Wall clock time and date at job start Tue Mar 31 2020 20:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47218 * 2 1 4 4 C 1.53000 * 109.46868 * 120.00210 * 2 1 3 5 5 N 1.46503 * 109.47199 * 174.99871 * 4 2 1 6 6 C 1.46497 * 119.99742 * 269.99935 * 5 4 2 7 7 C 1.36936 * 119.99869 * 89.99723 * 5 4 2 8 8 H 1.08001 * 120.00120 * 20.38398 * 7 5 4 9 9 C 1.38807 * 119.99999 * 200.38031 * 7 5 4 10 10 N 1.31623 * 120.00082 * 15.00532 * 9 7 5 11 11 Si 1.86797 * 120.00278 * 195.00352 * 9 7 5 12 12 H 1.48508 * 109.47040 * 85.00455 * 11 9 7 13 13 H 1.48503 * 109.47610 * 205.00254 * 11 9 7 14 14 H 1.48503 * 109.47158 * 325.00880 * 11 9 7 15 15 N 1.46498 * 109.47126 * 240.00094 * 2 1 3 16 16 C 1.34771 * 120.00664 * 85.00335 * 15 2 1 17 17 O 1.21284 * 119.99669 * 359.97438 * 16 15 2 18 18 C 1.50698 * 120.00696 * 180.02562 * 16 15 2 19 19 O 1.42898 * 109.47321 * 180.02562 * 18 16 15 20 20 C 1.42902 * 113.99817 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.46885 * 179.97438 * 20 19 18 22 22 C 1.50696 * 109.47022 * 180.02562 * 21 20 19 23 23 C 1.38272 * 119.98821 * 269.72514 * 22 21 20 24 24 C 1.38223 * 120.05288 * 179.72670 * 23 22 21 25 25 C 1.38227 * 120.02467 * 0.54897 * 24 23 22 26 26 C 1.38434 * 119.97090 * 359.72673 * 25 24 23 27 27 F 1.35103 * 120.02289 * 180.02562 * 26 25 24 28 28 C 1.38185 * 119.99026 * 90.00210 * 22 21 20 29 29 H 1.09002 * 109.46485 * 59.99686 * 1 2 3 30 30 H 1.08992 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47243 * 300.00244 * 1 2 3 32 32 H 1.09001 * 109.47005 * 294.99812 * 4 2 1 33 33 H 1.08998 * 109.47272 * 54.99538 * 4 2 1 34 34 H 1.09003 * 109.47243 * 95.12914 * 6 5 4 35 35 H 1.09004 * 109.46817 * 215.12497 * 6 5 4 36 36 H 1.08990 * 109.47151 * 335.12522 * 6 5 4 37 37 H 0.96996 * 120.00167 * 179.97438 * 10 9 7 38 38 H 0.97011 * 119.99957 * 265.00288 * 15 2 1 39 39 H 1.08999 * 109.46991 * 59.99749 * 18 16 15 40 40 H 1.09005 * 109.46830 * 299.99645 * 18 16 15 41 41 H 1.08990 * 109.47107 * 299.99591 * 20 19 18 42 42 H 1.08999 * 109.47171 * 60.00204 * 20 19 18 43 43 H 1.09007 * 109.47125 * 299.99874 * 21 20 19 44 44 H 1.09003 * 109.47226 * 59.99677 * 21 20 19 45 45 H 1.07998 * 119.97114 * 359.97438 * 23 22 21 46 46 H 1.07993 * 119.98824 * 180.27457 * 24 23 22 47 47 H 1.07999 * 120.00955 * 179.74771 * 25 24 23 48 48 H 1.07998 * 120.00570 * 359.97438 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5613 7 6 4.2798 0.1647 1.7241 8 1 3.8671 0.8400 2.4589 9 6 5.6009 0.3014 1.3205 10 7 6.0234 -0.3086 0.2334 11 14 6.7791 1.3512 2.3200 12 1 7.3498 0.5394 3.4249 13 1 7.8760 1.8353 1.4439 14 1 6.0481 2.5133 2.8862 15 7 2.0184 -0.6906 -1.1962 16 6 2.1472 -0.0183 -2.3571 17 8 1.8584 1.1583 -2.4117 18 6 2.6490 -0.7289 -3.5877 19 8 2.6978 0.1895 -4.6814 20 6 3.1635 -0.3863 -5.9035 21 6 3.1738 0.6816 -6.9991 22 6 3.6643 0.0742 -8.2881 23 6 5.0136 0.0895 -8.5898 24 6 5.4656 -0.4723 -9.7691 25 6 4.5677 -1.0400 -10.6535 26 6 3.2159 -1.0508 -10.3551 27 9 2.3375 -1.6058 -11.2185 28 6 2.7648 -0.4927 -9.1707 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.7516 -0.1584 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 4.3628 -1.7608 -0.4772 35 1 5.0416 -2.2454 1.0953 36 1 3.4384 -2.8372 0.5975 37 1 6.9464 -0.2128 -0.0489 38 1 2.2490 -1.6319 -1.1526 39 1 1.9760 -1.5506 -3.8326 40 1 3.6481 -1.1214 -3.3986 41 1 4.1731 -0.7718 -5.7620 42 1 2.5013 -1.2009 -6.1969 43 1 2.1639 1.0668 -7.1406 44 1 3.8356 1.4965 -6.7060 45 1 5.7153 0.5372 -7.9016 46 1 6.5201 -0.4637 -10.0016 47 1 4.9207 -1.4752 -11.5767 48 1 1.7105 -0.5009 -8.9367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322170175.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:58 Heat of formation + Delta-G solvation = -84.954077 kcal Electronic energy + Delta-G solvation = -28653.032174 eV Core-core repulsion = 24430.237203 eV Total energy + Delta-G solvation = -4222.794970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.18784 -39.63992 -39.27531 -37.59041 -36.19806 -34.00112 -33.65159 -31.41778 -30.90911 -30.40077 -29.20729 -26.98957 -26.20081 -25.58998 -23.82045 -23.03829 -21.92433 -21.43129 -20.43003 -19.82477 -17.64229 -16.93333 -16.82522 -16.80355 -16.51392 -16.29954 -16.10231 -15.88715 -15.25919 -14.87407 -14.59094 -14.31270 -14.09926 -13.79156 -13.57714 -13.38616 -13.27537 -13.12071 -12.88576 -12.63167 -12.32396 -12.14411 -12.09860 -11.88325 -11.46377 -11.41191 -11.34047 -11.26520 -11.08739 -10.84853 -10.78273 -10.55018 -10.22051 -9.97667 -9.84281 -9.64201 -9.32509 -9.18752 -8.99577 -8.60326 -8.34738 -6.79669 -5.74358 -3.16774 0.79659 0.85243 3.06445 3.21312 3.33775 3.39416 3.45920 3.46815 3.88886 4.17726 4.40630 4.50378 4.52618 4.73699 4.86048 4.92540 5.00459 5.05633 5.22237 5.26905 5.28236 5.35494 5.46049 5.49293 5.51255 5.59199 5.69755 5.72415 5.78420 5.85664 5.87197 5.97579 5.99963 6.09776 6.21124 6.24303 6.47332 6.53140 6.55492 6.61158 6.88098 7.06361 7.22655 7.29478 7.61054 7.80063 8.13091 8.36482 8.85141 9.21553 9.84727 10.31471 11.31423 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.002185 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.948516 B =12811.592131 C =14174.995383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.161 3.839 7 C -0.254 4.254 8 H 0.069 0.931 9 C 0.003 3.997 10 N -0.905 5.905 11 Si 0.904 3.096 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.698 5.698 16 C 0.519 3.481 17 O -0.533 6.533 18 C 0.046 3.954 19 O -0.361 6.361 20 C 0.067 3.933 21 C -0.081 4.081 22 C -0.049 4.049 23 C -0.123 4.123 24 C -0.088 4.088 25 C -0.159 4.159 26 C 0.098 3.902 27 F -0.141 7.141 28 C -0.150 4.150 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.030 0.970 35 H 0.043 0.957 36 H -0.004 1.004 37 H 0.251 0.749 38 H 0.394 0.606 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.700 -5.366 -17.861 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.104 0.896 4 C 0.015 3.985 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.384 4.384 8 H 0.087 0.913 9 C -0.195 4.195 10 N -0.551 5.551 11 Si 0.734 3.266 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.349 5.349 16 C 0.303 3.697 17 O -0.409 6.409 18 C -0.034 4.034 19 O -0.280 6.280 20 C -0.010 4.010 21 C -0.119 4.119 22 C -0.049 4.049 23 C -0.141 4.141 24 C -0.106 4.106 25 C -0.178 4.178 26 C 0.078 3.922 27 F -0.120 7.120 28 C -0.168 4.168 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.061 0.939 38 H 0.228 0.772 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.807 -4.344 -17.970 19.378 hybrid contribution 0.882 -0.307 0.148 0.946 sum -4.925 -4.651 -17.822 19.066 Atomic orbital electron populations 1.22155 0.96879 1.01062 1.01736 1.21868 0.91650 0.99186 0.86145 0.89647 1.21195 0.85703 0.97269 0.94369 1.43927 0.99107 1.20875 1.68074 1.20843 0.94589 0.85104 0.97797 1.19185 0.92892 1.09650 1.16651 0.91291 1.24933 0.98623 0.99460 0.96531 1.70054 1.15904 1.46914 1.22180 0.86276 0.80900 0.80017 0.79361 1.21571 1.21832 1.20585 1.45660 1.66600 1.13646 1.09033 1.19949 0.78096 0.87398 0.84209 1.90670 1.49607 1.15662 1.84980 1.22228 1.01964 0.92214 0.86950 1.87978 1.87063 1.35541 1.17371 1.22440 0.98842 0.95372 0.84383 1.20492 1.03533 0.98129 0.89718 1.19618 0.93136 0.96776 0.95378 1.21254 0.95208 1.00188 0.97497 1.21043 0.99801 0.96383 0.93417 1.21170 0.91527 1.03329 1.01748 1.17698 0.87272 0.98114 0.89067 1.91504 1.68574 1.83160 1.68742 1.21095 1.01198 1.00999 0.93536 0.92949 0.93204 0.92071 0.92228 0.93965 0.95190 0.93795 0.98596 0.93898 0.77169 0.91020 0.89897 0.92757 0.93195 0.89598 0.89215 0.84880 0.84823 0.84829 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.48 37.16 0.35 -2.04 16 2 C 0.12 2.21 2.88 -67.93 -0.20 2.02 16 3 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 4 C 0.14 2.71 5.33 -4.04 -0.02 2.69 16 5 N -0.60 -14.10 2.78 -181.12 -0.50 -14.61 16 6 C 0.16 3.63 7.60 59.85 0.45 4.09 16 7 C -0.25 -6.83 9.68 -15.06 -0.15 -6.97 16 8 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 9 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 10 N -0.91 -25.69 10.67 55.49 0.59 -25.10 16 11 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 N -0.70 -12.48 4.42 -53.81 -0.24 -12.72 16 16 C 0.52 10.01 7.87 -10.99 -0.09 9.92 16 17 O -0.53 -12.52 16.16 -14.36 -0.23 -12.75 16 18 C 0.05 0.70 6.42 36.00 0.23 0.93 16 19 O -0.36 -5.79 9.88 -55.14 -0.54 -6.33 16 20 C 0.07 0.77 5.92 37.16 0.22 0.99 16 21 C -0.08 -0.82 5.71 -27.89 -0.16 -0.98 16 22 C -0.05 -0.45 5.13 -104.63 -0.54 -0.99 16 23 C -0.12 -1.03 9.70 -39.57 -0.38 -1.42 16 24 C -0.09 -0.66 10.04 -39.59 -0.40 -1.05 16 25 C -0.16 -1.28 10.03 -39.51 -0.40 -1.67 16 26 C 0.10 0.92 7.30 -39.42 -0.29 0.64 16 27 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 28 C -0.15 -1.37 9.68 -39.51 -0.38 -1.76 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 34 H 0.03 0.71 6.97 -51.93 -0.36 0.35 16 35 H 0.04 1.10 7.22 -51.93 -0.37 0.72 16 36 H 0.00 -0.08 7.83 -51.93 -0.41 -0.49 16 37 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.39 6.28 7.18 -40.81 -0.29 5.99 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 44 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 45 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 48 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 404.15 15.07 6.09 6.09 Total: -1.00 -33.32 404.15 -9.34 -42.67 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.69 Total: 2.85 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: -1.82 Total: 4.38 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.15 Total: -52.43 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.78 Total: -19.08 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.32 -9.34 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322170175.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.287 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds