86803 * 120.00009 * 191.34232 * 23 21 19
26 26 H 1.48502 * 109.46969 * 60.00587 * 25 23 21
27 27 H 1.48501 * 109.46824 * 180.02562 * 25 23 21
28 28 H 1.48489 * 109.47287 * 300.00172 * 25 23 21
29 29 H 1.08993 * 109.46962 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.46742 * 300.00337 * 1 2 3
31 31 H 1.09003 * 109.47061 * 59.99894 * 1 2 3
32 32 H 1.09000 * 109.46916 * 299.99558 * 5 4 2
33 33 H 1.09000 * 109.47617 * 59.99799 * 5 4 2
34 34 H 1.08000 * 119.98962 * 359.97438 * 7 6 5
35 35 H 1.07994 * 120.01287 * 180.25325 * 8 7 6
36 36 H 1.08003 * 120.01421 * 179.97438 * 11 9 8
37 37 H 1.07999 * 119.99060 * 179.97438 * 12 11 9
38 38 H 1.09001 * 109.47553 * 90.00074 * 16 15 13
39 39 H 1.09005 * 109.47077 * 209.99891 * 16 15 13
40 40 H 1.08998 * 109.47476 * 329.99250 * 16 15 13
41 41 H 1.09001 * 109.47483 * 210.00282 * 17 15 13
42 42 H 1.08999 * 109.47481 * 330.00056 * 17 15 13
43 43 H 1.08998 * 109.47467 * 300.00151 * 18 17 15
44 44 H 1.08998 * 109.47196 * 60.00072 * 18 17 15
45 45 H 1.09007 * 109.46768 * 94.20883 * 20 19 18
46 46 H 1.08996 * 109.47727 * 214.21052 * 20 19 18
47 47 H 1.09000 * 109.47097 * 334.21633 * 20 19 18
48 48 H 0.97006 * 120.00252 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6737 -1.1667
5 6 2.2001 0.1829 -2.2940
6 6 2.7015 -0.6282 -3.4610
7 6 4.0603 -0.7953 -3.6530
8 6 4.5211 -1.5437 -4.7196
9 6 3.6215 -2.1164 -5.6027
10 9 4.0710 -2.8428 -6.6494
11 6 2.2610 -1.9436 -5.4126
12 6 1.8024 -1.1996 -4.3422
13 6 2.0323 -0.7104 1.2305
14 8 2.6529 -1.7467 1.1215
15 7 1.7920 -0.1942 2.4520
16 6 1.0418 1.0573 2.5836
17 6 2.2807 -0.8845 3.6481
18 6 3.6831 -0.3785 3.9917
19 7 4.1716 -1.0684 5.1882
20 6 3.9102 -0.5067 6.5157
21 6 4.8727 -2.2383 5.0657
22 1 5.3756 -2.4720 4.1389
23 6 4.9371 -3.1238 6.1327
24 7 4.1521 -2.9558 7.1757
25 14 6.1379 -4.5541 6.0884
26 1 7.5237 -4.0335 5.9702
27 1 6.0110 -5.3458 7.3383
28 1 5.8333 -5.4202 4.9213
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.2538 0.6547 -2.5588
33 1 2.9320 0.9513 -2.0450
34 1 4.7619 -0.3442 -2.9670
35 1 5.5825 -1.6775 -4.8671
36 1 1.5584 -2.3896 -6.1010
37 1 0.7412 -1.0643 -4.1939
38 1 -0.0221 0.8361 2.6681
39 1 1.3745 1.5882 3.4756
40 1 1.2151 1.6789 1.7051
41 1 1.6082 -0.6858 4.4826
42 1 2.3177 -1.9573 3.4589
43 1 4.3556 -0.5772 3.1573
44 1 3.6461 0.6942 4.1810
45 1 3.0065 -0.9553 6.9285
46 1 4.7538 -0.7187 7.1726
47 1 3.7756 0.5718 6.4338
48 1 4.1973 -3.5744 7.9215
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001320079284.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:18:18
Heat of formation + Delta-G solvation = -85.294687 kcal
Electronic energy + Delta-G solvation = -28944.797518 eV
Core-core repulsion = 24721.987778 eV
Total energy + Delta-G solvation = -4222.809740 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-49.95816 -41.22661 -40.21097 -38.57439 -37.69613 -36.45926 -33.82420 -33.07327
-32.14167 -31.75231 -29.87499 -27.93077 -27.68851 -26.91103 -25.86137 -24.11457
-24.01232 -22.51360 -22.32071 -20.32067 -18.85976 -18.74921 -18.33856 -17.86960
-17.51761 -17.16707 -16.83132 -16.64274 -16.46788 -16.23349 -15.80566 -15.62914
-15.29748 -15.07695 -14.69033 -14.55931 -14.47472 -14.23840 -14.05786 -13.92017
-13.85100 -13.33601 -13.30854 -13.24542 -13.13091 -12.79039 -12.77017 -12.60926
-12.55995 -12.43678 -12.10013 -12.03412 -12.02182 -11.99147 -11.60978 -10.92370
-10.69631 -10.43272 -10.10109 -9.74477 -9.69501 -8.78359 -7.87546 -5.34842
0.00489 0.24328 1.41947 1.44571 1.51143 1.63709 1.80567 2.43849
2.50428 3.07496 3.23750 3.26720 3.50124 3.70944 3.77405 3.80601
3.91397 3.98130 4.07716 4.15724 4.20283 4.26070 4.38797 4.45798
4.47580 4.59523 4.61174 4.68335 4.80045 4.84037 4.85279 4.93566
4.95559 4.96837 4.99549 5.10796 5.17514 5.20603 5.28547 5.33943
5.49406 5.54053 5.62143 5.72893 5.86443 6.10213 6.30358 6.51140
7.13122 7.25253 7.83765 8.23657 9.15256
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.011770 B = 0.002413 C = 0.002081
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2378.432011 B =11602.537201 C =13452.706513
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.080 3.920
3 H 0.123 0.877
4 O -0.387 6.387
5 C 0.097 3.903
6 C -0.111 4.111
7 C -0.079 4.079
8 C -0.166 4.166
9 C 0.081 3.919
10 F -0.149 7.149
11 C -0.161 4.161
12 C -0.070 4.070
13 C 0.494 3.506
14 O -0.583 6.583
15 N -0.608 5.608
16 C 0.064 3.936
17 C 0.112 3.888
18 C 0.149 3.851
19 N -0.617 5.617
20 C 0.178 3.822
21 C -0.265 4.265
22 H 0.055 0.945
23 C -0.048 4.048
24 N -0.933 5.933
25 Si 0.965 3.035
26 H -0.276 1.276
27 H -0.285 1.285
28 H -0.285 1.285
29 H 0.045 0.955
30 H 0.098 0.902
31 H 0.100 0.900
32 H 0.095 0.905
33 H 0.075 0.925
34 H 0.141 0.859
35 H 0.146 0.854
36 H 0.155 0.845
37 H 0.159 0.841
38 H 0.078 0.922
39 H 0.083 0.917
40 H 0.102 0.898
41 H 0.078 0.922
42 H 0.032 0.968
43 H 0.022 0.978
44 H 0.071 0.929
45 H 0.007 0.993
46 H 0.018 0.982
47 H 0.038 0.962
48 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.874 15.334 -22.794 29.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.020 3.980
3 H 0.140 0.860
4 O -0.306 6.306
5 C 0.021 3.979
6 C -0.111 4.111
7 C -0.097 4.097
8 C -0.185 4.185
9 C 0.062 3.938
10 F -0.128 7.128
11 C -0.179 4.179
12 C -0.087 4.087
13 C 0.283 3.717
14 O -0.462 6.462
15 N -0.342 5.342
16 C -0.077 4.077
17 C -0.013 4.013
18 C 0.022 3.978
19 N -0.341 5.341
20 C 0.033 3.967
21 C -0.396 4.396
22 H 0.073 0.927
23 C -0.243 4.243
24 N -0.580 5.580
25 Si 0.793 3.207
26 H -0.202 1.202
27 H -0.211 1.211
28 H -0.211 1.211
29 H 0.064 0.936
30 H 0.117 0.883
31 H 0.119 0.881
32 H 0.113 0.887
33 H 0.093 0.907
34 H 0.159 0.841
35 H 0.164 0.836
36 H 0.173 0.827
37 H 0.177 0.823
38 H 0.097 0.903
39 H 0.101 0.899
40 H 0.120 0.880
41 H 0.097 0.903
42 H 0.051 0.949
43 H 0.040 0.960
44 H 0.089 0.911
45 H 0.026 0.974
46 H 0.037 0.963
47 H 0.056 0.944
48 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -10.502 14.507 -22.726 28.935
hybrid contribution 0.967 -1.471 0.166 1.768
sum -9.535 13.035 -22.560 27.745
Atomic orbital electron populations
1.22380 0.91238 1.03300 1.05839 1.22004 0.96603 0.96525 0.82902
0.85961 1.88122 1.87025 1.35741 1.19721 1.21628 1.01871 0.91223
0.83131 1.19912 0.93622 1.00943 0.96670 1.21196 0.95877 0.96557
0.96112 1.21350 1.00897 1.00295 0.95930 1.18053 0.93697 0.95330
0.86694 1.91479 1.90079 1.75575 1.55621 1.21410 0.93607 1.02014
1.00883 1.21237 1.01199 0.94037 0.92266 1.21417 0.79323 0.85209
0.85783 1.90739 1.42222 1.26312 1.86909 1.48013 1.55299 1.26050
1.04842 1.22337 0.96477 0.83807 1.05073 1.21985 0.97279 0.96196
0.85873 1.21138 0.92563 0.95719 0.88394 1.44163 1.63057 1.24771
1.02099 1.20608 0.98379 0.92644 0.85050 1.19362 1.24041 0.96713
0.99435 0.92738 1.25709 1.00690 1.00237 0.97681 1.70187 1.40007
1.39087 1.08705 0.85385 0.79324 0.79371 0.76643 1.20178 1.21100
1.21130 0.93570 0.88329 0.88142 0.88737 0.90674 0.84098 0.83624
0.82719 0.82330 0.90326 0.89856 0.87961 0.90326 0.94930 0.95953
0.91062 0.97430 0.96313 0.94363 0.94047
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.31 9.25 71.98 0.67 -1.65 16
2 C 0.08 1.63 2.32 29.85 0.07 1.70 16
3 H 0.12 1.50 6.78 -2.39 -0.02 1.48 16
4 O -0.39 -9.59 9.51 -129.99 -1.24 -10.83 16
5 C 0.10 1.46 5.87 71.24 0.42 1.88 16
6 C -0.11 -2.00 5.51 -19.86 -0.11 -2.11 16
7 C -0.08 -1.53 9.70 22.26 0.22 -1.31 16
8 C -0.17 -3.25 10.03 22.31 0.22 -3.02 16
9 C 0.08 1.65 7.30 22.37 0.16 1.81 16
10 F -0.15 -3.26 17.27 44.97 0.78 -2.48 16
11 C -0.16 -2.69 10.03 22.31 0.22 -2.46 16
12 C -0.07 -1.08 9.70 22.26 0.22 -0.86 16
13 C 0.49 16.20 7.10 87.66 0.62 16.82 16
14 O -0.58 -27.26 16.09 15.94 0.26 -27.00 16
15 N -0.61 -17.57 2.87 -846.78 -2.43 -20.01 16
16 C 0.06 0.96 8.92 127.77 1.14 2.10 16
17 C 0.11 4.42 5.73 86.38 0.49 4.91 16
18 C 0.15 6.37 6.03 86.38 0.52 6.89 16
19 N -0.62 -32.38 2.93 -726.95 -2.13 -34.50 16
20 C 0.18 8.73 9.01 127.77 1.15 9.88 16
21 C -0.27 -15.72 9.67 84.03 0.81 -14.91 16
22 H 0.05 3.32 7.84 -2.91 -0.02 3.30 16
23 C -0.05 -2.82 5.13 84.86 0.44 -2.39 16
24 N -0.93 -56.43 10.58 21.65 0.23 -56.20 16
25 Si 0.96 47.97 29.57 68.60 2.03 49.99 16
26 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16
27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16
28 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16
29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
30 H 0.10 0.94 5.12 -2.39 -0.01 0.93 16
31 H 0.10 0.73 7.87 -2.39 -0.02 0.71 16
32 H 0.09 0.77 7.81 -2.39 -0.02 0.75 16
33 H 0.08 0.90 8.03 -2.39 -0.02 0.88 16
34 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16
35 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16
36 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16
37 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16
38 H 0.08 0.90 7.02 -2.39 -0.02 0.88 16
39 H 0.08 1.18 8.07 -2.38 -0.02 1.16 16
40 H 0.10 0.83 6.07 -2.39 -0.01 0.81 16
41 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16
42 H 0.03 1.62 7.42 -2.39 -0.02 1.60 16
43 H 0.02 1.04 8.03 -2.39 -0.02 1.03 16
44 H 0.07 2.51 7.86 -2.39 -0.02 2.49 16
45 H 0.01 0.39 7.42 -2.38 -0.02 0.37 16
46 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16
47 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16
48 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16
Total: -1.00 -83.94 398.57 5.71 -78.24
By element:
Atomic # 1 Polarization: 4.56 SS G_CDS: 0.95 Total: 5.51 kcal
Atomic # 6 Polarization: 10.02 SS G_CDS: 7.26 Total: 17.29 kcal
Atomic # 7 Polarization: -106.38 SS G_CDS: -4.33 Total: -110.71 kcal
Atomic # 8 Polarization: -36.85 SS G_CDS: -0.98 Total: -37.83 kcal
Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal
Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 49.99 kcal
Total: -83.94 5.71 -78.24 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001320079284.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.060 kcal
(2) G-P(sol) polarization free energy of solvation -83.944 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.004 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds